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Search of human proteins with 239751849
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751849 PREDICTED: hypothetical protein [Homo sapiens]
(491 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751849 PREDICTED: hypothetical protein [Homo sapiens] 999 0.0
gi|239757360 PREDICTED: hypothetical protein [Homo sapiens] 632 0.0
gi|239754683 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|169201827 PREDICTED: similar to hCG1798126 [Homo sapiens] 42 0.001
gi|169190743 PREDICTED: similar to hCG1798126 [Homo sapiens] 42 0.001
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 41 0.003
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 39 0.008
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.011
gi|169201475 PREDICTED: similar to hCG1798126, partial [Homo sap... 39 0.011
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 39 0.011
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 39 0.014
gi|48762934 alpha 2 type I collagen [Homo sapiens] 38 0.018
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 38 0.024
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 38 0.024
gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming... 38 0.024
gi|61102725 la related protein isoform 2 [Homo sapiens] 37 0.041
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 37 0.053
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 36 0.070
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 36 0.070
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 36 0.070
gi|171543895 ataxin 2 [Homo sapiens] 36 0.070
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 36 0.070
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 36 0.070
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 36 0.070
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 36 0.070
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 36 0.091
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 36 0.091
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 36 0.091
gi|116256481 TNFAIP3 interacting protein 1 [Homo sapiens] 35 0.12
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 35 0.12
>gi|239751849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 491
Score = 999 bits (2582), Expect = 0.0
Identities = 491/491 (100%), Positives = 491/491 (100%)
Query: 1 MTKKNIFLLFPCFFFKVITEQVVVDANLPSVSKVSVGQVVVGQVELLQRLEVVEGVALDG 60
MTKKNIFLLFPCFFFKVITEQVVVDANLPSVSKVSVGQVVVGQVELLQRLEVVEGVALDG
Sbjct: 1 MTKKNIFLLFPCFFFKVITEQVVVDANLPSVSKVSVGQVVVGQVELLQRLEVVEGVALDG 60
Query: 61 GYLGVHEPQLAQAGETLEGARADQVQPVARQLQLLQAHQGRQVGDVLEVAHAQVEVAQVD 120
GYLGVHEPQLAQAGETLEGARADQVQPVARQLQLLQAHQGRQVGDVLEVAHAQVEVAQVD
Sbjct: 61 GYLGVHEPQLAQAGETLEGARADQVQPVARQLQLLQAHQGRQVGDVLEVAHAQVEVAQVD 120
Query: 121 QPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQLPEPLRHPRL 180
QPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQLPEPLRHPRL
Sbjct: 121 QPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQLPEPLRHPRL 180
Query: 181 LLTPPAALERNGSRFYDGDVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQA 240
LLTPPAALERNGSRFYDGDVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQA
Sbjct: 181 LLTPPAALERNGSRFYDGDVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQA 240
Query: 241 TGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAIL 300
TGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAIL
Sbjct: 241 TGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAIL 300
Query: 301 NVHAPRGRWGAVGGGEKGERLGPVGASQQLQRLESDSWENLREREGWGRVSVSDYVSAVR 360
NVHAPRGRWGAVGGGEKGERLGPVGASQQLQRLESDSWENLREREGWGRVSVSDYVSAVR
Sbjct: 301 NVHAPRGRWGAVGGGEKGERLGPVGASQQLQRLESDSWENLREREGWGRVSVSDYVSAVR 360
Query: 361 VFIFLNVNREVNAQSLSWACRCHVYLRICPQLSRCQPASPHPHHGFCSDSASLPFPPPPS 420
VFIFLNVNREVNAQSLSWACRCHVYLRICPQLSRCQPASPHPHHGFCSDSASLPFPPPPS
Sbjct: 361 VFIFLNVNREVNAQSLSWACRCHVYLRICPQLSRCQPASPHPHHGFCSDSASLPFPPPPS 420
Query: 421 AISHPFLPTTPRSLPADSLSSLSGPLPFASDCILFVAVDPTAALSSLLSSHSPVAIPIPC 480
AISHPFLPTTPRSLPADSLSSLSGPLPFASDCILFVAVDPTAALSSLLSSHSPVAIPIPC
Sbjct: 421 AISHPFLPTTPRSLPADSLSSLSGPLPFASDCILFVAVDPTAALSSLLSSHSPVAIPIPC 480
Query: 481 LSPLCRRPLHL 491
LSPLCRRPLHL
Sbjct: 481 LSPLCRRPLHL 491
>gi|239757360 PREDICTED: hypothetical protein [Homo sapiens]
Length = 535
Score = 632 bits (1630), Expect = 0.0
Identities = 325/372 (87%), Positives = 326/372 (87%), Gaps = 42/372 (11%)
Query: 1 MTKKNIFLLFPCFFFKVITEQVVVDANLPSVSKVSVGQVVVGQVELLQRLEVVEGVALDG 60
MTKKNIFLLFPCFFFKVITEQVVVDANLPSVSKVSVGQVVVGQVELLQRLEVVEGVALDG
Sbjct: 1 MTKKNIFLLFPCFFFKVITEQVVVDANLPSVSKVSVGQVVVGQVELLQRLEVVEGVALDG 60
Query: 61 GYLGVHEPQLAQAGETLEGARADQVQPVARQLQLLQAHQGRQVGDVLEVAHAQVEVAQVD 120
GYLGVHEPQLAQAGETLEGARADQVQPVARQLQLLQAHQGRQVGDVLEVAHAQVEVAQVD
Sbjct: 61 GYLGVHEPQLAQAGETLEGARADQVQPVARQLQLLQAHQGRQVGDVLEVAHAQVEVAQVD 120
Query: 121 QPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQ---------- 170
QPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQ
Sbjct: 121 QPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQTPPGLPSALG 180
Query: 171 --------------------------------LPEPLRHPRLLLTPPAALERNGSRFYDG 198
LPEPLRHPRLLLTPPAALERNGSRFYDG
Sbjct: 181 KFSLYWKPCLGICLSPHSPLHGPSLAALTRIHLPEPLRHPRLLLTPPAALERNGSRFYDG 240
Query: 199 DVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQATGQEVAGGEPPPAADVTA 258
DVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQATGQEVAGGEPPPAADVTA
Sbjct: 241 DVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQATGQEVAGGEPPPAADVTA 300
Query: 259 TPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKG 318
TPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKG
Sbjct: 301 TPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKG 360
Query: 319 ERLGPVGASQQL 330
ERL V A+Q L
Sbjct: 361 ERLARVTATQHL 372
>gi|239754683 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 45.4 bits (106), Expect = 1e-04
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 170 QLPEPLRHPRLLLTPPAALERNGSRFYDGDVATAWGCWF------RYRVLTGMLAGTSAR 223
+L PL+ P + SR++ +AW W RYRV G+ GTS R
Sbjct: 38 RLARPLKAPTSICRMEFLPNCRTSRWWRWRKVSAWIIWMLFSMRLRYRVFEGIPCGTSER 97
Query: 224 SLRVQITRLAWLLQEQATGQ 243
RV T L WLL EQ GQ
Sbjct: 98 PRRVHTTLLNWLLHEQTEGQ 117
>gi|169201827 PREDICTED: similar to hCG1798126 [Homo sapiens]
Length = 269
Score = 42.0 bits (97), Expect = 0.001
Identities = 37/108 (34%), Positives = 42/108 (38%), Gaps = 12/108 (11%)
Query: 389 CPQLSRCQPASPHPHHGFC------SDSASLPFPPPPSAISHPFLPTTPR--SLPADSLS 440
CPQ HP G+C S LP PS +PFL T P LPA SLS
Sbjct: 51 CPQRGALGINLSHP--GYCWLVSKREPSRHLPVHVTPSCARYPFLCTLPHCFPLPATSLS 108
Query: 441 SLSGP-LPFASDCILFVAVDPTAALSSLLSSHSPVAIPIPCLSPLCRR 487
P L C P+ A L + SP P+P SP C R
Sbjct: 109 CARYPFLCTLPHCFPLPGTSPSCARYPFLCT-SPHCFPLPATSPSCAR 155
Score = 38.9 bits (89), Expect = 0.011
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 415 FPPP---PSAISHPFLPTTPRSLPADSLSSLSGPLPF---ASDCILFVAVDPTAALSSLL 468
FP P PS +PFL T+P P + S PF + C A P+ A L
Sbjct: 122 FPLPGTSPSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPATSPSCARYPFL 181
Query: 469 SSHSPVAIPIPCLSPLCRR 487
+ SP P+P SP C R
Sbjct: 182 CT-SPHCFPLPGTSPSCAR 199
Score = 29.6 bits (65), Expect = 6.5
Identities = 22/82 (26%), Positives = 26/82 (31%), Gaps = 21/82 (25%)
Query: 407 CSDSASLPFPPP-PSAISHPFLPTTPRSLPADSLSSLSGPLPFASDCILFVAVDPTAALS 465
C+ P P PS +PFL T+P P S PF
Sbjct: 160 CTSPHCFPLPATSPSCARYPFLCTSPHCFPLPGTSPSCARYPFLCT-------------- 205
Query: 466 SLLSSHSPVAIPIPCLSPLCRR 487
SP P+P SP C R
Sbjct: 206 ------SPHCFPLPGTSPSCAR 221
Score = 29.3 bits (64), Expect = 8.5
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 407 CSDSASLPFP-PPPSAISHPFLPTTPRSLPADSLSSLSGPLPFASDCILFVAVDPTAALS 465
C+ P P PS +PFL T+P P S PF C L + V T L
Sbjct: 182 CTSPHCFPLPGTSPSCARYPFLCTSPHCFPLPGTSPSCARYPFL--CTLPLPVHVTPLLP 239
