Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289649 Sequence: fasta or formatted (178aa) NCBI GI: 239741984
Description:

PREDICTED: hypothetical protein XP_002342367

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.1          2           1
 C cysteine           11.8         21           1
 D aspartate           0.0          0           0
 E glutamate           0.6          1           1
 F phenylalanine       0.0          0           0
 G glycine             0.0          0           0
 H histidine          16.9         30           1
 I isoleucine         14.0         25           1
 K lysine              0.0          0           0
 L leucine             1.1          2           1
 M methionine          9.0         16           1
 N asparagine          0.0          0           0
 P proline             0.6          1           1
 Q glutamine           0.0          0           0
 R arginine            0.6          1           1
 S serine              0.6          1           1
 T threonine          12.4         22           1
 V valine             11.8         21           1
 W tryptophan          0.0          0           0
 Y tyrosine           19.7         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342367 
LOC100134332          0.725   PREDICTED: hypothetical protein, partial 
LOC100131203          0.469   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.469   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.458   PREDICTED: hypothetical protein 
LOC100288317          0.456   PREDICTED: hypothetical protein XP_002342505 
LOC100133450          0.453   PREDICTED: hypothetical protein, partial 
LOC100287975          0.453   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100134411          0.446   PREDICTED: hypothetical protein 
LOC100132016          0.443   PREDICTED: hypothetical protein 
LOC100134139          0.438   PREDICTED: hypothetical protein 
LOC100132983          0.438   PREDICTED: hypothetical protein 
LOC100134325          0.428   PREDICTED: hypothetical protein 
LOC100132782          0.426   PREDICTED: hypothetical protein 
LOC100134730          0.426   PREDICTED: hypothetical protein 
LOC100134279          0.423   PREDICTED: hypothetical protein, partial 
LOC100133515          0.418   PREDICTED: hypothetical protein 
LOC100134395          0.418   PREDICTED: hypothetical protein, partial 
LOC100294466          0.418   PREDICTED: hypothetical protein, partial 
LOC100133226          0.418   PREDICTED: hypothetical protein 
LOC100128267          0.413   PREDICTED: hypothetical protein, partial 
LOC100132016          0.413   PREDICTED: hypothetical protein 
LOC100133173          0.408   PREDICTED: hypothetical protein 
LOC100293155          0.406   PREDICTED: hypothetical protein 
LOC100132679          0.406   PREDICTED: hypothetical protein 
LOC100291751          0.406   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100134060          0.406   PREDICTED: hypothetical protein 
LOC100133975          0.406   PREDICTED: hypothetical protein, partial 
LOC100133807          0.406   PREDICTED: similar to serine/threonine-protein kina...
LOC100129642          0.403   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press