Guide to the Human Genome
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Search of human proteins with 239751597

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo
sapiens]
         (194 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757091 PREDICTED: hypothetical protein [Homo sapiens]           404   e-113
gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo ...   404   e-113
gi|239746112 PREDICTED: hypothetical protein XP_002344192 [Homo ...   404   e-113
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      47   1e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    45   3e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    45   3e-05
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           45   5e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    45   5e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    44   7e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    44   7e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    44   7e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     44   7e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      43   1e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       43   2e-04
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s...    42   4e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    42   4e-04
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    42   4e-04
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]            41   6e-04
gi|119508426 alpha 3 type IX collagen [Homo sapiens]                   41   6e-04
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ...    40   0.001
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s...    40   0.001
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    40   0.001
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    40   0.001
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    40   0.001
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     39   0.002
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]      39   0.002
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]         39   0.002
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                39   0.002
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]          39   0.002
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]            39   0.003

>gi|239757091 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 194

 Score =  404 bits (1037), Expect = e-113
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60
           MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG
Sbjct: 1   MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60

Query: 61  AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120
           AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE
Sbjct: 61  AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120

Query: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180
           GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP
Sbjct: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180

Query: 181 FIHTALGRPRRCPL 194
           FIHTALGRPRRCPL
Sbjct: 181 FIHTALGRPRRCPL 194


>gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo
           sapiens]
          Length = 194

 Score =  404 bits (1037), Expect = e-113
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60
           MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG
Sbjct: 1   MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60

Query: 61  AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120
           AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE
Sbjct: 61  AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120

Query: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180
           GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP
Sbjct: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180

Query: 181 FIHTALGRPRRCPL 194
           FIHTALGRPRRCPL
Sbjct: 181 FIHTALGRPRRCPL 194


>gi|239746112 PREDICTED: hypothetical protein XP_002344192 [Homo
           sapiens]
          Length = 194

 Score =  404 bits (1037), Expect = e-113
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60
           MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG
Sbjct: 1   MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60

Query: 61  AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120
           AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE
Sbjct: 61  AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120

Query: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180
           GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP
Sbjct: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180

Query: 181 FIHTALGRPRRCPL 194
           FIHTALGRPRRCPL
Sbjct: 181 FIHTALGRPRRCPL 194


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 27/133 (20%)

Query: 3   GGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----AP 58
           GG   +   P     AGPP   G   E  + GG  +        A  LP PPG      P
Sbjct: 836 GGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAG---FPGARGLPGPPGSNGNPGP 892

Query: 59  PGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118
           PG + S  +      +G           PGPAG +G PG+           G AG  G K
Sbjct: 893 PGPSGSPGK------DGP----------PGPAGNTGAPGSPGVSGP----KGDAGQPGEK 932

Query: 119 TEGLARAPGGAPG 131
               A+ P GAPG
Sbjct: 933 GSPGAQGPPGAPG 945



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 45/136 (33%), Positives = 55/136 (40%), Gaps = 16/136 (11%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASS------LHIKCMEAASLLPRPPGKAPPGAAKST 65
            P S   +GP   AG+P E  + G          L I  +  A  L  PPG   P  +   
Sbjct: 914  PGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGP 973

Query: 66   SRVHCRAAEGG-----GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119
              V   + + G     G R  P    LPG AG +G PG        G L GR G  G K 
Sbjct: 974  QGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG-LPGRDGSPGGKG 1032

Query: 120  E-GLARAPG--GAPGH 132
            + G   +PG  GAPGH
Sbjct: 1033 DRGENGSPGAPGAPGH 1048



 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 4   GVRSLVSTPASWSAAGPPD-----GAGRPAEHEATGGASSLHIKCMEAASL-LPRPPG-K 56
           G   L   P     AGPP      GA  P       G   L     E   L  P P G K
Sbjct: 684 GPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDK 743

Query: 57  APPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
             PG   +         + G   P   +  PGPAG+ G  G   A    G ++G  G  G
Sbjct: 744 GEPGGPGADGV----PGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPG-IAGPRGSPG 798

Query: 117 RKTEGLARAPGGAPGHGLQGGQP 139
            + E     P G PG   Q G+P
Sbjct: 799 ERGETGPPGPAGFPGAPGQNGEP 821



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 41/137 (29%), Positives = 46/137 (33%), Gaps = 11/137 (8%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
            G+  L  T       G P   G P    + GG           A   P  PG  PPG   
Sbjct: 999  GLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPG--PPGPVG 1056

Query: 64   STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
               +   R   G    P      PGPAG  G PG    +   G  +G  G  G K  G  
Sbjct: 1057 PAGKSGDRGESG----PAGPAGAPGPAGSRGAPGPQGPRGDKGE-TGERGAAGIK--GHR 1109

Query: 124  RAPG--GAPGHGLQGGQ 138
              PG  GAPG     GQ
Sbjct: 1110 GFPGNPGAPGSPGPAGQ 1126



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 42/145 (28%), Positives = 50/145 (34%), Gaps = 19/145 (13%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAA 62
            G R L   P S    GPP  +G P +    G A +         +  P  PG   P G A
Sbjct: 876  GARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGN---------TGAPGSPGVSGPKGDA 926

Query: 63   KSTSRVHCRAAEGGGLRPVP--------AVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGG 114
                      A+G    P P        A  L GP G  G  G+   Q   G  SG+ G 
Sbjct: 927  GQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGE-SGKPGA 985

Query: 115  TGRKTEGLARAPGGAPGHGLQGGQP 139
             G   E     P G PG     G+P
Sbjct: 986  NGLSGERGPPGPQGLPGLAGTAGEP 1010



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 38/136 (27%), Positives = 44/136 (32%), Gaps = 1/136 (0%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G +     P    AAG P   G P E    G       K           PGK  P    
Sbjct: 705 GGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPT 764

Query: 64  STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
                   A + G      A  LPG AG  G PG        G  +G  G  G+  E   
Sbjct: 765 GPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGP-AGFPGAPGQNGEPGG 823

Query: 124 RAPGGAPGHGLQGGQP 139
           +   GAPG   +GG P
Sbjct: 824 KGERGAPGEKGEGGPP 839



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 40/128 (31%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
            P    + G P   G   +   TG   +  IK        P  PG   PG A         
Sbjct: 1076 PGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGS--PGPA--------- 1124

Query: 72   AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
              +G    P PA P  GP G SG PG      H G + G  G  G + E   R   G+PG
Sbjct: 1125 GQQGAIGSPGPAGPR-GPVGPSGPPGKDGTSGHPGPI-GPPGPRGNRGE---RGSEGSPG 1179

Query: 132  HGLQGGQP 139
            H  Q G P
Sbjct: 1180 HPGQPGPP 1187



 Score = 36.2 bits (82), Expect = 0.018
 Identities = 39/133 (29%), Positives = 44/133 (33%), Gaps = 11/133 (8%)

Query: 12  PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAAKSTSRVHC 70
           P S  A G    AG P  + A G       +    A   P PPG    PG          
Sbjct: 344 PGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGI 403

Query: 71  RAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPG- 127
             A G  G   P      PGPAG +G PG        G    +     R   G A  PG 
Sbjct: 404 PGAPGLMGARGP------PGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGV 457

Query: 128 -GAPGHGLQGGQP 139
            GA G   + G P
Sbjct: 458 PGAKGEDGKDGSP 470



 Score = 34.3 bits (77), Expect = 0.068
 Identities = 35/136 (25%), Positives = 41/136 (30%), Gaps = 4/136 (2%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G   +   P    A GPP  AG        GGA          A   P P G+       
Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGE---PGKNGAKGEPGPRGERGEAGIP 455

Query: 64  STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
                     + G      A  LPG AG  G PG        G + G  G  G +     
Sbjct: 456 GVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNG-IPGEKGPAGERGAPGP 514

Query: 124 RAPGGAPGHGLQGGQP 139
             P GA G   + G P
Sbjct: 515 AGPRGAAGEPGRDGVP 530



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 16/89 (17%)

Query: 59  PGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS--------G 110
           PGAA +      R ++G   +P P    PGP G +G PG+  A+   G           G
Sbjct: 314 PGAAGARGNDGARGSDG---QPGP----PGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPG 366

Query: 111 RAGGTGRKTEGLARAPGGAPG-HGLQGGQ 138
           + G  G +    A+ P G PG +G  GG+
Sbjct: 367 QRGEPGPQGHAGAQGPPGPPGINGSPGGK 395



 Score = 32.3 bits (72), Expect = 0.26
 Identities = 41/134 (30%), Positives = 48/134 (35%), Gaps = 15/134 (11%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR----PPGKAP-PGAAKSTSRVHCRAA 73
           GPP  AG+P + +  GGA  L        S   R    PPG A  PGA         +  
Sbjct: 768 GPPGPAGQPGD-KGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGE 826

Query: 74  EGG------GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPG 127
            G       G  P  A P PG +G +G PG    +   G   G          GL   PG
Sbjct: 827 RGAPGEKGEGGPPGVAGP-PGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPG 885

Query: 128 --GAPGHGLQGGQP 139
             G PG     G P
Sbjct: 886 SNGNPGPPGPSGSP 899



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 42/136 (30%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 11  TPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPP-GAAKSTSRVH 69
           +P    A G P  AG        G A    I   +  +     PG A P GAA    R  
Sbjct: 469 SPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDG 528

Query: 70  CRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARAPG- 127
                G G+R +P  P  G  G  G PG   +Q   G   G  G +G R   G+   PG 
Sbjct: 529 VPG--GPGMRGMPGSP--GGPGSDGKPGPPGSQGESGR-PGPPGPSGPRGQPGVMGFPGP 583

Query: 128 ----GAPGHGLQGGQP 139
               GAPG   + G P
Sbjct: 584 KGNDGAPGKNGERGGP 599



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 53  PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRA 112
           PPG   PG  K  +          GL+ +P     GP G +G PG    +   G   G  
Sbjct: 619 PPGPTGPGGDKGDTG----PPGPQGLQGLPGTG--GPPGENGKPGEPGPKGDAG-APGAP 671

Query: 113 GGTG-------RKTEGLARAP---GGAPGHGLQGGQ 138
           GG G       R   GLA AP   GGA   G +GG+
Sbjct: 672 GGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGK 707



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 36/121 (29%), Positives = 41/121 (33%), Gaps = 15/121 (12%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEG--G 76
           GPP   G+P E    G A +              P GK   GA           A G  G
Sbjct: 648 GPPGENGKPGEPGPKGDAGAPGA-----------PGGKGDAGAPGERGPPGLAGAPGLRG 696

Query: 77  GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TEGLARAPGGAPGHGLQ 135
           G  P       G AG  G PGA       G + G  GG G    +G    PGG    G+ 
Sbjct: 697 GAGPPGPEGGKGAAGPPGPPGAAGTPGLQG-MPGERGGLGSPGPKGDKGEPGGPGADGVP 755

Query: 136 G 136
           G
Sbjct: 756 G 756



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 31/115 (26%), Positives = 38/115 (33%), Gaps = 3/115 (2%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG--KAPPGAAKSTSRVHCRAAEGG 76
           GP    G P      G      I     +   P PPG  ++ P   ++ S  +       
Sbjct: 103 GPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKS 162

Query: 77  GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
           G+        PGPAG  G PG      H G   G  G  G   E     P G PG
Sbjct: 163 GVAVGGLAGYPGPAGPPGPPGPPGTSGHPGS-PGSPGYQGPPGEPGQAGPSGPPG 216



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 40/143 (27%), Positives = 45/143 (31%), Gaps = 25/143 (17%)

Query: 12  PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPG-----AAKST 65
           P    A GP   AG+  E    G               LP PPG K P G       K  
Sbjct: 215 PGPPGAIGPSGPAGKDGESGRPGRPGERG---------LPGPPGIKGPAGIPGFPGMKGH 265

Query: 66  SRVHCRAAEGG-----GLRPVPAVP----LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
                R  E G     GL+    +P     PGP G  G PG        G    R     
Sbjct: 266 RGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGA 325

Query: 117 RKTEGLARAPGGAPGHGLQGGQP 139
           R ++G    P G PG     G P
Sbjct: 326 RGSDG-QPGPPGPPGTAGFPGSP 347



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 32/120 (26%), Positives = 39/120 (32%), Gaps = 32/120 (26%)

Query: 18  AGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGG 77
           AGPP   G P      G   S              P  + PPG          +A   G 
Sbjct: 176 AGPPGPPGPPGTSGHPGSPGS--------------PGYQGPPGEPG-------QAGPSGP 214

Query: 78  LRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGH-GLQG 136
             P  A+   GPAG+ G  G            GR G  G       + P G PG  G++G
Sbjct: 215 PGPPGAIGPSGPAGKDGESGR----------PGRPGERGLPGPPGIKGPAGIPGFPGMKG 264



 Score = 27.7 bits (60), Expect = 6.4
 Identities = 28/109 (25%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 2    HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61
            H G       P S   AG     G P      G          +  S  P P G  PPG 
Sbjct: 1108 HRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIG--PPGP 1165

Query: 62   AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSG 110
              +        + G   +P P  P   P    GG GA +    GG  +G
Sbjct: 1166 RGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAG 1214


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 44/147 (29%), Positives = 52/147 (35%), Gaps = 21/147 (14%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA------ 57
           GV+    +P    + GP    G P E   TG A +   +  +       PPG        
Sbjct: 306 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 365

