Guide to the Human Genome
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Name: LOC100132983 Sequence: fasta or formatted (358aa) NCBI GI: 239742345
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         26           4
 C cysteine            6.4         23           1
 D aspartate           1.7          6           1
 E glutamate           2.5          9           1
 F phenylalanine       1.1          4           1
 G glycine             5.0         18           2
 H histidine           6.7         24           1
 I isoleucine         15.4         55           1
 K lysine              1.7          6           1
 L leucine             4.2         15           2
 M methionine          2.5          9           1
 N asparagine          0.3          1           1
 P proline             5.0         18           2
 Q glutamine           1.4          5           1
 R arginine            6.1         22           2
 S serine              4.2         15           2
 T threonine           5.0         18           1
 V valine              7.3         26           2
 W tryptophan          1.7          6           1
 Y tyrosine           14.5         52           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100134411          0.282   PREDICTED: hypothetical protein 
LOC100133226          0.277   PREDICTED: hypothetical protein 
LOC100134060          0.264   PREDICTED: hypothetical protein 
LOC100132016          0.264   PREDICTED: hypothetical protein 
LOC100134279          0.263   PREDICTED: hypothetical protein, partial 
LOC100129642          0.263   PREDICTED: hypothetical protein 
LOC100131203          0.263   PREDICTED: hypothetical protein 
LOC100131203          0.260   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.260   PREDICTED: similar to serine/threonine-protein kina...
LOC100129825          0.255   PREDICTED: hypothetical protein 
LOC100133807          0.252   PREDICTED: similar to serine/threonine-protein kina...
LOC100133515          0.249   PREDICTED: hypothetical protein 
LOC100288317          0.247   PREDICTED: hypothetical protein XP_002342505 
LOC100293155          0.243   PREDICTED: hypothetical protein 
LOC100134730          0.243   PREDICTED: hypothetical protein 
LOC100132016          0.243   PREDICTED: hypothetical protein 
LOC100132679          0.243   PREDICTED: hypothetical protein 
LOC100132782          0.240   PREDICTED: hypothetical protein 
LOC100133173          0.240   PREDICTED: hypothetical protein 
LOC100134139          0.236   PREDICTED: hypothetical protein 
LOC100133844          0.234   PREDICTED: hypothetical protein 
LOC100133450          0.234   PREDICTED: hypothetical protein, partial 
LOC100287975          0.234   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100133741          0.231   PREDICTED: hypothetical protein 
LOC100134325          0.230   PREDICTED: hypothetical protein 
LOC100291751          0.230   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100293574          0.230   PREDICTED: hypothetical protein, partial 
LOC100132107          0.230   PREDICTED: hypothetical protein 
LOC100289649          0.230   PREDICTED: hypothetical protein XP_002342367 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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