Guide to the Human Genome
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Name: LOC100294466 Sequence: fasta or formatted (238aa) NCBI GI: 239750545
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8          9           2
 C cysteine           10.1         24           2
 D aspartate           1.3          3           2
 E glutamate           0.0          0           0
 F phenylalanine       0.8          2           1
 G glycine             1.3          3           1
 H histidine           9.2         22           1
 I isoleucine         15.5         37           2
 K lysine              0.4          1           1
 L leucine             5.5         13           2
 M methionine          6.7         16           1
 N asparagine          0.4          1           1
 P proline             2.1          5           1
 Q glutamine           0.8          2           1
 R arginine            0.8          2           1
 S serine              2.5          6           1
 T threonine           7.1         17           2
 V valine             13.0         31           2
 W tryptophan          0.0          0           0
 Y tyrosine           18.5         44           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC100134395          0.748   PREDICTED: hypothetical protein, partial 
LOC100132016          0.379   PREDICTED: hypothetical protein 
LOC100128267          0.367   PREDICTED: hypothetical protein, partial 
LOC100129642          0.365   PREDICTED: hypothetical protein 
LOC100134279          0.361   PREDICTED: hypothetical protein, partial 
LOC100133226          0.353   PREDICTED: hypothetical protein 
LOC100134411          0.345   PREDICTED: hypothetical protein 
LOC100291751          0.337   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100132423          0.333   PREDICTED: hypothetical protein, partial 
LOC100288317          0.333   PREDICTED: hypothetical protein XP_002342505 
LOC100133975          0.331   PREDICTED: hypothetical protein, partial 
LOC100134730          0.331   PREDICTED: hypothetical protein 
LOC100133450          0.329   PREDICTED: hypothetical protein, partial 
LOC100129825          0.329   PREDICTED: hypothetical protein 
LOC100287975          0.329   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100289649          0.329   PREDICTED: hypothetical protein XP_002342367 
LOC100293574          0.327   PREDICTED: hypothetical protein, partial 
LOC100133741          0.327   PREDICTED: hypothetical protein 
LOC100132983          0.327   PREDICTED: hypothetical protein 
LOC100132782          0.325   PREDICTED: hypothetical protein 
LOC100134353          0.325   PREDICTED: hypothetical protein 
LOC100134332          0.323   PREDICTED: hypothetical protein, partial 
LOC100134060          0.321   PREDICTED: hypothetical protein 
LOC100134139          0.315   PREDICTED: hypothetical protein 
LOC100133807          0.315   PREDICTED: similar to serine/threonine-protein kina...
LOC100133553          0.315   PREDICTED: hypothetical protein, partial 
LOC100132016          0.312   PREDICTED: hypothetical protein 
LOC100132679          0.308   PREDICTED: hypothetical protein 
LOC100131203          0.306   PREDICTED: similar to serine/threonine-protein kina...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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