Guide to the Human Genome
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Name: LOC100133975 Sequence: fasta or formatted (276aa) NCBI GI: 239755433
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         11           2
 C cysteine           10.9         30           1
 D aspartate           1.8          5           1
 E glutamate           2.5          7           1
 F phenylalanine       2.9          8           1
 G glycine             1.1          3           1
 H histidine           8.0         22           1
 I isoleucine         12.3         34           1
 K lysine              1.4          4           1
 L leucine             2.9          8           2
 M methionine          4.7         13           1
 N asparagine          0.4          1           1
 P proline             3.6         10           1
 Q glutamine           0.4          1           1
 R arginine            2.5          7           1
 S serine              5.4         15           4
 T threonine           8.7         24           1
 V valine             12.3         34           1
 W tryptophan          1.1          3           1
 Y tyrosine           13.0         36           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC100133226          0.338   PREDICTED: hypothetical protein 
LOC100134411          0.334   PREDICTED: hypothetical protein 
LOC100293574          0.324   PREDICTED: hypothetical protein, partial 
LOC100129825          0.319   PREDICTED: hypothetical protein 
LOC100133450          0.318   PREDICTED: hypothetical protein, partial 
LOC100287975          0.318   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100132016          0.318   PREDICTED: hypothetical protein 
LOC100288317          0.318   PREDICTED: hypothetical protein XP_002342505 
LOC100134139          0.307   PREDICTED: hypothetical protein 
LOC100291751          0.301   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100134395          0.297   PREDICTED: hypothetical protein, partial 
LOC100129642          0.297   PREDICTED: hypothetical protein 
LOC100133741          0.297   PREDICTED: hypothetical protein 
LOC100134279          0.291   PREDICTED: hypothetical protein, partial 
LOC100134353          0.291   PREDICTED: hypothetical protein 
LOC100132016          0.291   PREDICTED: hypothetical protein 
LOC100134332          0.289   PREDICTED: hypothetical protein, partial 
LOC100131203          0.287   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.287   PREDICTED: similar to serine/threonine-protein kina...
LOC100132679          0.285   PREDICTED: hypothetical protein 
LOC100132983          0.284   PREDICTED: hypothetical protein 
LOC100133807          0.282   PREDICTED: similar to serine/threonine-protein kina...
LOC100132782          0.282   PREDICTED: hypothetical protein 
LOC100134730          0.282   PREDICTED: hypothetical protein 
LOC100134060          0.280   PREDICTED: hypothetical protein 
LOC100294466          0.280   PREDICTED: hypothetical protein, partial 
LOC100293155          0.279   PREDICTED: hypothetical protein 
LOC100134325          0.277   PREDICTED: hypothetical protein 
LOC100134576          0.277   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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