Query: 58  ----PPGAAKSTSRVHCRAAEGG-GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGR 111
                PGA         R  EG  G R  P  P  PGPAG SG PG          + G 
Sbjct: 366 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT-------DGIPGA 418

Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGGQ 138
            G  G    G+A APG     G  G Q
Sbjct: 419 KGSAG--APGIAGAPGFPGPRGPPGPQ 443



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 45/134 (33%), Positives = 47/134 (35%), Gaps = 11/134 (8%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G+R L        AAGPP  AG PA      GA             LP PPG    G   
Sbjct: 627 GLRGLPGKDGETGAAGPPGPAG-PAGERGEQGAPG-----PSGFQGLPGPPGPPGEGGKP 680

Query: 64  STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TEGL 122
               V   A   G + P      P   G  G PGA   Q   G L G  G  G K   G 
Sbjct: 681 GDQGVPGEAGAPGLVGPRGERGFP---GERGSPGAQGLQGPRG-LPGTPGTDGPKGASGP 736

Query: 123 ARAPGGAPGHGLQG 136
           A  PG     GLQG
Sbjct: 737 AGPPGAQGPPGLQG 750



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 44/136 (32%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP--PGA 61
           G R     P     AGPP   G+P      G A        +A +  P+ P  AP   G 
Sbjct: 822 GERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG----DAGAPGPQGPSGAPGPQGP 877

Query: 62  AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TE 120
              T     R A+G    P  A   PG AGR G PG+       G   G +G  G K   
Sbjct: 878 TGVTGPKGARGAQG----PPGATGFPGAAGRVGPPGSNGNPGPPGP-PGPSGKDGPKGAR 932

Query: 121 GLARAPGGAPGHGLQG 136
           G +  PG A   GLQG
Sbjct: 933 GDSGPPGRAGEPGLQG 948



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 41/134 (30%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG----KAPP 59
           G R    TP      G     G P    A G A +  +K    +      PG    +  P
Sbjct: 273 GARGFPGTPG---LPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 329

Query: 60  GAAKSTSRVHCRAAEGGGLRPVPAVPLP--GPAGRSGGPGAWSAQKHGGHLSGRAGGTGR 117
           G    T       A G   +P PA P    GPAG  G PGA  A+       G AG TG 
Sbjct: 330 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK-------GEAGPTGA 382

Query: 118 KTEGLARAPGGAPG 131
           +    A+ P G PG
Sbjct: 383 RGPEGAQGPRGEPG 396



 Score = 36.6 bits (83), Expect = 0.014
 Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 11/131 (8%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSRVHCRAAE 74
           GP  G G P    A G A     +  E A      PG      P GA+ +        A+
Sbjct: 360 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 419

Query: 75  GG----GLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGH--LSGRAGGTGRKTEGLARAPG 127
           G     G+   P  P P GP G  G  G    +   G   ++G  G  G K E     P 
Sbjct: 420 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 479

Query: 128 GAPGHGLQGGQ 138
           GAPG   + G+
Sbjct: 480 GAPGPAGEEGK 490



 Score = 35.4 bits (80), Expect = 0.031
 Identities = 46/143 (32%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G R    TP S    GP   +G P      G   S     +  A   P P G  PPG   
Sbjct: 390 GPRGEPGTPGS---PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG--PPGPQG 444

Query: 64  STSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPG-AWSAQKHGGHLSGRAGGTGR 117
           +T  +  +   G     G          PGPAG  G PG A    K G    G  GG G 
Sbjct: 445 ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR--GEPGGVGP 502

Query: 118 -KTEGLARAPG--GAPGH-GLQG 136
               G   APG  G PG  GL G
Sbjct: 503 IGPPGERGAPGNRGFPGQDGLAG 525



 Score = 35.4 bits (80), Expect = 0.031
 Identities = 37/138 (26%), Positives = 45/138 (32%), Gaps = 11/138 (7%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G+      P      GP    G       TG       K  +     P P G  P GA  
Sbjct: 426 GIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG--PQGAPG 483

Query: 64  STSRVHCRAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEG 121
                  R A G  GG+ P+      GP G  G PG        G L+G  G  G +   
Sbjct: 484 PAGEEGKRGARGEPGGVGPI------GPPGERGAPGNRGFPGQDG-LAGPKGAPGERGPS 536

Query: 122 LARAPGGAPGHGLQGGQP 139
               P GA G   + G+P
Sbjct: 537 GLAGPKGANGDPGRPGEP 554



 Score = 35.0 bits (79), Expect = 0.040
 Identities = 40/141 (28%), Positives = 46/141 (32%), Gaps = 28/141 (19%)

Query: 17  AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----------APPGAAKSTS 66
           A GPP   G P E  A G A     +           PGK           PPG A +  
Sbjct: 742 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG 801

Query: 67  RVHCRAAEG----GGLRPVPA----VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118
                   G     G R  P        PGPAG +G PGA           G+ G  G +
Sbjct: 802 EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA----------DGQPGAKGEQ 851

Query: 119 TEGLARAPGGAPGHGLQGGQP 139
            E   +   GAPG     G P
Sbjct: 852 GEAGQKGDAGAPGPQGPSGAP 872



 Score = 34.7 bits (78), Expect = 0.052
 Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 10/129 (7%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-------PGAAKS 64
            P     AGPP   G P +   +G       + +     +   PG+         PG +  
Sbjct: 944  PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 1003

Query: 65   TSRVHCRAAEGGGLRPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122
              +     A G    P P  P  L GPAG  G  G+  A    G   G AG  G + E  
Sbjct: 1004 PGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR-DGAAGVKGDRGETG 1062

Query: 123  ARAPGGAPG 131
            A    GAPG
Sbjct: 1063 AVGAPGAPG 1071



 Score = 30.8 bits (68), Expect = 0.76
 Identities = 41/131 (31%), Positives = 49/131 (37%), Gaps = 26/131 (19%)

Query: 12  PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-PGAAKSTSRVHC 70
           P     AGP    G P E   +G A        + A+  P  PG+   PGA   T R   
Sbjct: 518 PGQDGLAGPK---GAPGERGPSGLAGP------KGANGDPGRPGEPGLPGARGLTGR--- 565

Query: 71  RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--------SGRAGGTGRKTEGL 122
              + G    V     PG  GR G PG   A+   G +        +G  G  G K  GL
Sbjct: 566 -PGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK--GL 622

Query: 123 ARAPG--GAPG 131
             APG  G PG
Sbjct: 623 PGAPGLRGLPG 633



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 32/123 (26%), Positives = 39/123 (31%), Gaps = 20/123 (16%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
           GPP  AG P      G                P  PG + P   +       +  + G  
Sbjct: 210 GPPGPAGAPGPQGFQGNPGE------------PGEPGVSGPMGPRGPPGPPGKPGDDG-- 255

Query: 79  RPVPAVPLPGPAGRSGGPGAWSAQKHGG--HLSGRAGGTGRKTEGLARAPGGAPGHGLQG 136
                   PG AG  G PG   A+   G   L G  G  G      A+   GAPG   + 
Sbjct: 256 ----EAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGES 311

Query: 137 GQP 139
           G P
Sbjct: 312 GSP 314



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 32/125 (25%), Positives = 41/125 (32%), Gaps = 8/125 (6%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
            P +    GPP   G P      G +     K     S    PPG+A     +  +     
Sbjct: 899  PGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS---GPPGRAGEPGLQGPAGPPGE 955

Query: 72   AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGH-----LSGRAGGTGRKTEGLARAP 126
              E G   P  A   PGP G +G  G        G      L G +G  G++    A   
Sbjct: 956  KGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGD 1015

Query: 127  GGAPG 131
             G PG
Sbjct: 1016 RGPPG 1020



 Score = 27.7 bits (60), Expect = 6.4
 Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 14/72 (19%)

Query: 80  PVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGT---------GRKTEGLARAPGGAP 130
           P P  P PGP G  G  G ++AQ  GG    +AGG          G         P GAP
Sbjct: 161 PGPPGP-PGPPGPPGLGGNFAAQMAGG-FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAP 218

Query: 131 G-HGLQG--GQP 139
           G  G QG  G+P
Sbjct: 219 GPQGFQGNPGEP 230


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 44/147 (29%), Positives = 52/147 (35%), Gaps = 21/147 (14%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA------ 57
           GV+    +P    + GP    G P E   TG A +   +  +       PPG        
Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 296

Query: 58  ----PPGAAKSTSRVHCRAAEGG-GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGR 111
                PGA         R  EG  G R  P  P  PGPAG SG PG          + G 
Sbjct: 297 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT-------DGIPGA 349

Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGGQ 138
            G  G    G+A APG     G  G Q
Sbjct: 350 KGSAG--APGIAGAPGFPGPRGPPGPQ 374



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 45/134 (33%), Positives = 47/134 (35%), Gaps = 11/134 (8%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G+R L        AAGPP  AG PA      GA             LP PPG    G   
Sbjct: 558 GLRGLPGKDGETGAAGPPGPAG-PAGERGEQGAPG-----PSGFQGLPGPPGPPGEGGKP 611

Query: 64  STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TEGL 122
               V   A   G + P      P   G  G PGA   Q   G L G  G  G K   G 
Sbjct: 612 GDQGVPGEAGAPGLVGPRGERGFP---GERGSPGAQGLQGPRG-LPGTPGTDGPKGASGP 667

Query: 123 ARAPGGAPGHGLQG 136
           A  PG     GLQG
Sbjct: 668 AGPPGAQGPPGLQG 681



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 44/136 (32%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP--PGA 61
           G R     P     AGPP   G+P      G A        +A +  P+ P  AP   G 
Sbjct: 753 GERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG----DAGAPGPQGPSGAPGPQGP 808

Query: 62  AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TE 120
              T     R A+G    P  A   PG AGR G PG+       G   G +G  G K   
Sbjct: 809 TGVTGPKGARGAQG----PPGATGFPGAAGRVGPPGSNGNPGPPGP-PGPSGKDGPKGAR 863

Query: 121 GLARAPGGAPGHGLQG 136
           G +  PG A   GLQG
Sbjct: 864 GDSGPPGRAGEPGLQG 879



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 41/134 (30%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG----KAPP 59
           G R    TP      G     G P    A G A +  +K    +      PG    +  P
Sbjct: 204 GARGFPGTPG---LPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 260

Query: 60  GAAKSTSRVHCRAAEGGGLRPVPAVPLP--GPAGRSGGPGAWSAQKHGGHLSGRAGGTGR 117
           G    T       A G   +P PA P    GPAG  G PGA  A+       G AG TG 
Sbjct: 261 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK-------GEAGPTGA 313

Query: 118 KTEGLARAPGGAPG 131
           +    A+ P G PG
Sbjct: 314 RGPEGAQGPRGEPG 327



 Score = 36.6 bits (83), Expect = 0.014
 Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 11/131 (8%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSRVHCRAAE 74
           GP  G G P    A G A     +  E A      PG      P GA+ +        A+
Sbjct: 291 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 350

Query: 75  GG----GLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGH--LSGRAGGTGRKTEGLARAPG 127
           G     G+   P  P P GP G  G  G    +   G   ++G  G  G K E     P 
Sbjct: 351 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 410

Query: 128 GAPGHGLQGGQ 138
           GAPG   + G+
Sbjct: 411 GAPGPAGEEGK 421



 Score = 35.4 bits (80), Expect = 0.031
 Identities = 46/143 (32%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G R    TP S    GP   +G P      G   S     +  A   P P G  PPG   
Sbjct: 321 GPRGEPGTPGS---PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG--PPGPQG 375

Query: 64  STSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPG-AWSAQKHGGHLSGRAGGTGR 117
           +T  +  +   G     G          PGPAG  G PG A    K G    G  GG G 
Sbjct: 376 ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR--GEPGGVGP 433

Query: 118 -KTEGLARAPG--GAPGH-GLQG 136
               G   APG  G PG  GL G
Sbjct: 434 IGPPGERGAPGNRGFPGQDGLAG 456



 Score = 35.4 bits (80), Expect = 0.031
 Identities = 37/138 (26%), Positives = 45/138 (32%), Gaps = 11/138 (7%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G+      P      GP    G       TG       K  +     P P G  P GA  
Sbjct: 357 GIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG--PQGAPG 414

Query: 64  STSRVHCRAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEG 121
                  R A G  GG+ P+      GP G  G PG        G L+G  G  G +   
Sbjct: 415 PAGEEGKRGARGEPGGVGPI------GPPGERGAPGNRGFPGQDG-LAGPKGAPGERGPS 467

Query: 122 LARAPGGAPGHGLQGGQP 139
               P GA G   + G+P
Sbjct: 468 GLAGPKGANGDPGRPGEP 485



 Score = 35.0 bits (79), Expect = 0.040
 Identities = 40/141 (28%), Positives = 46/141 (32%), Gaps = 28/141 (19%)

Query: 17  AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----------APPGAAKSTS 66
           A GPP   G P E  A G A     +           PGK           PPG A +  
Sbjct: 673 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG 732

Query: 67  RVHCRAAEG----GGLRPVPA----VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118
                   G     G R  P        PGPAG +G PGA           G+ G  G +
Sbjct: 733 EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA----------DGQPGAKGEQ 782

Query: 119 TEGLARAPGGAPGHGLQGGQP 139
            E   +   GAPG     G P
Sbjct: 783 GEAGQKGDAGAPGPQGPSGAP 803



 Score = 34.7 bits (78), Expect = 0.052
 Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 10/129 (7%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-------PGAAKS 64
            P     AGPP   G P +   +G       + +     +   PG+         PG +  
Sbjct: 875  PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 934

