Guide to the Human Genome
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Name: LOC100293574 Sequence: fasta or formatted (217aa) NCBI GI: 239755524
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.9          2           1
 C cysteine           12.4         27           1
 D aspartate           0.0          0           0
 E glutamate           3.2          7           3
 F phenylalanine       0.5          1           1
 G glycine             0.9          2           1
 H histidine           2.8          6           1
 I isoleucine         20.7         45           1
 K lysine              1.4          3           1
 L leucine             1.4          3           1
 M methionine          6.5         14           1
 N asparagine          1.8          4           1
 P proline             1.4          3           1
 Q glutamine           1.4          3           1
 R arginine            0.5          1           1
 S serine              2.3          5           1
 T threonine           4.6         10           1
 V valine             11.1         24           1
 W tryptophan          0.9          2           1
 Y tyrosine           25.3         55           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC100133226          0.522   PREDICTED: hypothetical protein 
LOC100134411          0.503   PREDICTED: hypothetical protein 
LOC100129825          0.467   PREDICTED: hypothetical protein 
LOC100134279          0.437   PREDICTED: hypothetical protein, partial 
LOC100291751          0.435   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100133450          0.428   PREDICTED: hypothetical protein, partial 
LOC100287975          0.428   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100133975          0.411   PREDICTED: hypothetical protein, partial 
LOC100133807          0.405   PREDICTED: similar to serine/threonine-protein kina...
LOC100134060          0.398   PREDICTED: hypothetical protein 
LOC100132016          0.398   PREDICTED: hypothetical protein 
LOC100132679          0.398   PREDICTED: hypothetical protein 
LOC100134730          0.398   PREDICTED: hypothetical protein 
LOC100129642          0.394   PREDICTED: hypothetical protein 
LOC100134139          0.390   PREDICTED: hypothetical protein 
LOC100133741          0.388   PREDICTED: hypothetical protein 
LOC100134353          0.385   PREDICTED: hypothetical protein 
LOC100131203          0.385   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.385   PREDICTED: similar to serine/threonine-protein kina...
LOC100288317          0.383   PREDICTED: hypothetical protein XP_002342505 
LOC100134576          0.381   PREDICTED: hypothetical protein 
LOC100132983          0.379   PREDICTED: hypothetical protein 
LOC100131203          0.377   PREDICTED: hypothetical protein 
LOC100132016          0.377   PREDICTED: hypothetical protein 
LOC100134395          0.364   PREDICTED: hypothetical protein, partial 
LOC100128267          0.362   PREDICTED: hypothetical protein, partial 
LOC100133515          0.358   PREDICTED: hypothetical protein 
LOC100293155          0.355   PREDICTED: hypothetical protein 
LOC100294466          0.355   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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