Guide to the Human Genome
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Name: LOC100128473 Sequence: fasta or formatted (116aa) NCBI GI: 239743011
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.9          1           1
 C cysteine            2.6          3           1
 D aspartate           1.7          2           1
 E glutamate           0.9          1           1
 F phenylalanine       2.6          3           1
 G glycine             1.7          2           1
 H histidine           5.2          6           1
 I isoleucine         16.4         19           1
 K lysine              3.4          4           2
 L leucine             6.0          7           1
 M methionine          4.3          5           1
 N asparagine          0.9          1           1
 P proline             1.7          2           2
 Q glutamine           0.9          1           1
 R arginine            1.7          2           1
 S serine              6.9          8           2
 T threonine           6.9          8           1
 V valine              7.8          9           1
 W tryptophan          0.0          0           0
 Y tyrosine           27.6         32           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132782          0.429   PREDICTED: hypothetical protein 
LOC100134279          0.420   PREDICTED: hypothetical protein, partial 
LOC100132983          0.398   PREDICTED: hypothetical protein 
LOC100134060          0.394   PREDICTED: hypothetical protein 
LOC100288317          0.394   PREDICTED: hypothetical protein XP_002342505 
LOC100129642          0.385   PREDICTED: hypothetical protein 
LOC100134411          0.385   PREDICTED: hypothetical protein 
LOC100133741          0.381   PREDICTED: hypothetical protein 
LOC100134576          0.381   PREDICTED: hypothetical protein 
LOC100133515          0.372   PREDICTED: hypothetical protein 
LOC100131203          0.367   PREDICTED: hypothetical protein 
LOC100132679          0.367   PREDICTED: hypothetical protein 
LOC100133807          0.367   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.367   PREDICTED: similar to serine/threonine-protein kina...
LOC100129825          0.367   PREDICTED: hypothetical protein 
LOC100131203          0.367   PREDICTED: similar to serine/threonine-protein kina...
LOC100134139          0.363   PREDICTED: hypothetical protein 
LOC100291751          0.363   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100132107          0.363   PREDICTED: hypothetical protein 
LOC100293574          0.354   PREDICTED: hypothetical protein, partial 
LOC100294441          0.354   PREDICTED: hypothetical protein 
LOC100128267          0.354   PREDICTED: hypothetical protein, partial 
LOC100291872          0.354   PREDICTED: hypothetical protein XP_002345798 
LOC100132016          0.350   PREDICTED: hypothetical protein 
LOC100288070          0.341   PREDICTED: hypothetical protein XP_002342194 
LOC100134332          0.341   PREDICTED: hypothetical protein, partial 
LOC100129802          0.341   PREDICTED: hypothetical protein, partial 
LOC100293155          0.336   PREDICTED: hypothetical protein 
LOC100133450          0.336   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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