Query: 65   TSRVHCRAAEGGGLRPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122
              +     A G    P P  P  L GPAG  G  G+  A    G   G AG  G + E  
Sbjct: 935  PGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR-DGAAGVKGDRGETG 993

Query: 123  ARAPGGAPG 131
            A    GAPG
Sbjct: 994  AVGAPGAPG 1002



 Score = 30.8 bits (68), Expect = 0.76
 Identities = 41/131 (31%), Positives = 49/131 (37%), Gaps = 26/131 (19%)

Query: 12  PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-PGAAKSTSRVHC 70
           P     AGP    G P E   +G A        + A+  P  PG+   PGA   T R   
Sbjct: 449 PGQDGLAGPK---GAPGERGPSGLAGP------KGANGDPGRPGEPGLPGARGLTGR--- 496

Query: 71  RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--------SGRAGGTGRKTEGL 122
              + G    V     PG  GR G PG   A+   G +        +G  G  G K  GL
Sbjct: 497 -PGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK--GL 553

Query: 123 ARAPG--GAPG 131
             APG  G PG
Sbjct: 554 PGAPGLRGLPG 564



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 32/123 (26%), Positives = 39/123 (31%), Gaps = 20/123 (16%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
           GPP  AG P      G                P  PG + P   +       +  + G  
Sbjct: 141 GPPGPAGAPGPQGFQGNPGE------------PGEPGVSGPMGPRGPPGPPGKPGDDG-- 186

Query: 79  RPVPAVPLPGPAGRSGGPGAWSAQKHGG--HLSGRAGGTGRKTEGLARAPGGAPGHGLQG 136
                   PG AG  G PG   A+   G   L G  G  G      A+   GAPG   + 
Sbjct: 187 ----EAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGES 242

Query: 137 GQP 139
           G P
Sbjct: 243 GSP 245



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 32/125 (25%), Positives = 41/125 (32%), Gaps = 8/125 (6%)

Query: 12  PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
           P +    GPP   G P      G +     K     S    PPG+A     +  +     
Sbjct: 830 PGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS---GPPGRAGEPGLQGPAGPPGE 886

Query: 72  AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGH-----LSGRAGGTGRKTEGLARAP 126
             E G   P  A   PGP G +G  G        G      L G +G  G++    A   
Sbjct: 887 KGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGD 946

Query: 127 GGAPG 131
            G PG
Sbjct: 947 RGPPG 951



 Score = 27.7 bits (60), Expect = 6.4
 Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 14/72 (19%)

Query: 80  PVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGT---------GRKTEGLARAPGGAP 130
           P P  P PGP G  G  G ++AQ  GG    +AGG          G         P GAP
Sbjct: 92  PGPPGP-PGPPGPPGLGGNFAAQMAGG-FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAP 149

Query: 131 G-HGLQG--GQP 139
           G  G QG  G+P
Sbjct: 150 GPQGFQGNPGEP 161


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 41/121 (33%), Positives = 48/121 (39%), Gaps = 26/121 (21%)

Query: 21  PDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRP 80
           P+G G+P    A G       K +  A  +  PPG  PPG  K                 
Sbjct: 260 PEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPG--PPGFGK----------------- 300

Query: 81  VPAVP----LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG-HGLQ 135
            P +P      GPAG  GGPGA   Q   G L G+ G TG       + P G PG HGL 
Sbjct: 301 -PGLPGLKGERGPAGLPGGPGAKGEQGPAG-LPGKPGLTGPPGNMGPQGPKGIPGSHGLP 358

Query: 136 G 136
           G
Sbjct: 359 G 359



 Score = 35.0 bits (79), Expect = 0.040
 Identities = 42/148 (28%), Positives = 47/148 (31%), Gaps = 17/148 (11%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPA------EHEATGGASSLHIKCMEAASLLPR----- 52
           G + L   P      GPP G G+P       E    G       K  +  + LP      
Sbjct: 279 GTKGLPGAPGIAGPPGPP-GFGKPGLPGLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLT 337

Query: 53  -PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGR 111
            PPG   P   K     H      G   P      PG  G  G PG  S  K G    G+
Sbjct: 338 GPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPG--SDGKPG--YPGK 393

Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGGQP 139
            G  G K       P G PG G   G P
Sbjct: 394 PGLDGPKGNPGLPGPKGDPGVGGPPGLP 421



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 34/118 (28%), Positives = 42/118 (35%), Gaps = 17/118 (14%)

Query: 19  GPPDGAGRPAEHEATG--GASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
           GPP  AG       +G  G        ++    LP PPG +  G       +  +  E G
Sbjct: 63  GPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKP-GVPGLPGKPGERG 121

Query: 77  GLRP---VPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
              P   V    LPGP G  G PG       G  + G+ G  G         P GAPG
Sbjct: 122 PYGPKGDVGPAGLPGPRGPPGPPGI--PGPAGISVPGKPGQQG---------PTGAPG 168



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 12/52 (23%)

Query: 87  PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPG--GAPGHGLQG 136
           PGPAG  G PG           SG  G  G  + GL   PG  G PG    G
Sbjct: 65  PGPAGPRGHPGP----------SGPPGKPGYGSPGLQGEPGLPGPPGPSAVG 106


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 45/135 (33%), Positives = 50/135 (37%), Gaps = 27/135 (20%)

Query: 12  PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG---KAPPGAAKST--- 65
           PA    + PP  +  P     T GA              P PP     APPGA   T   
Sbjct: 117 PAPGVGSAPPASSSAPPATPPTSGAPP-----GSGPGPTPTPPPAVTSAPPGAPPPTPPS 171

Query: 66  SRVHCRAAEGGGLRPVPA-VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124
           S V     + GG  P PA VP PGP G   GPG       GG   G+  G  +       
Sbjct: 172 SGVPTTPPQAGGPPPPPAAVPGPGP-GPKQGPGP------GGPKGGKMPGGPK------- 217

Query: 125 APGGAPGHGLQGGQP 139
            PGG PG    GG P
Sbjct: 218 -PGGGPGLSTPGGHP 231


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 42/130 (32%), Positives = 52/130 (40%), Gaps = 19/130 (14%)

Query: 19   GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
            GPP   G P E  + G A  +         L  RP  + PPG A        +  +G   
Sbjct: 1063 GPPGPVGSPGERGSAGTAGPI--------GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1114

Query: 79   RPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-------GLARAPGGA 129
            R     P  LPGPAG +G PG    +   G   G+ G  G K E       GL + P GA
Sbjct: 1115 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE-PGQKGSKGDKGENGPPGPPGL-QGPVGA 1172

Query: 130  PGHGLQGGQP 139
            PG     G+P
Sbjct: 1173 PGIAGGDGEP 1182



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 43/131 (32%), Positives = 52/131 (39%), Gaps = 23/131 (17%)

Query: 17   AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
            AAGPP   G P +    G    +           P PPG+  PG A        +  +G 
Sbjct: 1301 AAGPPGAKGPPGDDGPKGNPGPVGFPGD------PGPPGE--PGPAGQDGVGGDKGEDGD 1352

Query: 77   GLRPVPAVPL-----PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
              +P P  P      PGP G+ G PGA  A+       GR G  G K E  A  P G  G
Sbjct: 1353 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE-------GRQGEKGAKGEAGAEGPPGKTG 1405

Query: 132  H-GLQG--GQP 139
              G QG  G+P
Sbjct: 1406 PVGPQGPAGKP 1416



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 40/133 (30%), Positives = 43/133 (32%), Gaps = 18/133 (13%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-------APPGAAKS 64
            P      G P  AG   E    G       K  E A   P PPG         PPG    
Sbjct: 1164 PGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1219

Query: 65   TSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124
                     E G + P+     PGP G  G  GA   Q   G + G  GG G K E    
Sbjct: 1220 ------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSV-GSVGGVGEKGEPGEA 1272

Query: 125  APGGAPGHGLQGG 137
               G PG    GG
Sbjct: 1273 GNPGPPGEAGVGG 1285



 Score = 37.7 bits (86), Expect = 0.006
 Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSR 67
            P     AGPP   G+     A G       K  +  +    PPGK     P G A     
Sbjct: 1359 PGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1418

Query: 68   VHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE----GLA 123
               R   G    PV    LPG AG+ G PG        G L G  G  G K      GL 
Sbjct: 1419 EGLRGIPG----PVGEQGLPGAAGQDGPPGPMGPPGLPG-LKGDPGSKGEKGHPGLIGLI 1473

Query: 124  RAPG--GAPG-HGLQGGQ 138
              PG  G  G  GL G Q
Sbjct: 1474 GPPGEQGEKGDRGLPGTQ 1491



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 34/128 (26%), Positives = 40/128 (31%), Gaps = 4/128 (3%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
            P      GP    G      + G    +  K     +  P PPG+A  G  K        
Sbjct: 1236 PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1295

Query: 72   AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
            A   G   P  A   PG  G  G PG        G   G  G  G+   G  +   G PG
Sbjct: 1296 AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP-PGEPGPAGQDGVGGDKGEDGDPG 1354

Query: 132  HGLQGGQP 139
               Q G P
Sbjct: 1355 ---QPGPP 1359



 Score = 31.6 bits (70), Expect = 0.44
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 87  PGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPG--GAPGHGLQGGQ 138
           PGP G+ G PG        G +   G  G  G+   GLA  PG  G PGH  + GQ
Sbjct: 699 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGK--PGLAGLPGADGPPGHPGKEGQ 752



 Score = 30.4 bits (67), Expect = 0.99
 Identities = 35/128 (27%), Positives = 40/128 (31%), Gaps = 25/128 (19%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G R +   P      GP    G       TG          +  S    PPG  PPG   
Sbjct: 880 GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP------KGTSGGDGPPG--PPG--- 928

Query: 64  STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
                     E G   P   V  PGP G  G PG      H     G+ G TG + +   
Sbjct: 929 ----------ERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH----PGQRGETGFQGKTGP 974

Query: 124 RAPGGAPG 131
             PGG  G
Sbjct: 975 PGPGGVVG 982



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 10/123 (8%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHC 70
            P +    GPP   G P      G   S   K       L  PPG+    G          
Sbjct: 1434 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1493

Query: 71   RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--SGRAGGTGRKTEGLARAPGG 128
              A+G G        +PGPAG  G PG        G     G  G  G+K +     P G
Sbjct: 1494 PGAKGDG-------GIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPG 1546

Query: 129  APG 131
            +PG
Sbjct: 1547 SPG 1549



 Score = 28.9 bits (63), Expect = 2.9
 Identities = 32/138 (23%), Positives = 43/138 (31%), Gaps = 7/138 (5%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G++     P      GPP   G P      G   ++ +          + P  +   A  
Sbjct: 469 GLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA 528

Query: 64  STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG-----HLSGRAGGTGRK 118
                  R A  G   P+     PGP G  G  GA       G      + G  G TG+ 
Sbjct: 529 QAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK- 587

Query: 119 TEGLARAPGGAPGHGLQG 136
             G    PG   G G+ G
Sbjct: 588 -PGKRGRPGADGGRGMPG 604



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 25/143 (17%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA----PP 59
            G +  V  P      GPP   G P  H    G +    K          PPG      P 
Sbjct: 934  GPQGPVGFPGPKGPPGPPGKDGLPG-HPGQRGETGFQGKT--------GPPGPGGVVGPQ 984

Query: 60   GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRS---GGPGAWSAQKHGGHLSGRAGGTG 116
            G    T  +  R   G    P     LPG AG+    G PG          +SG+ G  G
Sbjct: 985  GPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQG-------ISGKDGPAG 1036

Query: 117  -RKTEGLARAPGGAPGHGLQGGQ 138
             R   G    PG     GL+GG+
Sbjct: 1037 LRGFPGERGLPGAQGAPGLKGGE 1059



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 55  GKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGG 114
           G+  P     +S     + + G   P      PGP G+ G  G   A   G  + G  G 
Sbjct: 550 GRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGAD-GGRGMPGEPGA 608

Query: 115 TG-RKTEGLARAPGGAPGHGLQGGQ 138
            G R  +GL   PG     G +G Q
Sbjct: 609 KGDRGFDGLPGLPGDKGHRGERGPQ 633



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 30/92 (32%), Positives = 33/92 (35%), Gaps = 15/92 (16%)

Query: 51  PRPPGKA----PPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG 106
           P  PG A    PPG   +          G    P P   LPGP G  G PG    Q   G
Sbjct: 675 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ-GLPGPQGPIGPPGEKGPQGKPG 733

Query: 107 HLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQ 138
            L+G  G  G         P G PG   Q G+
Sbjct: 734 -LAGLPGADG---------PPGHPGKEGQSGE 755


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 42/130 (32%), Positives = 52/130 (40%), Gaps = 19/130 (14%)

Query: 19   GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
            GPP   G P E  + G A  +         L  RP  + PPG A        +  +G   
Sbjct: 1012 GPPGPVGSPGERGSAGTAGPI--------GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1063

Query: 79   RPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-------GLARAPGGA 129
            R     P  LPGPAG +G PG    +   G   G+ G  G K E       GL + P GA
Sbjct: 1064 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE-PGQKGSKGDKGENGPPGPPGL-QGPVGA 1121

