Guide to the Human Genome
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Name: LOC100132782 Sequence: fasta or formatted (257aa) NCBI GI: 169176417
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.2          3           1
 C cysteine            5.4         14           1
 D aspartate           1.2          3           1
 E glutamate           3.9         10           2
 F phenylalanine       1.2          3           1
 G glycine             1.9          5           1
 H histidine           8.6         22           1
 I isoleucine         17.1         44           1
 K lysine              3.1          8           1
 L leucine             1.9          5           1
 M methionine          4.3         11           1
 N asparagine          2.7          7           1
 P proline             1.9          5           2
 Q glutamine           0.4          1           1
 R arginine            3.5          9           2
 S serine              3.1          8           1
 T threonine          10.1         26           1
 V valine              6.6         17           1
 W tryptophan          0.4          1           1
 Y tyrosine           21.4         55           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293369          0.364   PREDICTED: hypothetical protein 
LOC100290974          0.364   PREDICTED: hypothetical protein XP_002346910 
LOC100288317          0.344   PREDICTED: hypothetical protein XP_002342505 
LOC100133807          0.340   PREDICTED: similar to serine/threonine-protein kina...
LOC100129642          0.338   PREDICTED: hypothetical protein 
LOC100132983          0.333   PREDICTED: hypothetical protein 
LOC100133173          0.327   PREDICTED: hypothetical protein 
LOC100129802          0.327   PREDICTED: hypothetical protein 
LOC100134730          0.325   PREDICTED: hypothetical protein 
LOC100134060          0.325   PREDICTED: hypothetical protein 
LOC100134411          0.325   PREDICTED: hypothetical protein 
LOC100132679          0.324   PREDICTED: hypothetical protein 
LOC100133226          0.318   PREDICTED: hypothetical protein 
LOC100129825          0.318   PREDICTED: hypothetical protein 
LOC100132107          0.318   PREDICTED: hypothetical protein 
LOC100133515          0.314   PREDICTED: hypothetical protein 
LOC100131203          0.314   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.314   PREDICTED: similar to serine/threonine-protein kina...
LOC100291751          0.313   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100134325          0.313   PREDICTED: hypothetical protein 
LOC100134332          0.313   PREDICTED: hypothetical protein, partial 
LOC100131203          0.311   PREDICTED: hypothetical protein 
LOC100289649          0.311   PREDICTED: hypothetical protein XP_002342367 
LOC100134395          0.309   PREDICTED: hypothetical protein, partial 
LOC100129802          0.309   PREDICTED: hypothetical protein, partial 
LOC100134139          0.305   PREDICTED: hypothetical protein 
LOC100133975          0.305   PREDICTED: hypothetical protein, partial 
LOC100132423          0.303   PREDICTED: hypothetical protein, partial 
LOC100133450          0.303   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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