Guide to the Human Genome
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Name: LOC100287975 Sequence: fasta or formatted (333aa) NCBI GI: 239742359
Description:

PREDICTED: hypothetical protein XP_002342501, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         17           1
 C cysteine           10.5         35           1
 D aspartate           1.5          5           1
 E glutamate           2.1          7           1
 F phenylalanine       1.8          6           1
 G glycine             0.9          3           1
 H histidine           8.1         27           1
 I isoleucine         12.9         43           2
 K lysine              2.1          7           1
 L leucine             4.5         15           1
 M methionine          6.0         20           1
 N asparagine          2.7          9           1
 P proline             2.7          9           2
 Q glutamine           1.8          6           1
 R arginine            2.1          7           1
 S serine              4.2         14           2
 T threonine           6.3         21           1
 V valine              9.3         31           1
 W tryptophan          0.3          1           1
 Y tyrosine           15.0         50           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342501, parti... 
LOC100133450          1.000   PREDICTED: hypothetical protein, partial 
LOC100134411          0.330   PREDICTED: hypothetical protein 
LOC100133226          0.313   PREDICTED: hypothetical protein 
LOC100132423          0.288   PREDICTED: hypothetical protein, partial 
LOC100134279          0.278   PREDICTED: hypothetical protein, partial 
LOC100134332          0.271   PREDICTED: hypothetical protein, partial 
LOC100134730          0.271   PREDICTED: hypothetical protein 
LOC100129825          0.270   PREDICTED: hypothetical protein 
LOC100293574          0.268   PREDICTED: hypothetical protein, partial 
LOC100291751          0.265   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100132016          0.265   PREDICTED: hypothetical protein 
LOC100288317          0.265   PREDICTED: hypothetical protein XP_002342505 
LOC100132679          0.264   PREDICTED: hypothetical protein 
LOC100132016          0.263   PREDICTED: hypothetical protein 
LOC100134353          0.263   PREDICTED: hypothetical protein 
LOC100131203          0.261   PREDICTED: hypothetical protein 
LOC100134060          0.260   PREDICTED: hypothetical protein 
LOC100131203          0.258   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.258   PREDICTED: similar to serine/threonine-protein kina...
LOC100133975          0.257   PREDICTED: hypothetical protein, partial 
LOC100134576          0.256   PREDICTED: hypothetical protein 
LOC100133173          0.254   PREDICTED: hypothetical protein 
LOC100134139          0.254   PREDICTED: hypothetical protein 
LOC100133741          0.253   PREDICTED: hypothetical protein 
LOC100289649          0.251   PREDICTED: hypothetical protein XP_002342367 
LOC100132983          0.246   PREDICTED: hypothetical protein 
LOC100293155          0.243   PREDICTED: hypothetical protein 
LOC100129642          0.240   PREDICTED: hypothetical protein 
LOC100134395          0.239   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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