Query: 130  PGHGLQGGQP 139
            PG     G+P
Sbjct: 1122 PGIAGGDGEP 1131



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 43/131 (32%), Positives = 52/131 (39%), Gaps = 23/131 (17%)

Query: 17   AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
            AAGPP   G P +    G    +           P PPG+  PG A        +  +G 
Sbjct: 1250 AAGPPGAKGPPGDDGPKGNPGPVGFPGD------PGPPGE--PGPAGQDGVGGDKGEDGD 1301

Query: 77   GLRPVPAVPL-----PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
              +P P  P      PGP G+ G PGA  A+       GR G  G K E  A  P G  G
Sbjct: 1302 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE-------GRQGEKGAKGEAGAEGPPGKTG 1354

Query: 132  H-GLQG--GQP 139
              G QG  G+P
Sbjct: 1355 PVGPQGPAGKP 1365



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 40/133 (30%), Positives = 43/133 (32%), Gaps = 18/133 (13%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-------APPGAAKS 64
            P      G P  AG   E    G       K  E A   P PPG         PPG    
Sbjct: 1113 PGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1168

Query: 65   TSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124
                     E G + P+     PGP G  G  GA   Q   G + G  GG G K E    
Sbjct: 1169 ------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSV-GSVGGVGEKGEPGEA 1221

Query: 125  APGGAPGHGLQGG 137
               G PG    GG
Sbjct: 1222 GNPGPPGEAGVGG 1234



 Score = 37.7 bits (86), Expect = 0.006
 Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSR 67
            P     AGPP   G+     A G       K  +  +    PPGK     P G A     
Sbjct: 1308 PGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1367

Query: 68   VHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE----GLA 123
               R   G    PV    LPG AG+ G PG        G L G  G  G K      GL 
Sbjct: 1368 EGLRGIPG----PVGEQGLPGAAGQDGPPGPMGPPGLPG-LKGDPGSKGEKGHPGLIGLI 1422

Query: 124  RAPG--GAPG-HGLQGGQ 138
              PG  G  G  GL G Q
Sbjct: 1423 GPPGEQGEKGDRGLPGTQ 1440



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 34/128 (26%), Positives = 40/128 (31%), Gaps = 4/128 (3%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
            P      GP    G      + G    +  K     +  P PPG+A  G  K        
Sbjct: 1185 PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1244

Query: 72   AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
            A   G   P  A   PG  G  G PG        G   G  G  G+   G  +   G PG
Sbjct: 1245 AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP-PGEPGPAGQDGVGGDKGEDGDPG 1303

Query: 132  HGLQGGQP 139
               Q G P
Sbjct: 1304 ---QPGPP 1308



 Score = 31.6 bits (70), Expect = 0.44
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 87  PGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPG--GAPGHGLQGGQ 138
           PGP G+ G PG        G +   G  G  G+   GLA  PG  G PGH  + GQ
Sbjct: 648 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGK--PGLAGLPGADGPPGHPGKEGQ 701



 Score = 30.4 bits (67), Expect = 0.99
 Identities = 35/128 (27%), Positives = 40/128 (31%), Gaps = 25/128 (19%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G R +   P      GP    G       TG          +  S    PPG  PPG   
Sbjct: 829 GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP------KGTSGGDGPPG--PPG--- 877

Query: 64  STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
                     E G   P   V  PGP G  G PG      H     G+ G TG + +   
Sbjct: 878 ----------ERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH----PGQRGETGFQGKTGP 923

Query: 124 RAPGGAPG 131
             PGG  G
Sbjct: 924 PGPGGVVG 931



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 10/123 (8%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHC 70
            P +    GPP   G P      G   S   K       L  PPG+    G          
Sbjct: 1383 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1442

Query: 71   RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--SGRAGGTGRKTEGLARAPGG 128
              A+G G        +PGPAG  G PG        G     G  G  G+K +     P G
Sbjct: 1443 PGAKGDG-------GIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPG 1495

Query: 129  APG 131
            +PG
Sbjct: 1496 SPG 1498



 Score = 28.9 bits (63), Expect = 2.9
 Identities = 32/138 (23%), Positives = 43/138 (31%), Gaps = 7/138 (5%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G++     P      GPP   G P      G   ++ +          + P  +   A  
Sbjct: 418 GLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA 477

Query: 64  STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG-----HLSGRAGGTGRK 118
                  R A  G   P+     PGP G  G  GA       G      + G  G TG+ 
Sbjct: 478 QAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK- 536

Query: 119 TEGLARAPGGAPGHGLQG 136
             G    PG   G G+ G
Sbjct: 537 -PGKRGRPGADGGRGMPG 553



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 25/143 (17%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA----PP 59
            G +  V  P      GPP   G P  H    G +    K          PPG      P 
Sbjct: 883  GPQGPVGFPGPKGPPGPPGKDGLPG-HPGQRGETGFQGKT--------GPPGPGGVVGPQ 933

Query: 60   GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRS---GGPGAWSAQKHGGHLSGRAGGTG 116
            G    T  +  R   G    P     LPG AG+    G PG          +SG+ G  G
Sbjct: 934  GPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQG-------ISGKDGPAG 985

Query: 117  -RKTEGLARAPGGAPGHGLQGGQ 138
             R   G    PG     GL+GG+
Sbjct: 986  LRGFPGERGLPGAQGAPGLKGGE 1008



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 55  GKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGG 114
           G+  P     +S     + + G   P      PGP G+ G  G   A   G  + G  G 
Sbjct: 499 GRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGAD-GGRGMPGEPGA 557

Query: 115 TG-RKTEGLARAPGGAPGHGLQGGQ 138
            G R  +GL   PG     G +G Q
Sbjct: 558 KGDRGFDGLPGLPGDKGHRGERGPQ 582



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 30/92 (32%), Positives = 33/92 (35%), Gaps = 15/92 (16%)

Query: 51  PRPPGKA----PPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG 106
           P  PG A    PPG   +          G    P P   LPGP G  G PG    Q   G
Sbjct: 624 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ-GLPGPQGPIGPPGEKGPQGKPG 682

Query: 107 HLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQ 138
            L+G  G  G         P G PG   Q G+
Sbjct: 683 -LAGLPGADG---------PPGHPGKEGQSGE 704


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 42/130 (32%), Positives = 52/130 (40%), Gaps = 19/130 (14%)

Query: 19   GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
            GPP   G P E  + G A  +         L  RP  + PPG A        +  +G   
Sbjct: 1051 GPPGPVGSPGERGSAGTAGPI--------GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1102

Query: 79   RPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-------GLARAPGGA 129
            R     P  LPGPAG +G PG    +   G   G+ G  G K E       GL + P GA
Sbjct: 1103 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE-PGQKGSKGDKGENGPPGPPGL-QGPVGA 1160

Query: 130  PGHGLQGGQP 139
            PG     G+P
Sbjct: 1161 PGIAGGDGEP 1170



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 43/131 (32%), Positives = 52/131 (39%), Gaps = 23/131 (17%)

Query: 17   AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
            AAGPP   G P +    G    +           P PPG+  PG A        +  +G 
Sbjct: 1289 AAGPPGAKGPPGDDGPKGNPGPVGFPGD------PGPPGE--PGPAGQDGVGGDKGEDGD 1340

Query: 77   GLRPVPAVPL-----PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
              +P P  P      PGP G+ G PGA  A+       GR G  G K E  A  P G  G
Sbjct: 1341 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE-------GRQGEKGAKGEAGAEGPPGKTG 1393

Query: 132  H-GLQG--GQP 139
              G QG  G+P
Sbjct: 1394 PVGPQGPAGKP 1404



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 40/133 (30%), Positives = 43/133 (32%), Gaps = 18/133 (13%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-------APPGAAKS 64
            P      G P  AG   E    G       K  E A   P PPG         PPG    
Sbjct: 1152 PGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1207

Query: 65   TSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124
                     E G + P+     PGP G  G  GA   Q   G + G  GG G K E    
Sbjct: 1208 ------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSV-GSVGGVGEKGEPGEA 1260

Query: 125  APGGAPGHGLQGG 137
               G PG    GG
Sbjct: 1261 GNPGPPGEAGVGG 1273



 Score = 37.7 bits (86), Expect = 0.006
 Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSR 67
            P     AGPP   G+     A G       K  +  +    PPGK     P G A     
Sbjct: 1347 PGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1406

Query: 68   VHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE----GLA 123
               R   G    PV    LPG AG+ G PG        G L G  G  G K      GL 
Sbjct: 1407 EGLRGIPG----PVGEQGLPGAAGQDGPPGPMGPPGLPG-LKGDPGSKGEKGHPGLIGLI 1461

Query: 124  RAPG--GAPG-HGLQGGQ 138
              PG  G  G  GL G Q
Sbjct: 1462 GPPGEQGEKGDRGLPGTQ 1479



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 34/128 (26%), Positives = 40/128 (31%), Gaps = 4/128 (3%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
            P      GP    G      + G    +  K     +  P PPG+A  G  K        
Sbjct: 1224 PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1283

Query: 72   AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
            A   G   P  A   PG  G  G PG        G   G  G  G+   G  +   G PG
Sbjct: 1284 AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP-PGEPGPAGQDGVGGDKGEDGDPG 1342

Query: 132  HGLQGGQP 139
               Q G P
Sbjct: 1343 ---QPGPP 1347



 Score = 31.6 bits (70), Expect = 0.44
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 87  PGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPG--GAPGHGLQGGQ 138
           PGP G+ G PG        G +   G  G  G+   GLA  PG  G PGH  + GQ
Sbjct: 687 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGK--PGLAGLPGADGPPGHPGKEGQ 740



 Score = 30.4 bits (67), Expect = 0.99
 Identities = 35/128 (27%), Positives = 40/128 (31%), Gaps = 25/128 (19%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G R +   P      GP    G       TG          +  S    PPG  PPG   
Sbjct: 868 GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP------KGTSGGDGPPG--PPG--- 916

Query: 64  STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
                     E G   P   V  PGP G  G PG      H     G+ G TG + +   
Sbjct: 917 ----------ERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH----PGQRGETGFQGKTGP 962

Query: 124 RAPGGAPG 131
             PGG  G
Sbjct: 963 PGPGGVVG 970



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 10/123 (8%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHC 70
            P +    GPP   G P      G   S   K       L  PPG+    G          
Sbjct: 1422 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1481

Query: 71   RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--SGRAGGTGRKTEGLARAPGG 128
              A+G G        +PGPAG  G PG        G     G  G  G+K +     P G
Sbjct: 1482 PGAKGDG-------GIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPG 1534

Query: 129  APG 131
            +PG
Sbjct: 1535 SPG 1537



 Score = 28.9 bits (63), Expect = 2.9
 Identities = 32/138 (23%), Positives = 43/138 (31%), Gaps = 7/138 (5%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G++     P      GPP   G P      G   ++ +          + P  +   A  
Sbjct: 457 GLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA 516

Query: 64  STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG-----HLSGRAGGTGRK 118
                  R A  G   P+     PGP G  G  GA       G      + G  G TG+ 
Sbjct: 517 QAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK- 575

Query: 119 TEGLARAPGGAPGHGLQG 136
             G    PG   G G+ G
Sbjct: 576 -PGKRGRPGADGGRGMPG 592



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 25/143 (17%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA----PP 59
            G +  V  P      GPP   G P  H    G +    K          PPG      P 
Sbjct: 922  GPQGPVGFPGPKGPPGPPGKDGLPG-HPGQRGETGFQGKT--------GPPGPGGVVGPQ 972

Query: 60   GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRS---GGPGAWSAQKHGGHLSGRAGGTG 116
            G    T  +  R   G    P     LPG AG+    G PG          +SG+ G  G
Sbjct: 973  GPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQG-------ISGKDGPAG 1024

Query: 117  -RKTEGLARAPGGAPGHGLQGGQ 138
             R   G    PG     GL+GG+
Sbjct: 1025 LRGFPGERGLPGAQGAPGLKGGE 1047



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 55  GKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGG 114
           G+  P     +S     + + G   P      PGP G+ G  G   A   G  + G  G 
Sbjct: 538 GRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGAD-GGRGMPGEPGA 596

Query: 115 TG-RKTEGLARAPGGAPGHGLQGGQ 138
            G R  +GL   PG     G +G Q
Sbjct: 597 KGDRGFDGLPGLPGDKGHRGERGPQ 621



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 30/92 (32%), Positives = 33/92 (35%), Gaps = 15/92 (16%)

Query: 51  PRPPGKA----PPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG 106
           P  PG A    PPG   +          G    P P   LPGP G  G PG    Q   G
Sbjct: 663 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ-GLPGPQGPIGPPGEKGPQGKPG 721

Query: 107 HLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQ 138
            L+G  G  G         P G PG   Q G+
Sbjct: 722 -LAGLPGADG---------PPGHPGKEGQSGE 743


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 38/121 (31%), Positives = 45/121 (37%), Gaps = 18/121 (14%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
           GPP   GR  E   TG                P PPG  PPG   + +  +     G G 
Sbjct: 45  GPPGPPGRDGEDGPTGPPGP------------PGPPG--PPGLGGNFAAQYDGKGVGLGP 90

Query: 79  RPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQ 138
            P+  +   GP G +G PG    Q   G   G  G TG      AR P G PG   + G 
Sbjct: 91  GPMGLMGPRGPPGAAGAPGPQGFQGPAGE-PGEPGQTG---PAGARGPAGPPGKAGEDGH 146

