Guide to the Human Genome
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Name: LOC100133553 Sequence: fasta or formatted (202aa) NCBI GI: 169166886
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.5          3           1
 C cysteine            6.4         13           1
 D aspartate           1.0          2           2
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine             1.0          2           1
 H histidine          17.3         35           1
 I isoleucine         17.8         36           1
 K lysine              0.0          0           0
 L leucine             2.0          4           1
 M methionine          2.0          4           1
 N asparagine          0.0          0           0
 P proline             1.5          3           1
 Q glutamine           1.0          2           1
 R arginine            1.0          2           1
 S serine              3.0          6           2
 T threonine          15.3         31           1
 V valine             10.4         21           1
 W tryptophan          0.0          0           0
 Y tyrosine           18.8         38           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC100288317          0.437   PREDICTED: hypothetical protein XP_002342505 
LOC100134325          0.428   PREDICTED: hypothetical protein 
LOC100129642          0.416   PREDICTED: hypothetical protein 
LOC100134332          0.416   PREDICTED: hypothetical protein, partial 
LOC100132107          0.409   PREDICTED: hypothetical protein 
LOC100134139          0.400   PREDICTED: hypothetical protein 
LOC100133173          0.400   PREDICTED: hypothetical protein 
LOC100129802          0.395   PREDICTED: hypothetical protein, partial 
LOC100134395          0.393   PREDICTED: hypothetical protein, partial 
LOC100133515          0.391   PREDICTED: hypothetical protein 
LOC100131203          0.386   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.386   PREDICTED: similar to serine/threonine-protein kina...
LOC100132423          0.384   PREDICTED: hypothetical protein, partial 
LOC100134060          0.382   PREDICTED: hypothetical protein 
LOC100131203          0.382   PREDICTED: hypothetical protein 
LOC100132983          0.382   PREDICTED: hypothetical protein 
LOC100132016          0.375   PREDICTED: hypothetical protein 
LOC100132782          0.375   PREDICTED: hypothetical protein 
LOC100134279          0.372   PREDICTED: hypothetical protein, partial 
LOC100134730          0.372   PREDICTED: hypothetical protein 
LOC100134411          0.370   PREDICTED: hypothetical protein 
LOC100129802          0.370   PREDICTED: hypothetical protein 
LOC100128267          0.368   PREDICTED: hypothetical protein, partial 
LOC100294466          0.366   PREDICTED: hypothetical protein, partial 
LOC100133450          0.361   PREDICTED: hypothetical protein, partial 
LOC100287975          0.361   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100289649          0.361   PREDICTED: hypothetical protein XP_002342367 
LOC100133975          0.361   PREDICTED: hypothetical protein, partial 
LOC100132679          0.359   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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