Guide to the Human Genome
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Name: LOC100129642 Sequence: fasta or formatted (241aa) NCBI GI: 239750932
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.2          3           1
 C cysteine            6.2         15           1
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       1.2          3           1
 G glycine             0.4          1           1
 H histidine           7.9         19           1
 I isoleucine         19.1         46           1
 K lysine              0.8          2           1
 L leucine             2.9          7           1
 M methionine          3.3          8           1
 N asparagine          0.8          2           1
 P proline             0.4          1           1
 Q glutamine           0.4          1           1
 R arginine            0.8          2           1
 S serine              1.2          3           1
 T threonine          10.4         25           1
 V valine             13.3         32           1
 W tryptophan          0.0          0           0
 Y tyrosine           29.5         71           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100134060          0.513   PREDICTED: hypothetical protein 
LOC100134411          0.452   PREDICTED: hypothetical protein 
LOC100133226          0.450   PREDICTED: hypothetical protein 
LOC100131203          0.440   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.440   PREDICTED: similar to serine/threonine-protein kina...
LOC100288317          0.438   PREDICTED: hypothetical protein XP_002342505 
LOC100132679          0.419   PREDICTED: hypothetical protein 
LOC100133515          0.413   PREDICTED: hypothetical protein 
LOC100131203          0.409   PREDICTED: hypothetical protein 
LOC100134730          0.409   PREDICTED: hypothetical protein 
LOC100134332          0.403   PREDICTED: hypothetical protein, partial 
LOC100133173          0.393   PREDICTED: hypothetical protein 
LOC100132423          0.393   PREDICTED: hypothetical protein, partial 
LOC100134395          0.393   PREDICTED: hypothetical protein, partial 
LOC100133844          0.391   PREDICTED: hypothetical protein 
LOC100132983          0.389   PREDICTED: hypothetical protein 
LOC100132107          0.384   PREDICTED: hypothetical protein 
LOC100291751          0.384   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100134139          0.372   PREDICTED: hypothetical protein 
LOC100132016          0.366   PREDICTED: hypothetical protein 
LOC100129825          0.364   PREDICTED: hypothetical protein 
LOC100132016          0.364   PREDICTED: hypothetical protein 
LOC100132782          0.362   PREDICTED: hypothetical protein 
LOC100293574          0.360   PREDICTED: hypothetical protein, partial 
LOC100134279          0.360   PREDICTED: hypothetical protein, partial 
LOC100294466          0.360   PREDICTED: hypothetical protein, partial 
LOC100133776          0.356   PREDICTED: similar to hCG1820441 
LOC100133553          0.354   PREDICTED: hypothetical protein, partial 
LOC100134325          0.350   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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