Query: 139 P 139
           P
Sbjct: 147 P 147



 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 46/160 (28%), Positives = 56/160 (35%), Gaps = 27/160 (16%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATG-----------GASSLHIKCMEAASLLPR 52
           G+R  +  P    A G P   G P    ATG           G +       E   + P 
Sbjct: 661 GLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPA 720

Query: 53  PPG--KAPPGAAKSTSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPGAWSAQKHG 105
            P     P GAA        R A+G     G + P   V   GPAG +G PG   ++  G
Sbjct: 721 GPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDG 780

Query: 106 G-----HLSGRAGGTGRKTEGLARAPGGAPG----HGLQG 136
           G        G AG TG         P G PG     GL+G
Sbjct: 781 GPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRG 820



 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 42/147 (28%), Positives = 56/147 (38%), Gaps = 27/147 (18%)

Query: 4   GVRSLVSTPASWSAAGP-----PDG-AGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA 57
           G   ++  P S  A+GP     P+G AGRP E    G               LP  PG  
Sbjct: 412 GRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRG------------LPGSPGNI 459

Query: 58  PPGAAKSTSRVHCRAAEGGGLRPVPA------VPLPGPAGRSGGPGAWSAQKHGGHLSGR 111
            P   +    +       G + P  A      +  PGP G +G PG    + H G L+G 
Sbjct: 460 GPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAG-LAGA 518

Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGGQ 138
            G  G      A+ P G    G+QGG+
Sbjct: 519 RGAPGPDGNNGAQGPPGP--QGVQGGK 543



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 41/129 (31%), Positives = 50/129 (38%), Gaps = 12/129 (9%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAA 62
           G R  V  P     +GP    G P  +  TG   +  +  +  A  LP P G   P GAA
Sbjct: 280 GPRGEVGLPG---LSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAA 336

Query: 63  KSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122
            +T       A G    P PA    G +G  G PG+   Q   G  SG  G  G   E  
Sbjct: 337 GAT------GARGLVGEPGPA-GSKGESGNKGEPGSAGPQGPPGP-SGEEGKRGPNGEAG 388

Query: 123 ARAPGGAPG 131
           +  P G PG
Sbjct: 389 SAGPPGPPG 397



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 42/136 (30%), Positives = 48/136 (35%), Gaps = 22/136 (16%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG----KAPPG---AAKSTSRVHCR 71
           GPP   G P      G       + +     LP P G    + PPG   AA  T  +  R
Sbjct: 550 GPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSR 609

Query: 72  AAEG--------GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
              G        G    V AV   GP+G SG PG   A       +G  GG G K E   
Sbjct: 610 GPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGA-------AGIPGGKGEKGEPGL 662

Query: 124 RAPGGAPGHGLQGGQP 139
           R   G PG     G P
Sbjct: 663 RGEIGNPGRDGARGAP 678



 Score = 36.2 bits (82), Expect = 0.018
 Identities = 43/141 (30%), Positives = 49/141 (34%), Gaps = 20/141 (14%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATG--GASSLHIKCMEAASLLPRPPGKAPPGA 61
            GV   V  P     AGPP   G P    + G  GA          A     P    PPG 
Sbjct: 886  GVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPG-------EAGRDGNPGNDGPPGR 938

Query: 62   AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEG 121
                     R    G + PV A   PGP G  G  G     KHG    G  G +G     
Sbjct: 939  DGQPGHKGERGYP-GNIGPVGAAGAPGPHGPVGPAG-----KHGNR--GETGPSGPVGPA 990

Query: 122  LARAPGGAPG-HGLQG--GQP 139
             A  P G  G  G++G  G+P
Sbjct: 991  GAVGPRGPSGPQGIRGDKGEP 1011



 Score = 35.4 bits (80), Expect = 0.031
 Identities = 41/132 (31%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 17  AAGPPDGAGRPA---EHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAAKSTSRVHCRA 72
           +AGPP   G P    E  A G A             LP   G   PPG   +      + 
Sbjct: 251 SAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKG 310

Query: 73  AEGGGLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHL-----SGRAGGTGRKTEGLARAP 126
           A   GL  V   P LPGP G  G  GA  A    G +     +G  G +G K E  +  P
Sbjct: 311 A--AGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGP 368

Query: 127 GGAPGHGLQGGQ 138
            G PG   + G+
Sbjct: 369 QGPPGPSGEEGK 380



 Score = 34.3 bits (77), Expect = 0.068
 Identities = 38/136 (27%), Positives = 45/136 (33%), Gaps = 31/136 (22%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
           GPP  AG P      G A              P  PG+  P  A+  +    +A E G  
Sbjct: 100 GPPGAAGAPGPQGFQGPAGE------------PGEPGQTGPAGARGPAGPPGKAGEDGH- 146

Query: 79  RPVPAVP-------LPGPAGRSGGPGA------WSAQKHGG--HLSGRAGGTGRKTEGLA 123
              P  P       + GP G  G PG          + H G   L G+ G  G K E  A
Sbjct: 147 ---PGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGA 203

Query: 124 RAPGGAPGHGLQGGQP 139
               G PG     G P
Sbjct: 204 PGENGTPGQTGARGLP 219



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 41/129 (31%), Positives = 51/129 (39%), Gaps = 14/129 (10%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG----KAPPGAAKSTSRVHCRAAE 74
           GPP  AG+       G    +  +  E  ++   PPG    K P G A +         +
Sbjct: 808 GPPGPAGKEGLRGPRGDQGPVG-RTGEVGAV--GPPGFAGEKGPSGEAGTAGPPGTPGPQ 864

Query: 75  GGGLRPVPAV-PLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARAPG--GAP 130
           G  L   P +  LPG  G  G PG   A    G L G AG  G R   G   +PG  GAP
Sbjct: 865 G--LLGAPGILGLPGSRGERGLPGVAGAVGEPGPL-GIAGPPGARGPPGAVGSPGVNGAP 921

Query: 131 GHGLQGGQP 139
           G   + G P
Sbjct: 922 GEAGRDGNP 930



 Score = 30.8 bits (68), Expect = 0.76
 Identities = 42/146 (28%), Positives = 45/146 (30%), Gaps = 31/146 (21%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-------- 55
           G R     P      G P   GRP E    G          + A   P  PG        
Sbjct: 130 GARGPAGPPGKAGEDGHPGKPGRPGERGVVGP---------QGARGFPGTPGLPGFKGIR 180

Query: 56  --------KAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGH 107
                   K  PGA            E G      A  LPG  GR G PG   A+   G 
Sbjct: 181 GHNGLDGLKGQPGAPGVKGEPGA-PGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGS 239

Query: 108 LSGRAGGTGRKTEGLARAPG--GAPG 131
           + G  G  G    G A  PG  GAPG
Sbjct: 240 V-GPVGPAG--PIGSAGPPGFPGAPG 262


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 45/145 (31%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAA 62
           G R     P     AGPP   G+P      G A +      +  +  P P G A PPG  
Sbjct: 800 GDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGA------KGDAGPPGPAGPAGPPGPI 853

Query: 63  KSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--HLSGRAGGTGRKTE 120
            +      + A G    P  A   PG AGR G PG        G    +G+ GG G + E
Sbjct: 854 GNVGAPGAKGARGSA-GPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE 912

Query: 121 -GLARAPG-----GAPGHGLQGGQP 139
            G A  PG     G PG   + G P
Sbjct: 913 TGPAGRPGEVGPPGPPGPAGEKGSP 937



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 9/136 (6%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAA 62
           G+      P +   +GP    G P     +G   +   K    A   P P G + PPG A
Sbjct: 404 GIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463

Query: 63  KSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122
               +   R A G    P P   LPGP G  GGPG+       G ++G  G  G +    
Sbjct: 464 GEEGK---RGARG---EPGPT-GLPGPPGERGGPGSRGFPGADG-VAGPKGPAGERGSPG 515

Query: 123 ARAPGGAPGHGLQGGQ 138
              P G+PG   + G+
Sbjct: 516 PAGPKGSPGEAGRPGE 531



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 45/138 (32%), Positives = 52/138 (37%), Gaps = 18/138 (13%)

Query: 19  GPPDGAGRPA---EHEATGGASSLHIKCMEAASLLPRPPGKA----PPGA---AKSTSRV 68
           GPP  AG P    E   +G A     +        P PPG A    PPGA     +    
Sbjct: 770 GPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEP 829

Query: 69  HCRAAEGGGLRPVPAVPL--PGPAGRSGGPGAWSAQKHGG-----HLSGRAGGTGRKTEG 121
               A+G    P PA P   PGP G  G PGA  A+   G        G AG  G     
Sbjct: 830 GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 889

Query: 122 LARAPGGAPG-HGLQGGQ 138
               P G PG  G +GG+
Sbjct: 890 GNAGPPGPPGPAGKEGGK 907



 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 43/142 (30%), Positives = 53/142 (37%), Gaps = 17/142 (11%)

Query: 12  PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPP-------GAAKS 64
           P      G P   GRP    A G A +        A+  P P G A P       GA   
Sbjct: 298 PGQMGPRGLPGERGRPG---APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGE 354

Query: 65  TSRVHCRAAEGG-GLRPVPAVPLP----GPAGRSGGPGAWSAQKHGGH--LSGRAGGTGR 117
                 R +EG  G+R  P  P P    GPAG  G  G   A+   G   ++G  G  G 
Sbjct: 355 AGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGA 414

Query: 118 KTEGLARAPGGAPGHGLQGGQP 139
           +     + PGG PG     G+P
Sbjct: 415 RGPSGPQGPGGPPGPKGNSGEP 436



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 45/151 (29%), Positives = 51/151 (33%), Gaps = 25/151 (16%)

Query: 4   GVRSLVSTPASWSAAGPPD---GAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA--- 57
           G +     P     AGPP      G P    A G A          A+    PPG +   
Sbjct: 833 GAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNA 892

Query: 58  ----PPGAAKSTSRVHCRAAEGGGLRPVPAVPL--PGPAGRSGGPGAWSAQKHGGHLSGR 111
               PPG A        R   G   RP    P   PGPAG  G PGA           G 
Sbjct: 893 GPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA----------DGP 942

Query: 112 AGGTGRK-TEGLARAPG--GAPGHGLQGGQP 139
           AG  G    +G+A   G  G PG   + G P
Sbjct: 943 AGAPGTPGPQGIAGQRGVVGLPGQRGERGFP 973



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 31/123 (25%), Positives = 39/123 (31%), Gaps = 7/123 (5%)

Query: 17   AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
            A GP    G P      G    + +         P  PG +     +  S         G
Sbjct: 939  ADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPG 998

Query: 77   GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQG 136
             + P      PG +GR G PGA  +        GR G  G K +     P G PG     
Sbjct: 999  PMGPPGLAGPPGESGREGAPGAEGS-------PGRDGSPGAKGDRGETGPAGPPGAPGAP 1051

Query: 137  GQP 139
            G P
Sbjct: 1052 GAP 1054



 Score = 36.2 bits (82), Expect = 0.018
 Identities = 41/139 (29%), Positives = 45/139 (32%), Gaps = 9/139 (6%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAA 62
           G R     P      GPP   G P      G       K        P P G K  PG A
Sbjct: 467 GKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEA 526

Query: 63  KSTSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGR 117
                     A+G     G   P      PGPAG+ G PG        G  +G  G  G 
Sbjct: 527 GRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQ-AGVMGFPGP 585

Query: 118 KTEGLARAPGGAPGHGLQG 136
           K  G A  PG A   G+ G
Sbjct: 586 K--GAAGEPGKAGERGVPG 602



 Score = 35.4 bits (80), Expect = 0.031
 Identities = 42/145 (28%), Positives = 49/145 (33%), Gaps = 29/145 (20%)

Query: 11  TPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA----------PPG 60
           +P      G P  AGRP E    G                  PPG A          PPG
Sbjct: 513 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPG 572

Query: 61  AAKSTSRVHCRAAEGG-------GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRA 112
           A      +     +G        G R VP  P   GPAG+ G  GA           G A
Sbjct: 573 ARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP-------PGPA 625

Query: 113 GGTGRKTEGLARAPGGAPG-HGLQG 136
           G  G + E   + P G+PG  GL G
Sbjct: 626 GPAGERGE---QGPAGSPGFQGLPG 647



 Score = 34.7 bits (78), Expect = 0.052
 Identities = 41/145 (28%), Positives = 46/145 (31%), Gaps = 24/145 (16%)

Query: 2   HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR--PPGKAPP 59
           H G   L         AGP    G P E+ A G              + PR  P  +  P
Sbjct: 267 HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG-------------QMGPRGLPGERGRP 313

Query: 60  GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119
           GA           A G    P P     GPAG  G PGA  A+   G    R     +  
Sbjct: 314 GAPGPAGARGNDGATGAAGPPGPT----GPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGV 369

Query: 120 EGLARAPGGAPGHGLQG-----GQP 139
            G    PG A   G  G     GQP
Sbjct: 370 RGEPGPPGPAGAAGPAGNPGADGQP 394



 Score = 33.9 bits (76), Expect = 0.089
 Identities = 42/137 (30%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR-PPGKAPPGAA 62
           G R L   P    A GP    G P E    G +  +           PR PPG  PPG  
Sbjct: 185 GPRGLPGPPG---APGPQGFQGPPGEPGEPGASGPMG----------PRGPPG--PPGKN 229

