Guide to the Human Genome
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Name: LOC100134279 Sequence: fasta or formatted (235aa) NCBI GI: 169171646
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.6          6           2
 C cysteine           13.2         31           1
 D aspartate           0.9          2           1
 E glutamate           1.7          4           2
 F phenylalanine       1.7          4           1
 G glycine             0.9          2           2
 H histidine           6.0         14           1
 I isoleucine         16.2         38           1
 K lysine              0.4          1           1
 L leucine             1.3          3           1
 M methionine          4.7         11           1
 N asparagine          0.0          0           0
 P proline             0.0          0           0
 Q glutamine           0.9          2           1
 R arginine            1.3          3           2
 S serine              3.8          9           2
 T threonine           8.1         19           2
 V valine             15.3         36           1
 W tryptophan          0.0          0           0
 Y tyrosine           21.3         50           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC100134576          0.488   PREDICTED: hypothetical protein 
LOC100132016          0.446   PREDICTED: hypothetical protein 
LOC100134139          0.426   PREDICTED: hypothetical protein 
LOC100133226          0.426   PREDICTED: hypothetical protein 
LOC100134411          0.416   PREDICTED: hypothetical protein 
LOC100288317          0.404   PREDICTED: hypothetical protein XP_002342505 
LOC100132983          0.396   PREDICTED: hypothetical protein 
LOC100293155          0.396   PREDICTED: hypothetical protein 
LOC100133450          0.396   PREDICTED: hypothetical protein, partial 
LOC100287975          0.396   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100134060          0.394   PREDICTED: hypothetical protein 
LOC100293574          0.394   PREDICTED: hypothetical protein, partial 
LOC100132016          0.392   PREDICTED: hypothetical protein 
LOC100291751          0.390   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100129825          0.388   PREDICTED: hypothetical protein 
LOC100131203          0.384   PREDICTED: hypothetical protein 
LOC100133741          0.376   PREDICTED: hypothetical protein 
LOC100132679          0.376   PREDICTED: hypothetical protein 
LOC100129642          0.367   PREDICTED: hypothetical protein 
LOC100131203          0.367   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.367   PREDICTED: similar to serine/threonine-protein kina...
LOC100134353          0.359   PREDICTED: hypothetical protein 
LOC100133173          0.359   PREDICTED: hypothetical protein 
LOC100134332          0.357   PREDICTED: hypothetical protein, partial 
LOC100134730          0.355   PREDICTED: hypothetical protein 
LOC100133807          0.353   PREDICTED: similar to serine/threonine-protein kina...
LOC100134395          0.353   PREDICTED: hypothetical protein, partial 
LOC100133515          0.345   PREDICTED: hypothetical protein 
LOC100133975          0.343   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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