Guide to the Human Genome
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Name: LOC100293402 Sequence: fasta or formatted (146aa) NCBI GI: 239757469
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          5           3
 C cysteine            7.5         11           1
 D aspartate           1.4          2           1
 E glutamate           2.7          4           1
 F phenylalanine       1.4          2           1
 G glycine             4.1          6           2
 H histidine           6.2          9           1
 I isoleucine         14.4         21           1
 K lysine              2.1          3           1
 L leucine             2.1          3           1
 M methionine          5.5          8           1
 N asparagine          3.4          5           1
 P proline             3.4          5           1
 Q glutamine           2.7          4           1
 R arginine            8.2         12           2
 S serine              2.7          4           1
 T threonine           4.8          7           1
 V valine              6.2          9           1
 W tryptophan          1.4          2           1
 Y tyrosine           16.4         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289991          0.934   PREDICTED: hypothetical protein XP_002348094 
LOC100133807          0.316   PREDICTED: similar to serine/threonine-protein kina...
LOC100132983          0.296   PREDICTED: hypothetical protein 
LOC100134353          0.293   PREDICTED: hypothetical protein 
LOC100134730          0.286   PREDICTED: hypothetical protein 
LOC100133226          0.286   PREDICTED: hypothetical protein 
LOC100128267          0.280   PREDICTED: hypothetical protein, partial 
LOC100134332          0.273   PREDICTED: hypothetical protein, partial 
LOC100134411          0.273   PREDICTED: hypothetical protein 
LOC100289649          0.273   PREDICTED: hypothetical protein XP_002342367 
LOC100293574          0.270   PREDICTED: hypothetical protein, partial 
LOC100134279          0.270   PREDICTED: hypothetical protein, partial 
LOC100134060          0.266   PREDICTED: hypothetical protein 
LOC100133741          0.266   PREDICTED: hypothetical protein 
LOC100129825          0.266   PREDICTED: hypothetical protein 
LOC100132016          0.263   PREDICTED: hypothetical protein 
LOC100132016          0.263   PREDICTED: hypothetical protein 
LOC100134395          0.260   PREDICTED: hypothetical protein, partial 
LOC100294466          0.260   PREDICTED: hypothetical protein, partial 
LOC100133450          0.260   PREDICTED: hypothetical protein, partial 
LOC100287975          0.260   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100134576          0.260   PREDICTED: hypothetical protein 
LOC100133553          0.260   PREDICTED: hypothetical protein, partial 
LOC100294441          0.257   PREDICTED: hypothetical protein 
LOC100132782          0.257   PREDICTED: hypothetical protein 
LOC100288317          0.253   PREDICTED: hypothetical protein XP_002342505 
LOC100291872          0.253   PREDICTED: hypothetical protein XP_002345798 
LOC100133515          0.253   PREDICTED: hypothetical protein 
LOC100129642          0.253   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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