Query: 466 SLLSSHSPVAIPIP 479
+ +P+P
Sbjct: 240 TAQDVTFLCTLPLP 253
>gi|169190743 PREDICTED: similar to hCG1798126 [Homo sapiens]
Length = 269
Score = 42.0 bits (97), Expect = 0.001
Identities = 37/108 (34%), Positives = 42/108 (38%), Gaps = 12/108 (11%)
Query: 389 CPQLSRCQPASPHPHHGFC------SDSASLPFPPPPSAISHPFLPTTPR--SLPADSLS 440
CPQ HP G+C S LP PS +PFL T P LPA SLS
Sbjct: 51 CPQRGALGINLSHP--GYCWLVSKREPSRHLPVHVTPSCARYPFLCTLPHCFPLPATSLS 108
Query: 441 SLSGP-LPFASDCILFVAVDPTAALSSLLSSHSPVAIPIPCLSPLCRR 487
P L C P+ A L + SP P+P SP C R
Sbjct: 109 CARYPFLCTLPHCFPLPGTSPSCARYPFLCT-SPHCFPLPATSPSCAR 155
Score = 38.9 bits (89), Expect = 0.011
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 415 FPPP---PSAISHPFLPTTPRSLPADSLSSLSGPLPF---ASDCILFVAVDPTAALSSLL 468
FP P PS +PFL T+P P + S PF + C A P+ A L
Sbjct: 122 FPLPGTSPSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPATSPSCARYPFL 181
Query: 469 SSHSPVAIPIPCLSPLCRR 487
+ SP P+P SP C R
Sbjct: 182 CT-SPHCFPLPGTSPSCAR 199
Score = 29.6 bits (65), Expect = 6.5
Identities = 22/82 (26%), Positives = 26/82 (31%), Gaps = 21/82 (25%)
Query: 407 CSDSASLPFPPP-PSAISHPFLPTTPRSLPADSLSSLSGPLPFASDCILFVAVDPTAALS 465
C+ P P PS +PFL T+P P S PF
Sbjct: 160 CTSPHCFPLPATSPSCARYPFLCTSPHCFPLPGTSPSCARYPFLCT-------------- 205
Query: 466 SLLSSHSPVAIPIPCLSPLCRR 487
SP P+P SP C R
Sbjct: 206 ------SPHCFPLPGTSPSCAR 221
Score = 29.3 bits (64), Expect = 8.5
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 407 CSDSASLPFP-PPPSAISHPFLPTTPRSLPADSLSSLSGPLPFASDCILFVAVDPTAALS 465
C+ P P PS +PFL T+P P S PF C L + V T L
Sbjct: 182 CTSPHCFPLPGTSPSCARYPFLCTSPHCFPLPGTSPSCARYPFL--CTLPLPVHVTPLLP 239
Query: 466 SLLSSHSPVAIPIP 479
+ +P+P
Sbjct: 240 TAQDVTFLCTLPLP 253
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 40.8 bits (94), Expect = 0.003
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 250 PPPAADVTATPPPPAPRG--------GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 301
PP A P P PRG G++ Q+ G LPG G +GE + I
Sbjct: 1111 PPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPG 1170
Query: 302 VHAPRGRWGAVGGGEKGERLGPVG 325
PRG G VG K GP+G
Sbjct: 1171 PFGPRGPPGPVGPSGKEGNPGPLG 1194
Score = 36.2 bits (82), Expect = 0.070
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 263 PAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAIL---NVHAPRGRWGAVGGGEK 317
P P+G GE+ S+ P G PG G G P AR + V P G+ G +G +
Sbjct: 536 PGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGE 595
Query: 318 GERLGPVGA 326
R GP G+
Sbjct: 596 DGRPGPPGS 604
Score = 32.0 bits (71), Expect = 1.3
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 241 TGQEVAGGEPPPAADVTATPPPPAP-RGGEKSQRKSNAPWGQDILPGGSGGHGEPRA--- 296
TG G+P P + + P P + GE + N G+ G G G P A
Sbjct: 236 TGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGL 295
Query: 297 ------RAILNVHAPRGRWGAVGGGEKGERLGPVGA 326
R + P+G GA G + GP+GA
Sbjct: 296 PGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGA 331
Score = 31.6 bits (70), Expect = 1.7
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAI 299
GQ+ G P P + +P P P G G K R + P G PG +G G P
Sbjct: 867 GQKGDAGSPGPQG-LAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPP----- 920
Query: 300 LNVHAPRGRWGAVGG-GEKGERLGPVG 325
P G G G GE G+ GP G
Sbjct: 921 ----GPAGAPGPAGPLGEPGKE-GPPG 942
Score = 30.8 bits (68), Expect = 2.9
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 238 EQATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQ---RKSNAPWGQDILPGGSGGHGEP 294
E G + A G P P PP PA GEK + R P G PG G +G
Sbjct: 788 EGTAGNDGARGLPGPLG-----PPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPT 842
Query: 295 RARAILNVHAPRGRWGAVG-GGEKGER 320
A P G+ G G GE G++
Sbjct: 843 GAVGFAGPQGPDGQPGVKGEPGEPGQK 869
Score = 30.4 bits (67), Expect = 3.8
Identities = 32/104 (30%), Positives = 36/104 (34%), Gaps = 26/104 (25%)
Query: 250 PPPAADVTATPPPPAPRG--------GEKSQRKSNAPWGQ---------DILPGGSGGHG 292
PP A T P PRG G R N P G D PG G G
Sbjct: 805 PPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPG 864
Query: 293 EPRARAILNVHAPRGRWGAVG-------GGEKGER--LGPVGAS 327
EP + P+G G+ G G KG R GP GA+
Sbjct: 865 EPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGAT 908
Score = 29.6 bits (65), Expect = 6.5
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 247 GGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPR 306
G + P + T+ PP A G + S P G PG G G P
Sbjct: 429 GAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPH 488
Query: 307 GRWGAVG-GGEKGERLGPVG 325
G G +G GE+G+R GP G
Sbjct: 489 GIQGPIGPPGEEGKR-GPRG 507
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 39.3 bits (90), Expect = 0.008
Identities = 30/86 (34%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 240 ATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAI 299
A G+ G P+ D P P P G EK + G D PG GG GE R
Sbjct: 378 ADGEAGRPGSSGPSGD-EGQPGEPGPPG-EKGEAGDEGNPGPDGAPGERGGPGERGPRGT 435
Query: 300 LNVHAPRGRWGAVGGGEKGERLGPVG 325
PRG G G R GPVG
Sbjct: 436 PGTRGPRGDPGEAGPQGDQGREGPVG 461
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.9 bits (89), Expect = 0.011
Identities = 38/100 (38%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 240 ATGQEVAGGEPPPA-ADVTATPP-------PPAPRG-----GEKSQRKSNAPWGQDILPG 286
A GQ A GEP A A A PP PP P G G K R S P G PG
Sbjct: 819 ADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPG 878
Query: 287 GSGGHGEPRARAILNVHAPRGRWGAVGG-GEKGERLGPVG 325
+G G P P G G GG G +GE GP G
Sbjct: 879 AAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE-TGPAG 917
Score = 36.6 bits (83), Expect = 0.053
Identities = 28/81 (34%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILP---GGSGGHGEPRARA 298
G A GEP P PP PA G++ R P G P GG G G P A
Sbjct: 443 GDTGAKGEPGPVG--VQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADG 500
Query: 299 ILNVHAPRGRWGAVG-GGEKG 318
+ P G G+ G G KG
Sbjct: 501 VAGPKGPAGERGSPGPAGPKG 521
Score = 33.9 bits (76), Expect = 0.35
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 251 PPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWG 310
P A +T +P P P G + P GQD PG G G ++ P+G G
Sbjct: 535 PGAKGLTGSPGSPGPDG----KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAG 590
Query: 311 AVG-GGEKGERLGPVGA 326
G GE+G GP GA
Sbjct: 591 EPGKAGERGVP-GPPGA 606
Score = 33.9 bits (76), Expect = 0.35
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 240 ATGQEVAGGEP--PPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRAR 297
A G A GE P V P P PRG +N G D G +G G P ++
Sbjct: 669 APGPSGARGERGFPGERGVQGPPGPAGPRG-------ANGAPGNDGAKGDAGAPGAPGSQ 721
Query: 298 AILNVHAPRGRWGAVG-GGEKGER--LGPVGA 326
+ G GA G G KG+R GP GA
Sbjct: 722 GAPGLQGMPGERGAAGLPGPKGDRGDAGPKGA 753
Score = 33.9 bits (76), Expect = 0.35
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 301
G+ G P PP P GEK ++ P G PG G G R ++
Sbjct: 906 GKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG---APGTPGPQGIAGQRGVVG 962
Query: 302 VHAPRGRWGAVG----GGEKGERLGPVGAS 327
+ RG G G GE G++ GP GAS
Sbjct: 963 LPGQRGERGFPGLPGPSGEPGKQ-GPSGAS 991
Score = 32.3 bits (72), Expect = 1.0
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 250 PPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRG 307
PP A P PP P G G+ P G PG +G G P + G
Sbjct: 555 PPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDG 614
Query: 308 RWGAVG-------GGEKGERLGPVGA 326
GA G GE+GE+ GP G+
Sbjct: 615 EAGAQGPPGPAGPAGERGEQ-GPAGS 639
Score = 30.8 bits (68), Expect = 2.9
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 260 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG-GEKG 318
PP PA G+K + + P G G G GEP P G G G GE G
Sbjct: 771 PPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG 830
Query: 319 E 319
+
Sbjct: 831 D 831
Score = 30.0 bits (66), Expect = 5.0