Query: 63  KSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122
                       G   RP    P PGP G  G PG        GH  G +G  G K +  
Sbjct: 230 GDDGEA------GKPGRPGERGP-PGPQGARGLPGTAGLPGMKGH-RGFSGLDGAKGDAG 281

Query: 123 ARAPGGAPGHGLQGGQP 139
              P G PG   + G P
Sbjct: 282 PAGPKGEPGSPGENGAP 298



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 40/146 (27%), Positives = 50/146 (34%), Gaps = 35/146 (23%)

Query: 18  AGPPDGAGRPAEH------EATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
           AGPP  AG+P E        A G + +   +       +  PPG A P  A         
Sbjct: 649 AGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGA 708

Query: 72  AAEGG-----------GLRPVP----AVPLPGPAGRSGGPGAWSAQKHGGH-----LSGR 111
             + G           GL+ +P    A  LPGP G  G  G   A    G      L+G 
Sbjct: 709 KGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGP 768

Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGG 137
            G  G         P GAPG   + G
Sbjct: 769 IGPPG---------PAGAPGDKGESG 785



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 40/140 (28%), Positives = 45/140 (32%), Gaps = 33/140 (23%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APP 59
           G +     P +  + G P   G P E  A G               LP P G      P 
Sbjct: 707 GAKGDAGAPGAPGSQGAPGLQGMPGERGAAG---------------LPGPKGDRGDAGPK 751

Query: 60  GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119
           GA  S  +   R   G      P  P PGPAG  G  G           SG AG TG + 
Sbjct: 752 GADGSPGKDGVRGLTG------PIGP-PGPAGAPGDKGESGP-------SGPAGPTGARG 797

Query: 120 EGLARAPGGAPGHGLQGGQP 139
               R   G PG     G P
Sbjct: 798 APGDRGEPGPPGPAGFAGPP 817



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 48/164 (29%), Positives = 55/164 (33%), Gaps = 41/164 (25%)

Query: 4   GVRSLVSTPASWSA---AGPPDGAG---RPAEHEATGGASSLHIKCMEAASLLPRPPGKA 57
           G + L  +P S       GPP  AG   RP      G      +            PGKA
Sbjct: 536 GAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKA 595

Query: 58  -------PPGAAKSTSRVHCRAAEGGGLRPVPAVP-----------------LPGPAGRS 93
                  PPGA     +     A+G    P PA P                 LPGPAG  
Sbjct: 596 GERGVPGPPGAVGPAGKDGEAGAQGP---PGPAGPAGERGEQGPAGSPGFQGLPGPAGPP 652

Query: 94  GGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG-HGLQG 136
           G  G    Q   G L G  G +G      AR   G PG  G+QG
Sbjct: 653 GEAGKPGEQGVPGDL-GAPGPSG------ARGERGFPGERGVQG 689



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 36/137 (26%), Positives = 47/137 (34%), Gaps = 42/137 (30%)

Query: 21  PDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRP 80
           PDG+  P + E TG               +  P G   P   +         A   G   
Sbjct: 96  PDGSESPTDQETTG---------------VEGPKGDTGPRGPRGP-------AGPPGRDG 133

Query: 81  VPAVP-LPGPAGRSGGPG--------------AWSAQKHGG-HLSGRAGGTGRKTEGLAR 124
           +P  P LPGP G  G PG               +  +  GG  + G  G +G +  GL  
Sbjct: 134 IPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPR--GLPG 191

Query: 125 APGGAPGHGLQG--GQP 139
            PG     G QG  G+P
Sbjct: 192 PPGAPGPQGFQGPPGEP 208



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 38/137 (27%), Positives = 43/137 (31%), Gaps = 11/137 (8%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPP--GA 61
            G   L   P      G P   G P    + G                P  PG   P   A
Sbjct: 1001 GPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPA 1060

Query: 62   AKSTSRVHCR-AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120
             KS  R     A   G + PV A    GP G  G  G    Q   G + G  G +G    
Sbjct: 1061 GKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRG-IKGHRGFSG---- 1115

Query: 121  GLARAPGGAPGH-GLQG 136
               + P G PG  G QG
Sbjct: 1116 --LQGPPGPPGSPGEQG 1130



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 31/102 (30%), Positives = 38/102 (37%), Gaps = 19/102 (18%)

Query: 2    HGGVRSLVSTPASWSAAGP--PDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPP 59
            H G   L   P    + G   P GA  PA      G++    K  +  + LP P G  PP
Sbjct: 1110 HRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGK--DGLNGLPGPIG--PP 1165

Query: 60   GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSA 101
            G          R  + G + P      PGP G  G PG  SA
Sbjct: 1166 GPRG-------RTGDAGPVGP------PGPPGPPGPPGPPSA 1194


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 44/124 (35%), Positives = 49/124 (39%), Gaps = 20/124 (16%)

Query: 19   GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKST-SRVHCRAAEGGG 77
            GPP   G P +    G   +L +K  E       PPG  PPG A S   R    AA   G
Sbjct: 1051 GPPGLRGFPGDRGLPGPVGALGLKGNEG------PPG--PPGPAGSPGERGPAGAAGPIG 1102

Query: 78   L--RPVPAVPLPGPAGRSGGPGAWSAQKHGGH--------LSGRAGGTGRKTEGLARAPG 127
            +  RP P  P PGPAG  G PG    Q   G         L G AG  G   E   +   
Sbjct: 1103 IPGRPGPQGP-PGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEI 1161

Query: 128  GAPG 131
            G PG
Sbjct: 1162 GEPG 1165



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 40/123 (32%), Positives = 47/123 (38%), Gaps = 14/123 (11%)

Query: 19   GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
            GPP  AG P E    G A  + I          RP  + PPG A        +  +G   
Sbjct: 1081 GPPGPAGSPGERGPAGAAGPIGIP--------GRPGPQGPPGPAGEKGAPGEKGPQGPAG 1132

Query: 79   RP--VPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQG 136
            R      V LPGPAG  G PG    +   G   G+ G  G K E   + P G  G     
Sbjct: 1133 RDGLQGPVGLPGPAGPVGPPGEDGDKGEIGE-PGQKGSKGDKGE---QGPPGPTGPQGPI 1188

Query: 137  GQP 139
            GQP
Sbjct: 1189 GQP 1191



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 37/122 (30%), Positives = 39/122 (31%), Gaps = 18/122 (14%)

Query: 19   GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-------PPGAAKSTSRVHCR 71
            G P  +G   E    G       K  E     P PPG         PPG    T  V   
Sbjct: 1189 GQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQM 1248

Query: 72   AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
               G           PGP G SG PGA   Q   G + G  G  G K E       G PG
Sbjct: 1249 GPPGP----------PGPRGPSGAPGADGPQGPPGGI-GNPGAVGEKGEPGEAGEPGLPG 1297

Query: 132  HG 133
             G
Sbjct: 1298 EG 1299



 Score = 35.4 bits (80), Expect = 0.031
 Identities = 47/159 (29%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-------KAPPGAAKS 64
            P S    GPP   G P      G +     K       L  PPG       +  PG   S
Sbjct: 1452 PGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGS 1511

Query: 65   TSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124
            +        E G   P   +  PGP G  G PG   A+       G +G TG K E    
Sbjct: 1512 SGP----KGEQGITGPSGPIGPPGPPGLPGPPGPKGAK-------GSSGPTGPKGEAGHP 1560

Query: 125  APGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLG 163
             P G PG   +  QP   +QA   R  + A Q L  G G
Sbjct: 1561 GPPGPPGPPGEVIQP-LPIQASRTRRNIDASQLLDDGNG 1598



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 34/126 (26%), Positives = 44/126 (34%), Gaps = 9/126 (7%)

Query: 18  AGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGG 77
           +GPP   G   E    G      +        L  P G   P      + +  +    G 
Sbjct: 651 SGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGN 710

Query: 78  LRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPG--GAPGHG 133
           + P      PGP G+ G PGA       G +   G  G  G+   GL   PG  G PGH 
Sbjct: 711 VGPQGE---PGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGK--PGLPGMPGADGPPGHP 765

Query: 134 LQGGQP 139
            + G P
Sbjct: 766 GKEGPP 771



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 43/152 (28%), Positives = 49/152 (32%), Gaps = 20/152 (13%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK------- 56
            G R     P +    GPP G G P      G         +      P P G+       
Sbjct: 1255 GPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGES 1314

Query: 57   APPGAAKSTSRVHCRAAEG--GGLRPV-----PAVP-LPGPAGRSGGPGAWSAQKHGGHL 108
             P GAA           +G  G   PV     P  P  PGPAG+ G PG        G  
Sbjct: 1315 GPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQ- 1373

Query: 109  SGRAGGTGRK----TEGLARAPGGAPGHGLQG 136
            +G  G TG        G    PG A   G QG
Sbjct: 1374 TGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQG 1405



 Score = 31.6 bits (70), Expect = 0.44
 Identities = 37/146 (25%), Positives = 47/146 (32%), Gaps = 23/146 (15%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAA 62
            G    +  P      GPP  AG        G         ++    LP P G   PPG  
Sbjct: 1096 GAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGED 1155

Query: 63   KSTSRVHCRAAEG-----------GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGR 111
                 +     +G           G   P   +  PGP+G  G PG            G+
Sbjct: 1156 GDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGP----------RGQ 1205

Query: 112  AGGTGRKTEGLARAPGGAPGH-GLQG 136
             G  G+K +   R   G PG  GLQG
Sbjct: 1206 QGLFGQKGDEGPRGFPGPPGPVGLQG 1231



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 29/91 (31%), Positives = 32/91 (35%), Gaps = 19/91 (20%)

Query: 53   PPGK-APPGAAKSTSRVHCRAAEG-----------GGLRPVPAVPLPGPAGRSGGPGAWS 100
            PPGK  PPG A    R   + A+G           G + P  A   PGP G  G PG   
Sbjct: 1388 PPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVG 1447

Query: 101  AQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
             Q       G  G  G         P G PG
Sbjct: 1448 EQ-------GLPGSPGPDGPPGPMGPPGLPG 1471



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 87  PGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARAPG--GAPGHGLQGGQ 138
           PGP G SGG G        G  +G  G TG    +G    PG  G PGH  Q G+
Sbjct: 930 PGPKGNSGGDGPAGPPGERGP-NGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGE 983


>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
           sapiens]
          Length = 940

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 22/125 (17%)

Query: 16  SAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEG 75
           S  GPP+G G P      GG                  P + P G   ++S        G
Sbjct: 730 SGGGPPNGRGGPGGGMVGGGG---------------HRPHEGPGGGMGNSSGHRPHEGPG 774

Query: 76  GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQ 135
           GG+      P  GP G  GG G    + H G   G +GG+G +       PGG  G G  
Sbjct: 775 GGMGSGHR-PHEGPGGSMGGGG--GHRPHEGPGGGISGGSGHRPH---EGPGGGMGAG-G 827

Query: 136 GGQPH 140
           G +PH
Sbjct: 828 GHRPH 832



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 71  RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAP 130
           R   GG   P P  P  G  G   G G  + +  GG   G  GG G +       PGG  
Sbjct: 707 RGGRGGNEPPPPPPPFRGARGGRSGGGPPNGR--GGPGGGMVGGGGHRPH---EGPGGGM 761

Query: 131 GHGLQGGQPH 140
           G+   G +PH
Sbjct: 762 GNS-SGHRPH 770


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 42/129 (32%), Positives = 50/129 (38%), Gaps = 14/129 (10%)

Query: 7   SLVSTPASWSAAGPP-DGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK--APPGAAK 63
           +++ TP    AA PP   A  P    A    ++       A + L RPPG    PP AA 
Sbjct: 236 TVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAP 295

Query: 64  STSRVHCRAAEGG--GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEG 121
           +       A  GG  G  P PA    GPAG SG PG  +A          A   G K E 
Sbjct: 296 AVPPP-AAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAA--------AAAPAPGVKAES 346

Query: 122 LARAPGGAP 130
             R    AP
Sbjct: 347 PKRVVQAAP 355



 Score = 35.0 bits (79), Expect = 0.040
 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 20  PPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLR 79
           PP    RP    + G  + +      AA+ +   P  AP G AK        A  G G  
Sbjct: 121 PPAAKLRPPPEGSAGSCAPV-----PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPG 175

Query: 80  PVPAVPLPGPA-GRSGGPGA 98
           P P  P PGP  G+  GPGA
Sbjct: 176 PGPG-PGPGPGPGKPAGPGA 194



 Score = 31.6 bits (70), Expect = 0.44
 Identities = 59/222 (26%), Positives = 77/222 (34%), Gaps = 45/222 (20%)

Query: 12  PASWSAAGPPDGAGRPAEHEAT----GGASSLHIKCMEA----------ASLLPRP---- 53
           P      GP  G G+PA   A     G A+ L+     A          A+LLP P    
Sbjct: 174 PGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAA 233

Query: 54  PG-----------KAPPG-AAKSTSRVHCRAAEGGGLRPVPAVP--LPGPAGRSGGP--G 97
           PG            APP  AA S       AA      P P  P  L  P G   GP   
Sbjct: 234 PGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTA 293

Query: 98  AWSAQKHGGHLSGRAGGTGRKTEGLARAPGGA---PGHGLQGGQPHCCLQADS-RRILLL 153
           A +        +G + G        A  P G    PG G     P   ++A+S +R++  
Sbjct: 294 APAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQA 353

