Guide to the Human Genome
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Name: LOC642622 Sequence: fasta or formatted (190aa) NCBI GI: 169201475
Description:

PREDICTED: similar to hCG1798126, partial

Not currently referenced in the text

Other entries for this name:
alt prot {269aa} PREDICTED: similar to hCG1798126
alt prot {269aa} PREDICTED: similar to hCG1798126
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         12           1
 C cysteine           11.1         21           1
 D aspartate           0.5          1           1
 E glutamate           1.1          2           1
 F phenylalanine       7.4         14           1
 G glycine             1.6          3           1
 H histidine           4.7          9           1
 I isoleucine          0.0          0           0
 K lysine              0.5          1           1
 L leucine            13.2         25           2
 M methionine          0.0          0           0
 N asparagine          0.0          0           0
 P proline            20.5         39           1
 Q glutamine           0.5          1           1
 R arginine            4.7          9           1
 S serine              8.9         17           1
 T threonine          10.5         20           1
 V valine              4.2          8           1
 W tryptophan          0.5          1           1
 Y tyrosine            3.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1798126, partial 
LOC642622             1.000   PREDICTED: similar to hCG1798126 
LOC642622             1.000   PREDICTED: similar to hCG1798126 
MUC4                  0.103   mucin 4 isoform a 
KRTAP10-3             0.068   keratin associated protein 10-3 
PTPN23                0.061   protein tyrosine phosphatase, non-receptor type 23 [...
KRTAP4-8              0.061   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.061   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.061   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.061   keratin associated protein 4.8 
KRTAP4-8              0.061   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.061   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-9              0.059   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP10-1             0.059   keratin associated protein 10-1 
KRTAP10-2             0.059   keratin associated protein 10-2 
LOC100131696          0.059   PREDICTED: keratin associated protein 
LOC100288060          0.059   PREDICTED: hypothetical protein XP_002343557 
KRTAP4-8              0.056   PREDICTED: keratin associated protein 4-8 
KRTAP4-11             0.056   keratin associated protein 4-11 
KRTAP4-8              0.056   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.056   PREDICTED: similar to keratin associated protein 4-...
KRTAP10-12            0.054   keratin associated protein 10-12 
KRTAP4-9              0.051   keratin associated protein 4-9 
KRTAP4-9              0.051   PREDICTED: keratin associated protein 4-9 isoform 1...
LOC284297             0.049   hypothetical protein LOC284297 
LOC100131696          0.049   PREDICTED: keratin associated protein 
KRTAP24-1             0.049   keratin associated protein 24-1 
LOC100130599          0.046   PREDICTED: similar to Keratin-associated protein 10...
KRTAP10-8             0.046   keratin associated protein 10-8 
KRTAP4-5              0.044   keratin associated protein 4-5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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