Identities = 24/78 (30%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 247 GGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPR 306
G P PP P GE S G PG G G P R
Sbjct: 413 GARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGAR 472
Query: 307 GRWGAVG-GGEKGERLGP 323
G G G G GER GP
Sbjct: 473 GEPGPTGLPGPPGERGGP 490
Score = 29.3 bits (64), Expect = 8.5
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 252 PAADVTATPPPPA-------PRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHA 304
P AD A P PA P G + S ++ P G+ LPG G G P +
Sbjct: 496 PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRP-GEAGLPGAKGLTGSPGS------PG 548
Query: 305 PRGRWGAVGGGEKGERLGPVG 325
P G+ G G + R GP G
Sbjct: 549 PDGKTGPPGPAGQDGRPGPPG 569
>gi|169201475 PREDICTED: similar to hCG1798126, partial [Homo
sapiens]
Length = 190
Score = 38.9 bits (89), Expect = 0.011
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 415 FPPP---PSAISHPFLPTTPRSLPADSLSSLSGPLPF---ASDCILFVAVDPTAALSSLL 468
FP P PS +PFL T+P P + S PF + C A P+ A L
Sbjct: 43 FPLPGTSPSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPATSPSCARYPFL 102
Query: 469 SSHSPVAIPIPCLSPLCRR 487
+ SP P+P SP C R
Sbjct: 103 CT-SPHCFPLPGTSPSCAR 120
Score = 36.2 bits (82), Expect = 0.070
Identities = 28/77 (36%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 414 PFPPPPSAISHPFLPTTPR--SLPADSLSSLSGP-LPFASDCILFVAVDPTAALSSLLSS 470
P PS +PFL T P LPA SLS P L C P+ A L +
Sbjct: 1 PVHVTPSCARYPFLCTLPHCFPLPATSLSCARYPFLCTLPHCFPLPGTSPSCARYPFLCT 60
Query: 471 HSPVAIPIPCLSPLCRR 487
SP P+P SP C R
Sbjct: 61 -SPHCFPLPATSPSCAR 76
Score = 29.6 bits (65), Expect = 6.5
Identities = 22/82 (26%), Positives = 26/82 (31%), Gaps = 21/82 (25%)
Query: 407 CSDSASLPFPPP-PSAISHPFLPTTPRSLPADSLSSLSGPLPFASDCILFVAVDPTAALS 465
C+ P P PS +PFL T+P P S PF
Sbjct: 81 CTSPHCFPLPATSPSCARYPFLCTSPHCFPLPGTSPSCARYPFLCT-------------- 126
Query: 466 SLLSSHSPVAIPIPCLSPLCRR 487
SP P+P SP C R
Sbjct: 127 ------SPHCFPLPGTSPSCAR 142
Score = 29.3 bits (64), Expect = 8.5
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 407 CSDSASLPFP-PPPSAISHPFLPTTPRSLPADSLSSLSGPLPFASDCILFVAVDPTAALS 465
C+ P P PS +PFL T+P P S PF C L + V T L
Sbjct: 103 CTSPHCFPLPGTSPSCARYPFLCTSPHCFPLPGTSPSCARYPFL--CTLPLPVHVTPLLP 160
Query: 466 SLLSSHSPVAIPIP 479
+ +P+P
Sbjct: 161 TAQDVTFLCTLPLP 174
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 38.9 bits (89), Expect = 0.011
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 246 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 305
AGG P + P PA + G + +R P G+D +PG G G P A
Sbjct: 1018 AGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGD 1077
Query: 306 RGRWGAVG-GGEKGER--LGPVG 325
+G GA G G KG++ GP G
Sbjct: 1078 KGDVGAPGHKGSKGDKGDAGPPG 1100
Score = 35.0 bits (79), Expect = 0.16
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 238 EQATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRAR 297
E+ +V G PP A+ P PP RG + G++ G G GEP
Sbjct: 1284 EKGDPGDVGGPGPPGASGEPGAPGPPGKRG-------PSGHMGREGREGEKGAKGEP--- 1333
Query: 298 AILNVHAPRGRWGAVGGGEKGERLGPVG 325
P GR G +G R+GP G
Sbjct: 1334 ---GPDGPPGRTGPMGARGPPGRVGPEG 1358
Score = 33.9 bits (76), Expect = 0.35
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 262 PPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG-GEKGER 320
PP P G E P G PG GG G+P + P G GA G GE+G
Sbjct: 963 PPGPLGKE-------GPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGP- 1014
Query: 321 LGPVG 325
LGP G
Sbjct: 1015 LGPAG 1019
Score = 32.0 bits (71), Expect = 1.3
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 242 GQEVAGGEPPPAADV--------TATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGH 291
G A G P P D+ + PP +G GE + S P G LPG G
Sbjct: 1214 GPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTG---LPGDLGPP 1270
Query: 292 GEPRARAILNVHAPRGRWGAVGGGEKGERLGPVGAS 327
G+P I +G G VGG GP GAS
Sbjct: 1271 GDPGVSGIDGSPGEKGDPGDVGGP------GPPGAS 1300
Score = 31.6 bits (70), Expect = 1.7
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 245 VAGGEPPPAADVTATPP-PPAPRGGEKSQRKSNAPWGQDIL--PGGSGGHGEPRARAILN 301
V G + P A PP P P G + + P Q ++ PG G G P +
Sbjct: 618 VTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPG 677
Query: 302 VHAPRGRWGAVG-GGEKGERLGPVGAS 327
P G G G GEKG + GP G++
Sbjct: 678 SDGPLGHPGHEGPTGEKGAQ-GPPGSA 703
Score = 30.0 bits (66), Expect = 5.0
Identities = 25/85 (29%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 242 GQEVAGGEPPPAA-DVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAIL 300
G + G+P P PP P G +R P G LPG SG G
Sbjct: 980 GPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKK 1039
Query: 301 NVHAPRGRWGAVGGGEKGERLGPVG 325
RG G G LGP+G
Sbjct: 1040 GSRGERGPPGPTGKDGIPGPLGPLG 1064
Score = 29.6 bits (65), Expect = 6.5
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 250 PPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRW 309
PP + P P G + +Q + P G G G+ R + V P G
Sbjct: 1098 PPGQPGIRGPAGHPGPPGADGAQGRRGPP-------GLFGQKGDDGVRGFVGVIGPPGLQ 1150
Query: 310 GAVG-GGEKGERLGPVGA 326
G G GEKGE +G VG+
Sbjct: 1151 GLPGPPGEKGE-VGDVGS 1167
Score = 29.6 bits (65), Expect = 6.5
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 20/92 (21%)
Query: 248 GEPPPAADVTATPP--PPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRA------RAI 299
GE DV + P P PRG + P G + PG GG G+P A R
Sbjct: 1157 GEKGEVGDVGSMGPHGAPGPRGPQ-------GPTGSEGTPGLPGGVGQPGAVGEKGERGD 1209
Query: 300 LNVHAPRGRWGAVGG----GEKGERLGPVGAS 327
P G G G GEKG+ GP GA+
Sbjct: 1210 AGDPGPPGAPGIPGPKGDIGEKGDS-GPSGAA 1240
Score = 29.3 bits (64), Expect = 8.5
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 18/73 (24%)
Query: 260 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVH---APRGRWGAVG--- 313
P PP GE +R + P PG +G GEP R +L P GR G G
Sbjct: 574 PGPP----GEDGERGAEGP------PGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDG 623
Query: 314 -GGEKGERLGPVG 325
G KG +GP G
Sbjct: 624 APGAKG-NVGPPG 635
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 38.5 bits (88), Expect = 0.014
Identities = 33/90 (36%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 241 TGQEVAGGEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARA 298
+G G P PA A P P PRG GE +R + G PG G G P
Sbjct: 1067 SGPAGPAGAPGPAGSRGA-PGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSP---- 1121
Query: 299 ILNVHAPRGRWGAVGG-GEKGERLGPVGAS 327
P G+ GA+G G G R GPVG S
Sbjct: 1122 -----GPAGQQGAIGSPGPAGPR-GPVGPS 1145
Score = 33.9 bits (76), Expect = 0.35
Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 250 PPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRG 307
PP + + P PP P G G+ P G D PG +G G P G
Sbjct: 553 PPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNG 612
Query: 308 RWGAVG-------GGEKGERLGPVGASQQLQRL 333
G G GG+KG+ GP G Q LQ L
Sbjct: 613 ETGPQGPPGPTGPGGDKGD-TGPPG-PQGLQGL 643
Score = 33.9 bits (76), Expect = 0.35
Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 240 ATGQEVAGGEP----PPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPR 295
A G++ GG P PP A PP P G K +R S PGG G G P
Sbjct: 829 APGEKGEGGPPGVAGPPGGSGPAGPPGPQ---GVKGERGS---------PGGPGAAGFPG 876
Query: 296 ARAILNVHAPRGRWGAVGGGEKGERLGPVG 325
AR + G G G + GP G
Sbjct: 877 ARGLPGPPGSNGNPGPPGPSGSPGKDGPPG 906
Score = 33.1 bits (74), Expect = 0.59
Identities = 31/106 (29%), Positives = 36/106 (33%), Gaps = 25/106 (23%)
Query: 248 GEPPPAADVTATPPPPAPRGGEKSQRKSNAPWG--------------QDILPGGSGGHGE 293
GE PA + A P P PRG + P G D PG G GE
Sbjct: 501 GEKGPAGERGA-PGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGE 559
Query: 294 PRARAILNVHAPRGRWGAVG----------GGEKGERLGPVGASQQ 329
PRG+ G +G G+ GER GP G Q
Sbjct: 560 SGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQ 605
Score = 33.1 bits (74), Expect = 0.59
Identities = 26/70 (37%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 260 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG----G 315