Query: 154 AEQALR--AGLGARPSALDLVLSCAASVPFIHTALGRPRRCP 193
           A  A +  A  G   +A  +V+      P +  AL  P   P
Sbjct: 354 APPAAQTLAASGPASTAASMVIG-----PTMQGALPSPAAVP 390



 Score = 31.2 bits (69), Expect = 0.58
 Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 23/82 (28%)

Query: 52  RPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGR 111
           RPP   P G+A S + V   AA   G  P PA    GPA +  GP A         L+ R
Sbjct: 127 RPP---PEGSAGSCAPVPAAAAVAAGPEPAPA----GPA-KPAGPAA---------LAAR 169

Query: 112 AGGTGRKTEGLARAPGGAPGHG 133
           AG       G    PG  PG G
Sbjct: 170 AG------PGPGPGPGPGPGPG 185


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 34/115 (29%), Positives = 39/115 (33%), Gaps = 13/115 (11%)

Query: 17   AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
            AAGPP   G P E  A G      +            PG   P      S +     E G
Sbjct: 1239 AAGPPGKKGPPGEDGAKGSVGPTGL------------PGDLGPPGDPGVSGIDGSPGEKG 1286

Query: 77   GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
                V     PG +G  G PG    +   GH+ GR G  G K       P G PG
Sbjct: 1287 DPGDVGGPGPPGASGEPGAPGPPGKRGPSGHM-GREGREGEKGAKGEPGPDGPPG 1340



 Score = 35.8 bits (81), Expect = 0.023
 Identities = 42/147 (28%), Positives = 50/147 (34%), Gaps = 26/147 (17%)

Query: 11   TPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----------APPG 60
            +P      GP  G G P +  + G       K        P P GK           PPG
Sbjct: 1008 SPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPG 1067

Query: 61   AAKSTSRVHCRAAEG-----------GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--H 107
            AA  +     +   G           G   P     + GPAG  G PGA  AQ   G   
Sbjct: 1068 AAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPG 1127

Query: 108  LSGRAGGTG-RKTEGLARAPG--GAPG 131
            L G+ G  G R   G+   PG  G PG
Sbjct: 1128 LFGQKGDDGVRGFVGVIGPPGLQGLPG 1154



 Score = 34.7 bits (78), Expect = 0.052
 Identities = 32/121 (26%), Positives = 40/121 (33%), Gaps = 2/121 (1%)

Query: 19   GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
            GP    G P E    G A  + +     +     P GK      +       +    G L
Sbjct: 1001 GPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPL 1060

Query: 79   RPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG-HGLQGG 137
             P+      GP+G  G  G   A  H G   G  G  G   +   R P G PG  G  G 
Sbjct: 1061 GPLGPPGAAGPSGEEGDKGDVGAPGHKGS-KGDKGDAGPPGQPGIRGPAGHPGPPGADGA 1119

Query: 138  Q 138
            Q
Sbjct: 1120 Q 1120



 Score = 32.3 bits (72), Expect = 0.26
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 87  PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139
           PGP G +G PG      H G L G  G  G +     + P G PG   + G+P
Sbjct: 481 PGPVGLTGRPGPVGLPGHPG-LKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRP 532



 Score = 31.6 bits (70), Expect = 0.44
 Identities = 34/113 (30%), Positives = 39/113 (34%), Gaps = 16/113 (14%)

Query: 19   GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
            GPP  AG       TG    L  +          PPG   P   +    +  R    G L
Sbjct: 911  GPPGPAGVLGPQGKTGEVGPLGER---------GPPGPPGPPGEQGLPGLEGREGAKGEL 961

Query: 79   RPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
             P   +   GPAG  G PG       GG   G  G TG K +     P GA G
Sbjct: 962  GPPGPLGKEGPAGLRGFPG-----PKGG--PGDPGPTGLKGDKGPPGPVGANG 1007



 Score = 31.6 bits (70), Expect = 0.44
 Identities = 43/149 (28%), Positives = 51/149 (34%), Gaps = 36/149 (24%)

Query: 9    VSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRV 68
            V  P    A+G P   G P +   +G       +  + A   P P G  PPG    T  +
Sbjct: 1291 VGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDG--PPGR---TGPM 1345

Query: 69   HCRAAEGG----GLRPVPA-------------VPLPGPAGRSGGPGAWSAQKHGGHLSGR 111
              R   G     GLR +P              +  PGP G SG PG          L G 
Sbjct: 1346 GARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPG----------LKGD 1395

Query: 112  AGGTGRKTE----GLARAPGGAPGHGLQG 136
             G  G K      GL   PG A   G QG
Sbjct: 1396 TGPKGEKGHIGLIGLIGPPGEAGEKGDQG 1424



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 36/125 (28%), Positives = 39/125 (31%), Gaps = 24/125 (19%)

Query: 19   GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHCRAAEGGG 77
            GPP   G P      G    +  K     S    PPGK  PPG             E G 
Sbjct: 1214 GPPGAPGIP------GPKGDIGEKGDSGPSGAAGPPGKKGPPG-------------EDGA 1254

Query: 78   LRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPGGAPGHGLQ 135
               V    LPG  G  G PG        G     G  GG G    G +  PG     G +
Sbjct: 1255 KGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPG--PPGASGEPGAPGPPGKR 1312

Query: 136  GGQPH 140
            G   H
Sbjct: 1313 GPSGH 1317



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 53  PPGK-APPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGR 111
           PPG+  PPG   +         +G    P    P PG  G  G PG+     H GH  G 
Sbjct: 633 PPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGP-PGNPGIPGLPGSDGPLGHPGH-EGP 690

Query: 112 AGGTGRKTEGLARAPGGAPG-HGLQGGQPHCCLQAD 146
            G  G +    +  P G PG  G++G   +  LQ +
Sbjct: 691 TGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGE 726



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 35/118 (29%), Positives = 41/118 (34%), Gaps = 20/118 (16%)

Query: 19   GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
            GPP   G P E    G      ++  E A     PPG  P G             +GG  
Sbjct: 935  GPPGPPGPPGEQGLPG------LEGREGAKGELGPPG--PLGKEGPAGLRGFPGPKGGPG 986

Query: 79   RPVPA-----VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
             P P         PGP G +G PG        G L G AGG G   +  +  P G  G
Sbjct: 987  DPGPTGLKGDKGPPGPVGANGSPG------ERGPL-GPAGGIGLPGQSGSEGPVGPAG 1037



 Score = 27.7 bits (60), Expect = 6.4
 Identities = 34/125 (27%), Positives = 41/125 (32%), Gaps = 3/125 (2%)

Query: 16  SAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAAKSTSRVHCRAAE 74
           S  GPP   G        G      +K  E A     P G + P G      ++    A+
Sbjct: 476 SMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGAD 535

Query: 75  GGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGL 134
           G    P    P  G  G  G PG    +   G   G  G  G   E   R   G PG   
Sbjct: 536 GARGLPGDTGP-KGDRGFDGLPGLPGEKGQRGDF-GHVGQPGPPGEDGERGAEGPPGPTG 593

Query: 135 QGGQP 139
           Q G+P
Sbjct: 594 QAGEP 598



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 87  PGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRK-TEGLARAPG-----GAPGHGLQGGQ 138
           PG  G  G PGA       G +   G  G  G K   GL   PG     G PGH  + G+
Sbjct: 835 PGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGR 894

Query: 139 P 139
           P
Sbjct: 895 P 895


>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 46/144 (31%), Positives = 57/144 (39%), Gaps = 11/144 (7%)

Query: 2   HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61
           H G    +  PA  +A GPP  A R A   A              A+   R P  AP  A
Sbjct: 68  HPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSP--APGTA 125

Query: 62  AKSTSRVH----CRAAEGGGLRPVPAVPLPGP-AGRSGGPGAWSAQKHGGHLSGRAGGTG 116
             S + V       AA   G R VPA  LP P  G S G G+ + ++ G     R+  + 
Sbjct: 126 RGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSS 185

Query: 117 RKTEGLARAPG-GAPGHGLQGGQP 139
           R+    A  PG GAP  G  G  P
Sbjct: 186 RR---WAAMPGPGAPRPGAPGTWP 206


>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
          Length = 684

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 40/134 (29%), Positives = 48/134 (35%), Gaps = 20/134 (14%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G + L   P     +GPP G G       +G               LP PPG  PPG   
Sbjct: 115 GGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPG------------LPGPPG--PPGPPG 160

Query: 64  STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
               +     EG      P++  PGP G  G PG      + G   G  G  G K +   
Sbjct: 161 HPGVL----PEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGE-QGEVGKDGEKGDPGP 215

Query: 124 RAPGGAPGH-GLQG 136
             P G PG  GLQG
Sbjct: 216 PGPAGLPGSVGLQG 229



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 50  LPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--H 107
           +P  PGKA     +       R  +G   RP P    PG AG SG PG        G   
Sbjct: 257 IPGAPGKAGDRGERGPEGF--RGPKGDLGRPGPK-GTPGVAGPSGEPGMPGKDGQNGVPG 313

Query: 108 LSGRAGGTGRKTEGLARAPGGAPG 131
           L G+ G  GR      + P G PG
Sbjct: 314 LDGQKGEAGRNGAPGEKGPNGLPG 337



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 28/90 (31%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 50  LPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS 109
           LP PPG   P        +   A   G         LPGP G  G PG        G L 
Sbjct: 30  LPGPPGPPGPPGKPGQDGIDGEAGPPG---------LPGPPGPKGAPGKPGKPGEAG-LP 79

Query: 110 GRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139
           G  G  G         P GAPG     G P
Sbjct: 80  GLPGVDGLTGRDGPPGPKGAPGERGSLGPP 109



 Score = 30.4 bits (67), Expect = 0.99
 Identities = 31/88 (35%), Positives = 35/88 (39%), Gaps = 17/88 (19%)

Query: 50  LPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS 109
           LP  PG+A    +K       RA E G   P     +PG AG  G  G        GH  
Sbjct: 335 LPGLPGRA---GSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERG------EAGH-R 384

Query: 110 GRAGGTGRKTEGLARAPGGAPG-HGLQG 136
           G AG  G       + P GAPG  G QG
Sbjct: 385 GSAGALG------PQGPPGAPGVRGFQG 406



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 87  PGPAGRSGGPGAWSAQKHGGHL--------SGRAGGTGRKTEGLARAPGGAPGHGLQG 136
           PGPAG  G PG   +  H G          +G  G  G +     R   GA G GL G
Sbjct: 556 PGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDG 613


>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
           sapiens]
          Length = 1691

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 40/151 (26%), Positives = 52/151 (34%), Gaps = 28/151 (18%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAA 62
           GV  L +      A GP    G   + +   G +++    +     LP PPG   PP   
Sbjct: 386 GVPGLPALSGVPGALGPQGFPGLKGD-QGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPE 444

Query: 63  KSTSRVHCRAAEGGGLRPVPA----------------------VPLPGPAGRSGGPGAWS 100
             T  +H + +   GLR                          VP  GP G  G PG W 
Sbjct: 445 FETETLHNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPGPWG 504

Query: 101 AQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
                  L G  G  G +  G A+ P GAPG
Sbjct: 505 LI----GLPGLKGARGDRGSGGAQGPAGAPG 531



 Score = 35.0 bits (79), Expect = 0.040
 Identities = 42/150 (28%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKC-MEAASLLPRPPGKAPPGAA 62
            G R L   P S    GP   AG P E    G    + I       S L     K   G+A
Sbjct: 918  GTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSA 977

Query: 63   KSTSRVHCRAAEGGGLRP----VPAVP-----LPGPAGRSGGPGAWSAQKHGGHLSGRAG 113
             S      R  +G   RP    +P  P     + G +G+ G PG    +   G L G +G
Sbjct: 978  GSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPG-LKGSSG 1036

Query: 114  GTG-------RKTEGLARAPGGAPGHGLQG 136
             TG         ++G+  +PG     GL G
Sbjct: 1037 ITGFPGMPGESGSQGIRGSPGLPGASGLPG 1066



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 39/137 (28%), Positives = 43/137 (31%), Gaps = 8/137 (5%)

Query: 8    LVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSR 67
            L   P     AG     G P      G    L    +      P  PG         T  
Sbjct: 1125 LPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKG 1184

Query: 68   VHCRAAEGGGLRPVPA-VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARA 125
             H     G  +  VP    LPGP G  G PG          L G+ G  G    +G A  
Sbjct: 1185 TH--GTPGPSITGVPGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGL 1242

Query: 126  PGGAPGHGLQ---GGQP 139
            P GAPG  L     GQP
Sbjct: 1243 P-GAPGISLPSLIAGQP 1258



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 40/146 (27%), Positives = 49/146 (33%), Gaps = 33/146 (22%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATG--GASSLH-----IKCMEAASLLPRPPGK 56
            G    + TP      GPP   G P      G  G+S L          EA  + P P G 
Sbjct: 1328 GEPGFMGTPGK---VGPPGDPGFPGMKGKAGPRGSSGLQGDPGQTPTAEAVQVPPGPLGL 1384

Query: 57   APPGAAKSTSRVHCRAAEGG----GLRPVPAVP-------LPGPAGRSGGPGAWSAQKHG 105
              PG            A+G     G + +P +P       LPGP G  G PG        
Sbjct: 1385 --PGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPG-------- 1434

Query: 106  GHLSGRAGGTGRKTEGLARAPGGAPG 131
              L G  G  G +     + P G PG
Sbjct: 1435 --LPGLQGPPGFEGAPGQQGPFGMPG 1458



