Guide to the Human Genome
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Name: LOC100134411 Sequence: fasta or formatted (228aa) NCBI GI: 239754944
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.8          4           1
 C cysteine           14.0         32           1
 D aspartate           0.0          0           0
 E glutamate           0.9          2           2
 F phenylalanine       0.0          0           0
 G glycine             0.0          0           0
 H histidine           7.0         16           1
 I isoleucine         21.1         48           1
 K lysine              0.0          0           0
 L leucine             0.4          1           1
 M methionine          7.9         18           1
 N asparagine          0.0          0           0
 P proline             0.0          0           0
 Q glutamine           0.4          1           1
 R arginine            0.9          2           1
 S serine              0.0          0           0
 T threonine           5.3         12           1
 V valine             13.2         30           1
 W tryptophan          0.0          0           0
 Y tyrosine           27.2         62           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133226          0.554   PREDICTED: hypothetical protein 
LOC100133450          0.470   PREDICTED: hypothetical protein, partial 
LOC100287975          0.470   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100129642          0.460   PREDICTED: hypothetical protein 
LOC100132016          0.458   PREDICTED: hypothetical protein 
LOC100129825          0.452   PREDICTED: hypothetical protein 
LOC100134060          0.450   PREDICTED: hypothetical protein 
LOC100293574          0.450   PREDICTED: hypothetical protein, partial 
LOC100288317          0.444   PREDICTED: hypothetical protein XP_002342505 
LOC100131203          0.426   PREDICTED: hypothetical protein 
LOC100291751          0.424   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100131203          0.424   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.424   PREDICTED: similar to serine/threonine-protein kina...
LOC100132983          0.422   PREDICTED: hypothetical protein 
LOC100133515          0.420   PREDICTED: hypothetical protein 
LOC100134279          0.410   PREDICTED: hypothetical protein, partial 
LOC100133741          0.410   PREDICTED: hypothetical protein 
LOC100134353          0.404   PREDICTED: hypothetical protein 
LOC100134730          0.402   PREDICTED: hypothetical protein 
LOC100132016          0.396   PREDICTED: hypothetical protein 
LOC100132679          0.396   PREDICTED: hypothetical protein 
LOC100132423          0.388   PREDICTED: hypothetical protein, partial 
LOC100134139          0.388   PREDICTED: hypothetical protein 
LOC100134332          0.386   PREDICTED: hypothetical protein, partial 
LOC100133975          0.382   PREDICTED: hypothetical protein, partial 
LOC100133807          0.367   PREDICTED: similar to serine/threonine-protein kina...
LOC100133173          0.367   PREDICTED: hypothetical protein 
LOC100134325          0.363   PREDICTED: hypothetical protein 
LOC100133844          0.361   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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