PP P GG+K P G LPG G GE G GA GG G
Sbjct: 619 PPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAG 678
Query: 316 EKGERLGPVG 325
GER GP G
Sbjct: 679 APGER-GPPG 687
Score = 33.1 bits (74), Expect = 0.59
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 245 VAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHA 304
V G + P PP PA + G+K + G LPG +G G P R
Sbjct: 754 VPGKDGPRGPTGPIGPPGPAGQPGDKGEG------GAPGLPGIAGPRGSPGERGETGPPG 807
Query: 305 PRGRWGAVG----GGEKGERLGP 323
P G GA G G KGER P
Sbjct: 808 PAGFPGAPGQNGEPGGKGERGAP 830
Score = 32.3 bits (72), Expect = 1.0
Identities = 30/86 (34%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRG-GEKSQRKSNAPWGQDILPGGSGGHGEPRARAIL 300
G+ GEP P D A P AP G G+ P G PG GG G P
Sbjct: 651 GENGKPGEPGPKGDAGA---PGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGK 707
Query: 301 NVHAPRGRWGAVG----GGEKGERLG 322
P G GA G G GER G
Sbjct: 708 GAAGPPGPPGAAGTPGLQGMPGERGG 733
Score = 32.3 bits (72), Expect = 1.0
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 251 PPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGR 308
P A P PP P G G+ R + P G PG +G G P PRG
Sbjct: 1040 PGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAP------GPQGPRGD 1093
Query: 309 WGAVG----GGEKGER 320
G G G KG R
Sbjct: 1094 KGETGERGAAGIKGHR 1109
Score = 31.6 bits (70), Expect = 1.7
Identities = 29/96 (30%), Positives = 33/96 (34%), Gaps = 25/96 (26%)
Query: 247 GGEPPPAAD----VTATPPPPAPRG--------GEKSQRKSNAPWGQDILPGGSGGHGEP 294
GG PP + P PP G GE+ S P G PGG G G P
Sbjct: 696 GGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVP 755
Query: 295 RARAILNVHAPRGRWGAVG-------GGEKGERLGP 323
PRG G +G G+KGE P
Sbjct: 756 ------GKDGPRGPTGPIGPPGPAGQPGDKGEGGAP 785
Score = 31.2 bits (69), Expect = 2.2
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRG-GEKSQRKSNAPWGQDILPGGSGGHGEPRARAIL 300
G+ A GEP P + P P GE + S G + LPG +G G P R
Sbjct: 435 GKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPA 494
Query: 301 NVHAPRGRWGAVGGGEKGERLGPVGAS 327
+ G G G GP GA+
Sbjct: 495 GPNGIPGEKGPAGERGAPGPAGPRGAA 521
Score = 31.2 bits (69), Expect = 2.2
Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 18/102 (17%)
Query: 243 QEVAGGEPPPAAD-VTATPPPPAPRG-----------GEKSQRKSNAPWGQDILPGGSGG 290
Q V G P A+ ++ PP P+G G S+ G+D PGG G
Sbjct: 974 QGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGD 1033
Query: 291 HGE---PRARAILNVHAPRGRWGAVG-GGEKGER--LGPVGA 326
GE P A P G G G G++GE GP GA
Sbjct: 1034 RGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGA 1075
Score = 30.8 bits (68), Expect = 2.9
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 248 GEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRG 307
G P ++ P AP G R P G + PG GG GEP PRG
Sbjct: 390 GSPGGKGEMGPAGIPGAP--GLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRG 447
Query: 308 RWGAVG----GGEKGE 319
G G G KGE
Sbjct: 448 ERGEAGIPGVPGAKGE 463
Score = 30.4 bits (67), Expect = 3.8
Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 260 PPPPAPRG-----GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG 314
P PP P G G + P G G G GEP + P G G G
Sbjct: 332 PGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGS 391
Query: 315 -GEKGERLGPVG 325
G KGE +GP G
Sbjct: 392 PGGKGE-MGPAG 402
Score = 30.0 bits (66), Expect = 5.0
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 260 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVG----GG 315
P P PRG + G+ LPG +G G AR P G G G G
Sbjct: 296 PGPMGPRGAPGER-------GRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPG 348
Query: 316 EKGERLGPVGA 326
KGE +GP G+
Sbjct: 349 AKGE-VGPAGS 358
Score = 29.6 bits (65), Expect = 6.5
Identities = 27/80 (33%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 248 GEPPPAADVTATPPPPAPR-GGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPR 306
GEP P A PP P G + P G PG G G P R
Sbjct: 369 GEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLR 428
Query: 307 GRWGAVG-GGEKGERLGPVG 325
G G G G KGE GP G
Sbjct: 429 GGAGEPGKNGAKGEP-GPRG 447
Score = 29.3 bits (64), Expect = 8.5
Identities = 31/92 (33%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 241 TGQEVAG--GEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRA 296
+G V G G P PA P PP P G G S G PG +G G P
Sbjct: 162 SGVAVGGLAGYPGPAGP----PGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGP 217
Query: 297 RAILNVHAPRGRWGAVG-GGEKGER--LGPVG 325
+ P G+ G G G GER GP G
Sbjct: 218 PGAIGPSGPAGKDGESGRPGRPGERGLPGPPG 249
Score = 29.3 bits (64), Expect = 8.5
Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 245 VAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHA 304
+AG P PP PA G Q G+ PG G G P V
Sbjct: 790 IAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPP------GVAG 843
Query: 305 PRGRWGAVG----GGEKGERLGPVG 325
P G G G G KGER P G
Sbjct: 844 PPGGSGPAGPPGPQGVKGERGSPGG 868
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 38.1 bits (87), Expect = 0.018
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 237 QEQATGQEVAGGEPPPAADV-------TATPPPPAPRGGEKSQRKSNAPWGQDILPGGSG 289
++ A G A G P PA A P PA G +R P G + G +G
Sbjct: 671 RDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAG 730
Query: 290 GHGEPRARAILNVHAPRGRWGAVGGGEKGERLGPVGAS 327
G+P A+ P+G G VG GPVGA+
Sbjct: 731 AAGQPGAKGERGAKGPKGENGVVG------PTGPVGAA 762
Score = 34.3 bits (77), Expect = 0.26
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 246 AGGEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVH 303
A G P P + PP P+G G K ++ P G LPG SG GE +H
Sbjct: 518 ARGAPGPDGN-NGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLH 576
Query: 304 APRGRWGAVG-GGEKGERLGPVGAS 327
G +G G G +GER GP G S
Sbjct: 577 ---GEFGLPGPAGPRGER-GPPGES 597
Score = 33.5 bits (75), Expect = 0.45
Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 240 ATGQEVAGGEPPPAADVTATPP-----PPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEP 294
A G + G P V A P PP P G R P G PG +G G P
Sbjct: 743 AKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGS----RGDGGPPGMTGFPGAAGRTGPP 798
Query: 295 RARAILNVHAPRGRWGAVG-GGEKGERLGPVGASQQL 330
I P G G G G +G++ GPVG + ++
Sbjct: 799 GPSGISGPPGPPGPAGKEGLRGPRGDQ-GPVGRTGEV 834
Score = 33.1 bits (74), Expect = 0.59
Identities = 29/96 (30%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 240 ATGQEVAGGEPPPAADV----------TATPPPPAPRGGEKSQRKSNAPWGQDILPGGSG 289
ATG GEP PA +A P P GE+ +R N G PG G
Sbjct: 338 ATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPG 397
Query: 290 GHGEPRARAILNVHAPRGRWGAVGGGEKGERLGPVG 325
G P +R + GR G +G GP G
Sbjct: 398 LRGSPGSRGLPGAD---GRAGVMGPPGSRGASGPAG 430
Score = 32.7 bits (73), Expect = 0.77
Identities = 36/125 (28%), Positives = 43/125 (34%), Gaps = 37/125 (29%)
Query: 240 ATGQEVAGGEPPPAADVTATPPP--PAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPR 295
A G GE P+ + PP P P+G G G+ LPG +G GEP
Sbjct: 836 AVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPG 895
Query: 296 ARAILNVHAPRGRWGAVGG----------------------------GEKGER-----LG 322
I RG GAVG G KGER +G
Sbjct: 896 PLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIG 955
Query: 323 PVGAS 327
PVGA+
Sbjct: 956 PVGAA 960
Score = 30.0 bits (66), Expect = 5.0
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 248 GEPPPAADV-TATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAIL---NVH 303
GEP V TA P P+ GE+ G +PGG G GEP R +
Sbjct: 622 GEPGVVGAVGTAGPSGPSGLPGER---------GAAGIPGGKGEKGEPGLRGEIGNPGRD 672
Query: 304 APRGRWGAVGG-------GEKGE--RLGPVG 325
RG GAVG G++GE GP G
Sbjct: 673 GARGAPGAVGAPGPAGATGDRGEAGAAGPAG 703
Score = 29.3 bits (64), Expect = 8.5
Identities = 27/91 (29%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 248 GEPPPAADVTATPP--PPAPRG--GEKSQRKSNAPWGQ---------DILPGGSGGHGEP 294
G P A P P P+G G+K + P G LPG +G HG+
Sbjct: 982 GPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQ 1041
