Guide to the Human Genome
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Name: CBLL1 Sequence: fasta or formatted (491aa) NCBI GI: 209180481
Description:

Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1

Referenced in:

Cadherins and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         26           2
 C cysteine            2.2         11           1
 D aspartate           4.1         20           2
 E glutamate           4.1         20           3
 F phenylalanine       2.4         12           1
 G glycine             6.3         31           2
 H histidine           7.1         35           3
 I isoleucine          5.7         28           2
 K lysine              3.7         18           2
 L leucine             4.3         21           1
 M methionine          3.5         17           2
 N asparagine          3.1         15           1
 P proline            21.2        104           8
 Q glutamine           6.1         30           2
 R arginine            5.5         27           3
 S serine              5.1         25           2
 T threonine           4.3         21           1
 V valine              2.9         14           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.9         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Cas-Br-M (murine) ecotropic retroviral transforming... 
ZNF645                0.399   zinc finger protein 645 
WIPF1                 0.064   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.064   WAS/WASL interacting protein family, member 1 
FLJ22184              0.062   PREDICTED: hypothetical protein FLJ22184 
PRB3                  0.061   proline-rich protein BstNI subfamily 3 precursor [H...
SFPQ                  0.060   splicing factor proline/glutamine rich (polypyrimidin...
PRB2                  0.059   proline-rich protein BstNI subfamily 2 
SF3B4                 0.058   splicing factor 3b, subunit 4 
WASF2                 0.057   WAS protein family, member 2 
BRD4                  0.056   bromodomain-containing protein 4 isoform long 
SF1                   0.056   splicing factor 1 isoform 1 
CCNK                  0.056   cyclin K isoform 1 
CPSF6                 0.056   cleavage and polyadenylation specific factor 6, 68 ...
FLJ22184              0.055   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.055   PREDICTED: hypothetical protein LOC80164 
RBM33                 0.055   RNA binding motif protein 33 
FMN2                  0.055   formin 2 
PTPN23                0.055   protein tyrosine phosphatase, non-receptor type 23 [...
RERE                  0.055   atrophin-1 like protein isoform b 
RERE                  0.055   atrophin-1 like protein isoform a 
RERE                  0.055   atrophin-1 like protein isoform a 
RAPH1                 0.054   Ras association and pleckstrin homology domains 1 is...
PRB4                  0.054   proline-rich protein BstNI subfamily 4 precursor [Ho...
MUC2                  0.053   mucin 2 precursor 
WAS                   0.052   Wiskott-Aldrich syndrome protein 
WASL                  0.052   Wiskott-Aldrich syndrome gene-like protein 
MLL5                  0.052   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.052   myeloid/lymphoid or mixed-lineage leukemia 5 
ATN1                  0.051   atrophin-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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