Guide to the Human Genome
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Name: LOC100134353 Sequence: fasta or formatted (603aa) NCBI GI: 239757058
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         36           3
 C cysteine            9.3         56           1
 D aspartate           2.7         16           1
 E glutamate           2.5         15           2
 F phenylalanine       4.1         25           1
 G glycine             3.6         22           2
 H histidine           5.3         32           2
 I isoleucine          7.8         47           2
 K lysine              3.2         19           2
 L leucine             8.1         49           3
 M methionine          5.1         31           1
 N asparagine          1.8         11           1
 P proline             4.1         25           1
 Q glutamine           4.5         27           3
 R arginine            2.7         16           1
 S serine              7.3         44           2
 T threonine           4.6         28           2
 V valine              7.8         47           2
 W tryptophan          1.3          8           1
 Y tyrosine            8.1         49           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133226          0.170   PREDICTED: hypothetical protein 
LOC100132016          0.164   PREDICTED: hypothetical protein 
LOC100134411          0.161   PREDICTED: hypothetical protein 
LOC100129825          0.154   PREDICTED: hypothetical protein 
LOC100133450          0.147   PREDICTED: hypothetical protein, partial 
LOC100287975          0.147   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100131203          0.141   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.141   PREDICTED: similar to serine/threonine-protein kina...
LOC100134279          0.140   PREDICTED: hypothetical protein, partial 
LOC100134730          0.140   PREDICTED: hypothetical protein 
LOC100132016          0.140   PREDICTED: hypothetical protein 
LOC100291751          0.140   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100293574          0.137   PREDICTED: hypothetical protein, partial 
LOC100132423          0.136   PREDICTED: hypothetical protein, partial 
LOC100134395          0.136   PREDICTED: hypothetical protein, partial 
LOC100129642          0.135   PREDICTED: hypothetical protein 
LOC100134060          0.134   PREDICTED: hypothetical protein 
LOC100133844          0.133   PREDICTED: hypothetical protein 
LOC100132679          0.133   PREDICTED: hypothetical protein 
LOC100133975          0.133   PREDICTED: hypothetical protein, partial 
LOC100133741          0.133   PREDICTED: hypothetical protein 
LOC100134139          0.133   PREDICTED: hypothetical protein 
LOC100293155          0.133   PREDICTED: hypothetical protein 
LOC100134332          0.130   PREDICTED: hypothetical protein, partial 
LOC100131203          0.128   PREDICTED: hypothetical protein 
LOC100294466          0.128   PREDICTED: hypothetical protein, partial 
LOC100133515          0.126   PREDICTED: hypothetical protein 
LOC100129802          0.126   PREDICTED: hypothetical protein, partial 
LOC100288317          0.123   PREDICTED: hypothetical protein XP_002342505 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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