Query: 295 RARAILNVHAPRGRWGAVGGGEKGERLGPVG 325
A + PRG G G K R G G
Sbjct: 1042 GAPGSVGPAGPRGPAGPSGPAGKDGRTGHPG 1072
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 37.7 bits (86), Expect = 0.024
Identities = 68/263 (25%), Positives = 92/263 (34%), Gaps = 43/263 (16%)
Query: 237 QEQATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDIL---PGGSGGHGE 293
+ +A G EV G P PA PP PR S + + P GG
Sbjct: 179 RSRAAGTEV--GLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQR 236
Query: 294 PRARAILNVHAPRGRWGAVGGGEKGERLGPVGASQQ----LQRLESDSWENLRE--REGW 347
P +R++ + P G +G P SQ LQ L R+
Sbjct: 237 PASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPAL 296
Query: 348 GRVSVSDYVSAVRVFIFLNVNREVNAQSLSWACRCHVYLRICPQLSRCQPASPHPHHGFC 407
G +S S + S S A + Q PA+PH C
Sbjct: 297 GPLSSSPLATP----------------SPSAALQS--------QAPPTLPATPHSSSLTC 332
Query: 408 SDSASLPF-PPPPSA-ISHPFLPTTPRSLPADSLSSLSGPLPFASDCILFVAVDPTAALS 465
+ LP PP PSA S LP+ P + P+ + +SL P A+ L P+ LS
Sbjct: 333 QLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFL-----PSPPLS 387
Query: 466 SLLSSHSPVAIPIPCLSPLCRRP 488
L++ P A P L PL P
Sbjct: 388 P-LATPPPQAPPALALPPLQAPP 409
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 37.7 bits (86), Expect = 0.024
Identities = 32/91 (35%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 247 GGEPPPAADVTATPPPPAPRG--------GEKSQRKSNAPWGQDILPGGSGGHGEPRARA 298
GG P + P P P+G GEK + AP LPG G GE R
Sbjct: 1416 GGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPG----LPGQPGSPGEQGPRG 1471
Query: 299 ILNVHAPRGRWGAVG----GGEKGERLGPVG 325
P+G G G GEKGER GP G
Sbjct: 1472 PPGAIGPKGDRGFPGPLGEAGEKGER-GPPG 1501
Score = 33.5 bits (75), Expect = 0.45
Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 241 TGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQD-----------ILPGGSG 289
TG++ GEP D P A GEK P G +LPG G
Sbjct: 1527 TGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPG 1586
Query: 290 GHGEPRARAILNVHAPRGRWGAVG-GGEKGE--RLGPVG 325
G+P R + + G G G GEKG+ R GP G
Sbjct: 1587 PKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPG 1625
Score = 33.5 bits (75), Expect = 0.45
Identities = 31/97 (31%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRG------------GEKSQRKSNAPWGQDILPGGSG 289
G+ + G P D P PP P G GE R P G PG G
Sbjct: 1682 GRNGSPGSSGPKGD-RGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPG 1740
Query: 290 GHGEPRARAILNVHAPRGRWGAVG-GGEKGERLGPVG 325
GE P+G G G GEKG+R GP G
Sbjct: 1741 APGERGIEGFRGPPGPQGDPGVRGPAGEKGDR-GPPG 1776
Score = 33.5 bits (75), Expect = 0.45
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 301
G +V+ EP P PP GE P G +PG G GEP
Sbjct: 2091 GPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEP------- 2143
Query: 302 VHAPRGRWGAVG-GGEKGERLGPVG 325
PRG+ G G GE+G GP G
Sbjct: 2144 --GPRGQDGNPGLPGERG-MAGPEG 2165
Score = 32.7 bits (73), Expect = 0.77
Identities = 29/81 (35%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 248 GEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 305
GEP P P P RG G + + P G PG GGHG+P + P
Sbjct: 2141 GEPGPRGQ-DGNPGLPGERGMAGPEGKPGLQGPRGP---PGPVGGHGDPGPPGAPGLAGP 2196
Query: 306 RGRWGAVG-GGEKGERLGPVG 325
G G G GE GE GP G
Sbjct: 2197 AGPQGPSGLKGEPGE-TGPPG 2216
Score = 32.3 bits (72), Expect = 1.0
Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAI 299
G + A GEP D P RG G K R P GQD PG G G
Sbjct: 2111 GLKGAKGEPGSNGD----QGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGK 2166
Query: 300 LNVHAPRGRWGAVGG-GEKG 318
+ PRG G VGG G+ G
Sbjct: 2167 PGLQGPRGPPGPVGGHGDPG 2186
Score = 31.2 bits (69), Expect = 2.2
Identities = 34/108 (31%), Positives = 40/108 (37%), Gaps = 27/108 (25%)
Query: 242 GQEVAGGEPPPAADVTATPPP-----PAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEP 294
GQ + GE P A P P P G GEK +R P G LPG + G P
Sbjct: 1459 GQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVA---GRP 1515
Query: 295 RARAILNVHAPRGRWGAVG---------------GGEKGER--LGPVG 325
A+ P GR G G G KGE+ +GP G
Sbjct: 1516 GAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAG 1563
Score = 31.2 bits (69), Expect = 2.2
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 237 QEQATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPW----------GQDILPG 286
++ A+G++ G P V +P P P G + + AP G+ PG
Sbjct: 2261 RDGASGKDGDRGSP----GVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPG 2316
Query: 287 GSGGH--GEPRARAILNVHAPRGRWGAVG-GGEKGE 319
G G GEP A+ + PRG G G GE G+
Sbjct: 2317 GLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGD 2352
Score = 30.0 bits (66), Expect = 5.0
Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 242 GQEVAGGEP--PPAADVTATPPPPAPRG--GEKSQR----KSNAPWGQDI------LPGG 287
G G P P A + +P P PRG GE+ R + AP GQ I LPG
Sbjct: 1308 GSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAP-GQVIGGEGPGLPGR 1366
Query: 288 SGG---HGEPRARAILNVHAPRGRWGAVGGGEKGER 320
G G P R L PRG G G KG++
Sbjct: 1367 KGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDK 1402
>gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming
sequence-like 1 [Homo sapiens]
Length = 491
Score = 37.7 bits (86), Expect = 0.024
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 396 QPASPHPHHGFCSDSASLPFPPPPSAISHPFLPTTPRSLPADSLSSLSGPLP 447
QP HPHH P PPPP ISHP +P P++ L P P
Sbjct: 325 QPVVSHPHHIMPPQQHYAPPPPPPPPISHP-MPHPPQAAGTPHLVYSQAPPP 375
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 37.0 bits (84), Expect = 0.041
Identities = 33/98 (33%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 233 AWLLQEQATGQEVAGGEPPPAADVTATPPPPAPRGGEK--SQRKSNAPWGQDILPG-GSG 289
A LLQ + G V +PPPA + P P RGGE S R+ P + G G
Sbjct: 13 ATLLQAEEHGGLVRK-KPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQ 71
Query: 290 GHGEPRARAILNVHAPRGRWGAVGGGEKGERLGPVGAS 327
PR + P G GGGE G G GA+
Sbjct: 72 ERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAA 109
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 36.6 bits (83), Expect = 0.053
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 240 ATGQE-VAG--GEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRA 296
ATG+ +AG G+P P P PP G + + K P G+ G G G+P A
Sbjct: 1318 ATGERGLAGLPGQPGPPGH----PGPPGEPGTDGAAGKEGPP-GKQGFYGPPGPKGDPGA 1372
Query: 297 RAILNVHAPRGRWGAVGGGEKGERLGPVG 325
+GR G GG K +GPVG
Sbjct: 1373 AGQKGQAGEKGRAGMPGGPGKSGSMGPVG 1401
Score = 31.2 bits (69), Expect = 2.2
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 255 DVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG 314
++ A P P P G + + + AP G LPG G G + + +G G +G
Sbjct: 1467 EMAAAPGRPGPPGKDGAPGRPGAP-GSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGI 1525
Query: 315 GEKGER--LGPVG 325
G GE GP G
Sbjct: 1526 GIAGENGLPGPPG 1538
Score = 29.3 bits (64), Expect = 8.5
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 241 TGQEVAGGEPPPAADVTATPPPPAPR-GGEKSQRKSNAPWGQDILPGGSGGHGEPRARAI 299
TG + G P AT PP P GE+ S G+ PG G G P
Sbjct: 1077 TGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPP----- 1131
Query: 300 LNVHAPRGRWGAVG-GGEKGER 320
PRG G G GEKG++
Sbjct: 1132 -GPAGPRGERGPQGNSGEKGDQ 1152
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 36.2 bits (82), Expect = 0.070
Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 16/94 (17%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRK---------SNAPWGQDILPGGSGGHG 292
G E G P D P P+ + GEK + P G PG G +G
Sbjct: 823 GPEGPKGRAGPTGD-----PGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 877
Query: 293 EPRARAILNVHAPRGRWGAVG-GGEKGERLGPVG 325
E AR + PRG+ G G G +G R GP G
Sbjct: 878 EKGARGVAGKPGPRGQRGPTGPRGSRGAR-GPTG 910
Score = 35.8 bits (81), Expect = 0.091
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 246 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 305
AG E PP P PA + G + R P G+ LPG +G G P P
Sbjct: 1395 AGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP------GPMGP 1448
Query: 306 RGRWGAVGG-GEKGERLGP 323
G G G G KGE+ P
Sbjct: 1449 PGLPGLKGDPGSKGEKGHP 1467
Score = 34.7 bits (78), Expect = 0.20
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 301
G E A G P P + P P GEK + P G PG G G
Sbjct: 1195 GDEGARGFPGPPGPIGLQGLPGPP--GEKGENGDVGPMGP---PGPPGPRGPQGPNGADG 1249
Query: 302 VHAPRGRWGAVGG-GEKGE 319
P G G+VGG GEKGE
Sbjct: 1250 PQGPPGSVGSVGGVGEKGE 1268
Score = 33.1 bits (74), Expect = 0.59
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 16/100 (16%)
Query: 242 GQEVAGGEP-PPAADVTATPP-PPAPRG--------------GEKSQRKSNAPWGQDILP 285
G++ G+P PP A PP PP RG G K + + P G+
Sbjct: 1348 GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV 1407
Query: 286 GGSGGHGEPRARAILNVHAPRGRWGAVGGGEKGERLGPVG 325
G G G+P + + P G G G + GP+G
Sbjct: 1408 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMG 1447
Score = 32.7 bits (73), Expect = 0.77
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 260 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG--GEK 317
P PP PRG + ++ P G G GG GE P G G VGG GE+
Sbjct: 1233 PGPPGPRGPQ-GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAG-VGGPKGER 1290
Query: 318 GER--LGPVGAS 327
GE+ GP GA+
Sbjct: 1291 GEKGEAGPPGAA 1302
Score = 32.3 bits (72), Expect = 1.0
Identities = 30/91 (32%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 240 ATGQE-VAGGEPPPAADVTATP---PPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPR 295
A GQ +AG + PP P P P + G + P G PG G G+P
Sbjct: 674 APGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPG 733
Query: 296 ARAILNVHAPRGRWGAVG-GGEKGERLGPVG 325
+ P G G G GEKG LGP G
Sbjct: 734 LAGLPGADGPPGHPGKEGQSGEKG-ALGPPG 763
Score = 32.3 bits (72), Expect = 1.0
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 237 QEQATGQEVAGGEPPPAADVTATPPPPAPRG-----GEKSQRKSNAPWGQDILPGGSGGH 291
+E +G++ A G P P + P PRG G + + S G+D PG G
Sbjct: 749 KEGQSGEKGALGPPGPQGPIGY----PGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDM 804
Query: 292 GEPRARAILNVHAPRGRWGAVGGGEKGERLGPVG 325
G R + PRG G G KG R GP G
Sbjct: 805 GLKGDRGEVGQIGPRGEDGP--EGPKG-RAGPTG 835
Score = 32.3 bits (72), Expect = 1.0
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 246 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 305
+GG+ PP P P G + P G+D LPG G GE P
Sbjct: 918 SGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE---TGFQGKTGP 974
Query: 306 RGRWGAVGGGEKGERLGPVG 325
G G VG GP+G
Sbjct: 975 PGPGGVVGPQGPTGETGPIG 994
Score = 30.0 bits (66), Expect = 5.0
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 21/79 (26%)
Query: 247 GGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPR 306
GGE P PP P GE+ + P G LPG G G P P
Sbjct: 1057 GGEGPQG------PPGPVGSPGERGSAGTAGPIG---LPGRPGPQGPP---------GPA 1098
Query: 307 GRWGAVGGGEKGERLGPVG 325
G GA GEKG + GP G
Sbjct: 1099 GEKGA--PGEKGPQ-GPAG 1114
Score = 30.0 bits (66), Expect = 5.0
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 247 GGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPR 306
G + PP D P P G+ P GQD + G G G+P P
Sbjct: 1306 GAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDP------GQPGPP 1359
Query: 307 GRWGAVG-GGEKGERLGPVGAS 327
G G G G G+R GP GA+
Sbjct: 1360 GPSGEAGPPGPPGKR-GPPGAA 1380
Score = 29.6 bits (65), Expect = 6.5
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 253 AADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWG 310
A V P P RG G + R + P G+ G SGG G P P+G G
Sbjct: 881 ARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP---GERGPQGPQG 937
Query: 311 AVG-GGEKGERLGPVG 325
VG G KG GP G
Sbjct: 938 PVGFPGPKGPP-GPPG 952
Score = 29.3 bits (64), Expect = 8.5
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 24/82 (29%)
Query: 268 GEKSQRKSNAPWGQDIL------PGGSGGHGEPRARAILNVHAPRGRWGAVG-------- 313
G K + N P G L PG +GG GEP R + +G GA G
Sbjct: 1150 GSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPI 1209
Query: 314 --------GGEKGER--LGPVG 325
GEKGE +GP+G
Sbjct: 1210 GLQGLPGPPGEKGENGDVGPMG 1231
Score = 29.3 bits (64), Expect = 8.5
Identities = 31/98 (31%), Positives = 35/98 (35%), Gaps = 20/98 (20%)
Query: 248 GEPPPAADVTATPPPPAPRGGEKSQRKSNA---------PWGQDILPGGSGGHGEPRARA 298
GEP A + PP A GG K +R P G PG G G P
Sbjct: 1267 GEPGEAGN--PGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVG 1324
Query: 299 ILNVHAPRGRWGAVG----GGEKGE-----RLGPVGAS 327
P G G G GG+KGE + GP G S
Sbjct: 1325 FPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPS 1362
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 36.2 bits (82), Expect = 0.070
Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 16/94 (17%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRK---------SNAPWGQDILPGGSGGHG 292
G E G P D P P+ + GEK + P G PG G +G
Sbjct: 772 GPEGPKGRAGPTGD-----PGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 826
Query: 293 EPRARAILNVHAPRGRWGAVG-GGEKGERLGPVG 325
E AR + PRG+ G G G +G R GP G
Sbjct: 827 EKGARGVAGKPGPRGQRGPTGPRGSRGAR-GPTG 859
Score = 35.8 bits (81), Expect = 0.091
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 246 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 305
AG E PP P PA + G + R P G+ LPG +G G P P
Sbjct: 1344 AGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP------GPMGP 1397
Query: 306 RGRWGAVGG-GEKGERLGP 323
G G G G KGE+ P
Sbjct: 1398 PGLPGLKGDPGSKGEKGHP 1416
Score = 34.7 bits (78), Expect = 0.20
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 301
G E A G P P + P P GEK + P G PG G G
Sbjct: 1144 GDEGARGFPGPPGPIGLQGLPGPP--GEKGENGDVGPMGP---PGPPGPRGPQGPNGADG 1198
Query: 302 VHAPRGRWGAVGG-GEKGE 319
P G G+VGG GEKGE
Sbjct: 1199 PQGPPGSVGSVGGVGEKGE 1217
Score = 33.1 bits (74), Expect = 0.59
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 16/100 (16%)
Query: 242 GQEVAGGEP-PPAADVTATPP-PPAPRG--------------GEKSQRKSNAPWGQDILP 285
G++ G+P PP A PP PP RG G K + + P G+
Sbjct: 1297 GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV 1356
Query: 286 GGSGGHGEPRARAILNVHAPRGRWGAVGGGEKGERLGPVG 325
G G G+P + + P G G G + GP+G
Sbjct: 1357 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMG 1396
Score = 32.7 bits (73), Expect = 0.77
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 260 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG--GEK 317
P PP PRG + ++ P G G GG GE P G G VGG GE+
Sbjct: 1182 PGPPGPRGPQ-GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAG-VGGPKGER 1239
Query: 318 GER--LGPVGAS 327
GE+ GP GA+
Sbjct: 1240 GEKGEAGPPGAA 1251
Score = 32.3 bits (72), Expect = 1.0
Identities = 30/91 (32%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 240 ATGQE-VAGGEPPPAADVTATP---PPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPR 295
A GQ +AG + PP P P P + G + P G PG G G+P
Sbjct: 623 APGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPG 682
Query: 296 ARAILNVHAPRGRWGAVG-GGEKGERLGPVG 325
+ P G G G GEKG LGP G
Sbjct: 683 LAGLPGADGPPGHPGKEGQSGEKG-ALGPPG 712
Score = 32.3 bits (72), Expect = 1.0
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 237 QEQATGQEVAGGEPPPAADVTATPPPPAPRG-----GEKSQRKSNAPWGQDILPGGSGGH 291
+E +G++ A G P P + P PRG G + + S G+D PG G
Sbjct: 698 KEGQSGEKGALGPPGPQGPIGY----PGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDM 753
Query: 292 GEPRARAILNVHAPRGRWGAVGGGEKGERLGPVG 325
G R + PRG G G KG R GP G
Sbjct: 754 GLKGDRGEVGQIGPRGEDGP--EGPKG-RAGPTG 784
Score = 32.3 bits (72), Expect = 1.0
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 246 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 305
+GG+ PP P P G + P G+D LPG G GE P
Sbjct: 867 SGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE---TGFQGKTGP 923
Query: 306 RGRWGAVGGGEKGERLGPVG 325
G G VG GP+G
Sbjct: 924 PGPGGVVGPQGPTGETGPIG 943
Score = 30.0 bits (66), Expect = 5.0
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 21/79 (26%)
Query: 247 GGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPR 306
GGE P PP P GE+ + P G LPG G G P P
Sbjct: 1006 GGEGPQG------PPGPVGSPGERGSAGTAGPIG---LPGRPGPQGPP---------GPA 1047
Query: 307 GRWGAVGGGEKGERLGPVG 325
G GA GEKG + GP G
Sbjct: 1048 GEKGA--PGEKGPQ-GPAG 1063
Score = 30.0 bits (66), Expect = 5.0
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 247 GGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPR 306
G + PP D P P G+ P GQD + G G G+P P
Sbjct: 1255 GAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDP------GQPGPP 1308
Query: 307 GRWGAVG-GGEKGERLGPVGAS 327
G G G G G+R GP GA+
Sbjct: 1309 GPSGEAGPPGPPGKR-GPPGAA 1329
Score = 29.6 bits (65), Expect = 6.5
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 253 AADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWG 310
A V P P RG G + R + P G+ G SGG G P P+G G
Sbjct: 830 ARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP---GERGPQGPQG 886
Query: 311 AVG-GGEKGERLGPVG 325
VG G KG GP G
Sbjct: 887 PVGFPGPKGPP-GPPG 901
Score = 29.3 bits (64), Expect = 8.5
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 24/82 (29%)
Query: 268 GEKSQRKSNAPWGQDIL------PGGSGGHGEPRARAILNVHAPRGRWGAVG-------- 313
G K + N P G L PG +GG GEP R + +G GA G
Sbjct: 1099 GSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPI 1158
Query: 314 --------GGEKGER--LGPVG 325
GEKGE +GP+G
Sbjct: 1159 GLQGLPGPPGEKGENGDVGPMG 1180
Score = 29.3 bits (64), Expect = 8.5
Identities = 31/98 (31%), Positives = 35/98 (35%), Gaps = 20/98 (20%)
Query: 248 GEPPPAADVTATPPPPAPRGGEKSQRKSNA---------PWGQDILPGGSGGHGEPRARA 298
GEP A + PP A GG K +R P G PG G G P
Sbjct: 1216 GEPGEAGN--PGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVG 1273
Query: 299 ILNVHAPRGRWGAVG----GGEKGE-----RLGPVGAS 327
P G G G GG+KGE + GP G S
Sbjct: 1274 FPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPS 1311
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 36.2 bits (82), Expect = 0.070
Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 16/94 (17%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRK---------SNAPWGQDILPGGSGGHG 292
G E G P D P P+ + GEK + P G PG G +G
Sbjct: 811 GPEGPKGRAGPTGD-----PGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 865
Query: 293 EPRARAILNVHAPRGRWGAVG-GGEKGERLGPVG 325
E AR + PRG+ G G G +G R GP G
Sbjct: 866 EKGARGVAGKPGPRGQRGPTGPRGSRGAR-GPTG 898
Score = 35.8 bits (81), Expect = 0.091
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 246 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 305
AG E PP P PA + G + R P G+ LPG +G G P P
Sbjct: 1383 AGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP------GPMGP 1436
Query: 306 RGRWGAVGG-GEKGERLGP 323
G G G G KGE+ P
Sbjct: 1437 PGLPGLKGDPGSKGEKGHP 1455
Score = 34.7 bits (78), Expect = 0.20
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 301
G E A G P P + P P GEK + P G PG G G
Sbjct: 1183 GDEGARGFPGPPGPIGLQGLPGPP--GEKGENGDVGPMGP---PGPPGPRGPQGPNGADG 1237
Query: 302 VHAPRGRWGAVGG-GEKGE 319
P G G+VGG GEKGE
Sbjct: 1238 PQGPPGSVGSVGGVGEKGE 1256
Score = 33.1 bits (74), Expect = 0.59
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 16/100 (16%)
Query: 242 GQEVAGGEP-PPAADVTATPP-PPAPRG--------------GEKSQRKSNAPWGQDILP 285
G++ G+P PP A PP PP RG G K + + P G+
Sbjct: 1336 GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV 1395
Query: 286 GGSGGHGEPRARAILNVHAPRGRWGAVGGGEKGERLGPVG 325
G G G+P + + P G G G + GP+G
Sbjct: 1396 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMG 1435
Score = 32.7 bits (73), Expect = 0.77
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 260 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG--GEK 317
P PP PRG + ++ P G G GG GE P G G VGG GE+
Sbjct: 1221 PGPPGPRGPQ-GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAG-VGGPKGER 1278
Query: 318 GER--LGPVGAS 327
GE+ GP GA+
Sbjct: 1279 GEKGEAGPPGAA 1290
Score = 32.3 bits (72), Expect = 1.0
Identities = 30/91 (32%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 240 ATGQE-VAGGEPPPAADVTATP---PPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPR 295
A GQ +AG + PP P P P + G + P G PG G G+P
Sbjct: 662 APGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPG 721
Query: 296 ARAILNVHAPRGRWGAVG-GGEKGERLGPVG 325
+ P G G G GEKG LGP G
Sbjct: 722 LAGLPGADGPPGHPGKEGQSGEKG-ALGPPG 751
Score = 32.3 bits (72), Expect = 1.0
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 237 QEQATGQEVAGGEPPPAADVTATPPPPAPRG-----GEKSQRKSNAPWGQDILPGGSGGH 291
+E +G++ A G P P + P PRG G + + S G+D PG G
Sbjct: 737 KEGQSGEKGALGPPGPQGPIGY----PGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDM 792
Query: 292 GEPRARAILNVHAPRGRWGAVGGGEKGERLGPVG 325
G R + PRG G G KG R GP G
Sbjct: 793 GLKGDRGEVGQIGPRGEDGP--EGPKG-RAGPTG 823
Score = 32.3 bits (72), Expect = 1.0
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 246 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 305
+GG+ PP P P G + P G+D LPG G GE P
Sbjct: 906 SGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE---TGFQGKTGP 962
Query: 306 RGRWGAVGGGEKGERLGPVG 325
G G VG GP+G
Sbjct: 963 PGPGGVVGPQGPTGETGPIG 982
Score = 30.0 bits (66), Expect = 5.0
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 21/79 (26%)
Query: 247 GGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPR 306
GGE P PP P GE+ + P G LPG G G P P
Sbjct: 1045 GGEGPQG------PPGPVGSPGERGSAGTAGPIG---LPGRPGPQGPP---------GPA 1086
Query: 307 GRWGAVGGGEKGERLGPVG 325
G GA GEKG + GP G
Sbjct: 1087 GEKGA--PGEKGPQ-GPAG 1102
Score = 30.0 bits (66), Expect = 5.0
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 247 GGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPR 306
G + PP D P P G+ P GQD + G G G+P P
Sbjct: 1294 GAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDP------GQPGPP 1347
Query: 307 GRWGAVG-GGEKGERLGPVGAS 327
G G G G G+R GP GA+
Sbjct: 1348 GPSGEAGPPGPPGKR-GPPGAA 1368
Score = 29.6 bits (65), Expect = 6.5
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 253 AADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWG 310
A V P P RG G + R + P G+ G SGG G P P+G G
Sbjct: 869 ARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP---GERGPQGPQG 925
Query: 311 AVG-GGEKGERLGPVG 325
VG G KG GP G
Sbjct: 926 PVGFPGPKGPP-GPPG 940
Score = 29.3 bits (64), Expect = 8.5
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 24/82 (29%)
Query: 268 GEKSQRKSNAPWGQDIL------PGGSGGHGEPRARAILNVHAPRGRWGAVG-------- 313
G K + N P G L PG +GG GEP R + +G GA G
Sbjct: 1138 GSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPI 1197
Query: 314 --------GGEKGER--LGPVG 325
GEKGE +GP+G
Sbjct: 1198 GLQGLPGPPGEKGENGDVGPMG 1219
Score = 29.3 bits (64), Expect = 8.5
Identities = 31/98 (31%), Positives = 35/98 (35%), Gaps = 20/98 (20%)
Query: 248 GEPPPAADVTATPPPPAPRGGEKSQRKSNA---------PWGQDILPGGSGGHGEPRARA 298
GEP A + PP A GG K +R P G PG G G P
Sbjct: 1255 GEPGEAGN--PGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVG 1312
Query: 299 ILNVHAPRGRWGAVG----GGEKGE-----RLGPVGAS 327
P G G G GG+KGE + GP G S
Sbjct: 1313 FPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPS 1350
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 36.2 bits (82), Expect = 0.070
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 236 LQEQATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDIL--PGGSGGHGE 293
LQ A GG P +A PPPP P G R+S+ P D G GG
Sbjct: 31 LQRPARRSGRGGGGAAPGPYPSAAPPPPGP--GPPPSRQSSPPSASDCFGSNGNGGGAFR 88
Query: 294 PRARAILNVHAP 305
P +R +L + P
Sbjct: 89 PGSRRLLGLGGP 100
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 36.2 bits (82), Expect = 0.070
Identities = 31/94 (32%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 235 LLQEQATGQEVAGGEPPPAADVTATPPPPAPRG--------GEKSQRKSNAPWGQDILPG 286
L+ EQ G G P P D+ +P P RG G P GQ G
Sbjct: 556 LMMEQENGN--LRGSPGPKGDM-GSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVG 612
Query: 287 GSGGHGEPRARAILNVHAPRGRWGAVGGGEKGER 320
G G R PRG G G GEKGER
Sbjct: 613 DPGMEGPMGQRGREGPMGPRGEAGPPGSGEKGER 646
Score = 30.0 bits (66), Expect = 5.0
Identities = 33/107 (30%), Positives = 38/107 (35%), Gaps = 27/107 (25%)
Query: 242 GQEVAGGEP----PPAADVTATPP----------PPAPRG--------GEKSQRKSNAPW 279
G+ A GEP PP + P PP P G G + P
Sbjct: 644 GERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPM 703
Query: 280 GQDILPGGSGGHGEPRARAILNVHAPRGRWGAVG-GGEKGERLGPVG 325
G PG G GE R + RG GAVG G KG +GP G
Sbjct: 704 GP---PGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKG-AMGPAG 746
Score = 30.0 bits (66), Expect = 5.0
Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 262 PPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVG----GG 315
PP P+G GEK R G LPG GEP A+ + P G G G G
Sbjct: 705 PPGPKGDQGEKGPRGLTGEPGMRGLPGAV---GEPGAKGAMGPAGPDGHQGPRGEQGLTG 761
Query: 316 EKGERLGPVGAS 327
G R GP G S
Sbjct: 762 MPGIR-GPPGPS 772
Score = 29.6 bits (65), Expect = 6.5
Identities = 32/102 (31%), Positives = 35/102 (34%), Gaps = 24/102 (23%)
Query: 248 GEPPPAAD--VTATPPPPAPRG-----GEKSQRKS------NAPWGQ-----------DI 283
G P P D TP P P G G K Q+ S P GQ +
Sbjct: 576 GSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEA 635
Query: 284 LPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKGERLGPVG 325
P GSG GE A H P G G+VG GP G
Sbjct: 636 GPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQG 677
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 36.2 bits (82), Expect = 0.070
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 17/95 (17%)
Query: 390 PQLSRCQPASPHPHHGFCSDSASLPFPPPPSAISHPFLPTTPRSLPADSLSSLSGPLPFA 449
P L P+SP P C ++ PPPP LPT P P+ S S P P +
Sbjct: 762 PLLIPTDPSSPPP----CPPVLTVATPPPP------LLPTVPLPAPSSSASPHPCPSPLS 811
Query: 450 SDCILFVAVDPTAALSSLLSSHSPVAIPIPCLSPL 484
+ A P LS + SP PIP + PL
Sbjct: 812 N----ATAQSPLPILSPTV---SPSPSPIPPVEPL 839
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 36.2 bits (82), Expect = 0.070
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 17/95 (17%)
Query: 390 PQLSRCQPASPHPHHGFCSDSASLPFPPPPSAISHPFLPTTPRSLPADSLSSLSGPLPFA 449
P L P+SP P C ++ PPPP LPT P P+ S S P P +
Sbjct: 963 PLLIPTDPSSPPP----CPPVLTVATPPPP------LLPTVPLPAPSSSASPHPCPSPLS 1012
Query: 450 SDCILFVAVDPTAALSSLLSSHSPVAIPIPCLSPL 484
+ A P LS + SP PIP + PL
Sbjct: 1013 N----ATAQSPLPILSPTV---SPSPSPIPPVEPL 1040
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 36.2 bits (82), Expect = 0.070
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 17/95 (17%)
Query: 390 PQLSRCQPASPHPHHGFCSDSASLPFPPPPSAISHPFLPTTPRSLPADSLSSLSGPLPFA 449
P L P+SP P C ++ PPPP LPT P P+ S S P P +
Sbjct: 963 PLLIPTDPSSPPP----CPPVLTVATPPPP------LLPTVPLPAPSSSASPHPCPSPLS 1012
Query: 450 SDCILFVAVDPTAALSSLLSSHSPVAIPIPCLSPL 484
+ A P LS + SP PIP + PL
Sbjct: 1013 N----ATAQSPLPILSPTV---SPSPSPIPPVEPL 1040
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 35.8 bits (81), Expect = 0.091
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 260 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKGE 319
P PP P G E + P G+D +PG G G P R + + G G+ G G GE
Sbjct: 830 PGPPGPIGPEGPRGLPGLP-GRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGFGYPGE 888
Query: 320 RLGPVG 325
+ GP G
Sbjct: 889 Q-GPPG 893
Score = 29.3 bits (64), Expect = 8.5
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 262 PPAPRG-----GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG-G 315
PP +G G SN GQ PG G GEP + + +G GA G G
Sbjct: 624 PPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGATGSPG 683
Query: 316 EKG 318
E G
Sbjct: 684 EPG 686
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 35.8 bits (81), Expect = 0.091
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 247 GGEPPPAADVTATPPPPAPRG--------GEKSQRKSNAPWGQDILPGGSGGHGEPRARA 298
G + PP D PP +G GEK ++ G G +G G P A
Sbjct: 512 GPQGPPGKD-----GPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEG 566
Query: 299 ILNVHAPRGRWGAVGG-------GEKGERLGPVG 325
+ V P+G G G GEKG+R GP+G
Sbjct: 567 LQGVPGPKGEAGLDGAKGEKGFQGEKGDR-GPLG 599
Score = 30.4 bits (67), Expect = 3.8
Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 301
G + GG P P PP P+G GQ PG G GE A
Sbjct: 377 GNSIGGGRGEPGPP--GLPGPPGPKGEAGVD-------GQVGPPGQPGDKGERGAAGEQG 427
Query: 302 VHAPRGRWGAVGGGEKGERLGPVGASQQ 329
P+G G G GE + G + + Q
Sbjct: 428 PDGPKGSKGEPGKGEMVDYNGNINEALQ 455
Score = 29.3 bits (64), Expect = 8.5
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 254 ADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGA 311
A + P PP P G G P G LPG G G+P I H +G G
Sbjct: 266 ASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDP---GIQGYHGRKGERGM 322
Query: 312 VG-GGEKGERLGP 323
G G+ G + P
Sbjct: 323 PGMPGKHGAKGAP 335
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 35.8 bits (81), Expect = 0.091
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 247 GGEPPPAADVTATPPPPAPRG--------GEKSQRKSNAPWGQDILPGGSGGHGEPRARA 298
G + PP D PP +G GEK ++ G G +G G P A
Sbjct: 512 GPQGPPGKD-----GPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEG 566
Query: 299 ILNVHAPRGRWGAVGG-------GEKGERLGPVG 325
+ V P+G G G GEKG+R GP+G
Sbjct: 567 LQGVPGPKGEAGLDGAKGEKGFQGEKGDR-GPLG 599
Score = 30.4 bits (67), Expect = 3.8
Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 242 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 301
G + GG P P PP P+G GQ PG G GE A
Sbjct: 377 GNSIGGGRGEPGPP--GLPGPPGPKGEAGVD-------GQVGPPGQPGDKGERGAAGEQG 427
Query: 302 VHAPRGRWGAVGGGEKGERLGPVGASQQ 329
P+G G G GE + G + + Q
Sbjct: 428 PDGPKGSKGEPGKGEMVDYNGNINEALQ 455
Score = 29.6 bits (65), Expect = 6.5
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 250 PPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRG 307
PP P P P+G G K P G LPG G G+ R RG
Sbjct: 612 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR------GERG 665
Query: 308 RWGAVG-GGEKGERLGP 323
+ G+ G G+KG++ P
Sbjct: 666 KKGSRGPKGDKGDQGAP 682
Score = 29.3 bits (64), Expect = 8.5
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 254 ADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGA 311
A + P PP P G G P G LPG G G+P I H +G G
Sbjct: 266 ASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDP---GIQGYHGRKGERGM 322
Query: 312 VG-GGEKGERLGP 323
G G+ G + P
Sbjct: 323 PGMPGKHGAKGAP 335
>gi|116256481 TNFAIP3 interacting protein 1 [Homo sapiens]
Length = 636
Score = 35.4 bits (80), Expect = 0.12
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 402 PHHGFCSDSASLPFPPPPSAISHPFLPTTPRS 433
PHHGF D + + +PPPP A+ HP P P S
Sbjct: 560 PHHGF-EDWSQIRYPPPPMAMEHP--PPLPNS 588
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 35.4 bits (80), Expect = 0.12
Identities = 36/113 (31%), Positives = 47/113 (41%), Gaps = 24/113 (21%)
Query: 218 AGTSARSLR-------VQITRLAWLLQEQATGQE--VAGGEPPPAADVTATPPPPAPRGG 268
AG++AR+LR Q R A + Q G E + G PP ++ PPP + R
Sbjct: 102 AGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLL 161
Query: 269 EKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRW-GAVGGGEKGER 320
+ R P G G G + A+L W GA GGGEKG R
Sbjct: 162 PPTPRPFPPA------PAGGKGEGGGKESAVL--------WKGAEGGGEKGNR 200
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,795,679
Number of Sequences: 37866
Number of extensions: 1340261
Number of successful extensions: 11679
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 275
Number of HSP's that attempted gapping in prelim test: 9693
Number of HSP's gapped (non-prelim): 2060
length of query: 491
length of database: 18,247,518
effective HSP length: 106
effective length of query: 385
effective length of database: 14,233,722
effective search space: 5479982970
effective search space used: 5479982970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.