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 87   PGPAGRSGGPGAWSAQKHGGH--LSGRAGGTGRKTEGLARAPGGAPGH-GLQG--GQP 139
            PGPAG  G PG  S Q   G     G  G  G K +       G PG  GL+G  G+P
Sbjct: 1273 PGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGEP 1330


>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
           sapiens]
          Length = 1690

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 40/151 (26%), Positives = 52/151 (34%), Gaps = 28/151 (18%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAA 62
           GV  L +      A GP    G   + +   G +++    +     LP PPG   PP   
Sbjct: 385 GVPGLPALSGVPGALGPQGFPGLKGD-QGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPE 443

Query: 63  KSTSRVHCRAAEGGGLRPVPA----------------------VPLPGPAGRSGGPGAWS 100
             T  +H + +   GLR                          VP  GP G  G PG W 
Sbjct: 444 FETETLHNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPGPWG 503

Query: 101 AQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
                  L G  G  G +  G A+ P GAPG
Sbjct: 504 LI----GLPGLKGARGDRGSGGAQGPAGAPG 530



 Score = 35.0 bits (79), Expect = 0.040
 Identities = 42/150 (28%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKC-MEAASLLPRPPGKAPPGAA 62
            G R L   P S    GP   AG P E    G    + I       S L     K   G+A
Sbjct: 917  GTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSA 976

Query: 63   KSTSRVHCRAAEGGGLRP----VPAVP-----LPGPAGRSGGPGAWSAQKHGGHLSGRAG 113
             S      R  +G   RP    +P  P     + G +G+ G PG    +   G L G +G
Sbjct: 977  GSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPG-LKGSSG 1035

Query: 114  GTG-------RKTEGLARAPGGAPGHGLQG 136
             TG         ++G+  +PG     GL G
Sbjct: 1036 ITGFPGMPGESGSQGIRGSPGLPGASGLPG 1065



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 39/137 (28%), Positives = 43/137 (31%), Gaps = 8/137 (5%)

Query: 8    LVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSR 67
            L   P     AG     G P      G    L    +      P  PG         T  
Sbjct: 1124 LPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKG 1183

Query: 68   VHCRAAEGGGLRPVPA-VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARA 125
             H     G  +  VP    LPGP G  G PG          L G+ G  G    +G A  
Sbjct: 1184 TH--GTPGPSITGVPGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGL 1241

Query: 126  PGGAPGHGLQ---GGQP 139
            P GAPG  L     GQP
Sbjct: 1242 P-GAPGISLPSLIAGQP 1257



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 40/146 (27%), Positives = 49/146 (33%), Gaps = 33/146 (22%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATG--GASSLH-----IKCMEAASLLPRPPGK 56
            G    + TP      GPP   G P      G  G+S L          EA  + P P G 
Sbjct: 1327 GEPGFMGTPGK---VGPPGDPGFPGMKGKAGPRGSSGLQGDPGQTPTAEAVQVPPGPLGL 1383

Query: 57   APPGAAKSTSRVHCRAAEGG----GLRPVPAVP-------LPGPAGRSGGPGAWSAQKHG 105
              PG            A+G     G + +P +P       LPGP G  G PG        
Sbjct: 1384 --PGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPG-------- 1433

Query: 106  GHLSGRAGGTGRKTEGLARAPGGAPG 131
              L G  G  G +     + P G PG
Sbjct: 1434 --LPGLQGPPGFEGAPGQQGPFGMPG 1457



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 87   PGPAGRSGGPGAWSAQKHGGH--LSGRAGGTGRKTEGLARAPGGAPGH-GLQG--GQP 139
            PGPAG  G PG  S Q   G     G  G  G K +       G PG  GL+G  G+P
Sbjct: 1272 PGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGEP 1329


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 24/141 (17%)

Query: 19   GPPDGAGRPAEHEAT------GGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHCR 71
            GPP   G    H+        G      ++ +      P PPG    PG      R    
Sbjct: 867  GPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVN 926

Query: 72   AAEGGGLRPVPAVP-------------LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118
            +++  G   +P VP              PGP GR G PG  + QK  G L G AG  G K
Sbjct: 927  SSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGR-TGQK--GSL-GEAGAPGHK 982

Query: 119  TEGLARAPGGAPGHGLQGGQP 139
                A  P GA G     G P
Sbjct: 983  GSKGAPGPAGARGESGLAGAP 1003



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%)

Query: 50  LPRPPGKA-PPGAA--KSTSRVHCRAAE----GGGLRPVPAVP-LPGPAGRSGGPGAWSA 101
           +P PPG+A PPG+        + C  +     G  L+ VP     PGP GR G PG    
Sbjct: 762 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGE 821

Query: 102 QKHGGHLSGRAGGTGRKTEGLARAPG--------GAPGHGLQG 136
               G   G+ G TG   +G    PG        G PG G +G
Sbjct: 822 PGDPGE-DGKPGDTG--PQGFPGTPGDVGPKGDKGDPGVGERG 861



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 4/118 (3%)

Query: 22   DGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPV 81
            DG G+P      G    +     +  S+L  P  +  PG A         A   G L   
Sbjct: 1110 DGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGP----AGPKGNLGSK 1165

Query: 82   PAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139
                 PGP G  G PG+  +   G     + G  G         P G PG+  + G P
Sbjct: 1166 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFP 1223



 Score = 27.7 bits (60), Expect = 6.4
 Identities = 33/131 (25%), Positives = 42/131 (32%), Gaps = 17/131 (12%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
            PA   A G P   G P  +   G    +           P  PG+      K        
Sbjct: 1193 PAQKGAKGEPGFRGPPGPYGRPGYKGEIGF---------PGRPGRPGMNGLKGEKGEPGD 1243

Query: 72   AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL---SGRAGGTGRKTEGLARAPGG 128
            A+ G G+R      +PGP G  G PG      +  ++   S R G  G         P G
Sbjct: 1244 ASLGFGMRG-----MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKG 1298

Query: 129  APGHGLQGGQP 139
            A G     G P
Sbjct: 1299 AKGEVGPPGPP 1309


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 24/141 (17%)

Query: 19  GPPDGAGRPAEHEAT------GGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHCR 71
           GPP   G    H+        G      ++ +      P PPG    PG      R    
Sbjct: 452 GPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVN 511

Query: 72  AAEGGGLRPVPAVP-------------LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118
           +++  G   +P VP              PGP GR G PG  + QK  G L G AG  G K
Sbjct: 512 SSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGR-TGQK--GSL-GEAGAPGHK 567

Query: 119 TEGLARAPGGAPGHGLQGGQP 139
               A  P GA G     G P
Sbjct: 568 GSKGAPGPAGARGESGLAGAP 588



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%)

Query: 50  LPRPPGKA-PPGAA--KSTSRVHCRAAE----GGGLRPVPAVP-LPGPAGRSGGPGAWSA 101
           +P PPG+A PPG+        + C  +     G  L+ VP     PGP GR G PG    
Sbjct: 347 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGE 406

Query: 102 QKHGGHLSGRAGGTGRKTEGLARAPG--------GAPGHGLQG 136
               G   G+ G TG   +G    PG        G PG G +G
Sbjct: 407 PGDPGE-DGKPGDTG--PQGFPGTPGDVGPKGDKGDPGVGERG 446



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 4/118 (3%)

Query: 22  DGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPV 81
           DG G+P      G    +     +  S+L  P  +  PG A         A   G L   
Sbjct: 695 DGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGP----AGPKGNLGSK 750

Query: 82  PAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139
                PGP G  G PG+  +   G     + G  G         P G PG+  + G P
Sbjct: 751 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFP 808



 Score = 27.7 bits (60), Expect = 6.4
 Identities = 33/131 (25%), Positives = 42/131 (32%), Gaps = 17/131 (12%)

Query: 12  PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
           PA   A G P   G P  +   G    +           P  PG+      K        
Sbjct: 778 PAQKGAKGEPGFRGPPGPYGRPGYKGEIGF---------PGRPGRPGMNGLKGEKGEPGD 828

Query: 72  AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL---SGRAGGTGRKTEGLARAPGG 128
           A+ G G+R      +PGP G  G PG      +  ++   S R G  G         P G
Sbjct: 829 ASLGFGMRG-----MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKG 883

Query: 129 APGHGLQGGQP 139
           A G     G P
Sbjct: 884 AKGEVGPPGPP 894


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1516

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 24/141 (17%)

Query: 19  GPPDGAGRPAEHEAT------GGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHCR 71
           GPP   G    H+        G      ++ +      P PPG    PG      R    
Sbjct: 632 GPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVN 691

Query: 72  AAEGGGLRPVPAVP-------------LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118
           +++  G   +P VP              PGP GR G PG  + QK  G L G AG  G K
Sbjct: 692 SSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGR-TGQK--GSL-GEAGAPGHK 747

Query: 119 TEGLARAPGGAPGHGLQGGQP 139
               A  P GA G     G P
Sbjct: 748 GSKGAPGPAGARGESGLAGAP 768



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%)

Query: 50  LPRPPGKA-PPGAA--KSTSRVHCRAAE----GGGLRPVPAVP-LPGPAGRSGGPGAWSA 101
           +P PPG+A PPG+        + C  +     G  L+ VP     PGP GR G PG    
Sbjct: 527 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGE 586

Query: 102 QKHGGHLSGRAGGTGRKTEGLARAPG--------GAPGHGLQG 136
               G   G+ G TG   +G    PG        G PG G +G
Sbjct: 587 PGDPGE-DGKPGDTG--PQGFPGTPGDVGPKGDKGDPGVGERG 626



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 4/118 (3%)

Query: 22  DGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPV 81
           DG G+P      G    +     +  S+L  P  +  PG A         A   G L   
Sbjct: 875 DGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGP----AGPKGNLGSK 930

Query: 82  PAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139
                PGP G  G PG+  +   G     + G  G         P G PG+  + G P
Sbjct: 931 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFP 988



 Score = 27.7 bits (60), Expect = 6.4
 Identities = 33/131 (25%), Positives = 42/131 (32%), Gaps = 17/131 (12%)

Query: 12   PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
            PA   A G P   G P  +   G    +           P  PG+      K        
Sbjct: 958  PAQKGAKGEPGFRGPPGPYGRPGYKGEIGF---------PGRPGRPGMNGLKGEKGEPGD 1008

Query: 72   AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL---SGRAGGTGRKTEGLARAPGG 128
            A+ G G+R      +PGP G  G PG      +  ++   S R G  G         P G
Sbjct: 1009 ASLGFGMRG-----MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKG 1063

Query: 129  APGHGLQGGQP 139
            A G     G P
Sbjct: 1064 AKGEVGPPGPP 1074


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 37/124 (29%), Positives = 40/124 (32%), Gaps = 22/124 (17%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
           GPP G G P     TG                P PPG  P G      +       G   
Sbjct: 586 GPPGGVGFPGSRGDTGP---------------PGPPGYGPAGPIGDKGQAGFPGGPGSPG 630

Query: 79  RPVPA------VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGH 132
            P P       VPLPGP G  G PG+       G   G  G  GR      +   G PG 
Sbjct: 631 LPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGD-RGFPGTPGRPGLPGEKGAVGQPGI 689

Query: 133 GLQG 136
           G  G
Sbjct: 690 GFPG 693



 Score = 37.4 bits (85), Expect = 0.008
 Identities = 33/94 (35%), Positives = 38/94 (40%), Gaps = 17/94 (18%)

Query: 51  PRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSG 110
           P PPG   PG A +      R  +G   R  P   LPGP+GR G PG            G
Sbjct: 370 PGPPGLPVPGQAGAPGFPGERGEKGD--RGFPGTSLPGPSGRDGLPGP----------PG 417

Query: 111 RAGGTGRK--TEGLARAPGGAPG-HGLQG--GQP 139
             G  G+   T G+     G PG  G  G  GQP
Sbjct: 418 SPGPPGQPGYTNGIVECQPGPPGDQGPPGIPGQP 451



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 40/144 (27%), Positives = 52/144 (36%), Gaps = 15/144 (10%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-------K 56
           G++ ++  P      GP    G+  +    G   +   +    AS  P  PG        
Sbjct: 55  GLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQD 114

Query: 57  APPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
            PPG         C   +G    P+    LPG AG  G PG    +   G + G   G  
Sbjct: 115 GPPGPPGIPG---CNGTKGER-GPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGML 170

Query: 117 RKTE-GLARAPG--GAPG-HGLQG 136
            K E G    PG  G PG  GLQG
Sbjct: 171 LKGERGFPGIPGTPGPPGLPGLQG 194



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 43/149 (28%), Positives = 48/149 (32%), Gaps = 47/149 (31%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
           G+  +  TP    + G P   G P EH A G      I+        P PPG   PG+  
Sbjct: 746 GLPGIPGTPGEKGSIGVP---GVPGEHGAIGPPGLQGIRGE------PGPPGL--PGSVG 794

Query: 64  STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
           S                 P VP  GP G  G PG          LSG  G  G K  G  
Sbjct: 795 S-----------------PGVPGIGPPGARGPPGGQGPP----GLSGPPGIKGEK--GFP 831

Query: 124 RAPG-------------GAPGHGLQGGQP 139
             PG             G PG   Q G P
Sbjct: 832 GFPGLDMPGPKGDKGAQGLPGITGQSGLP 860



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 37/145 (25%), Positives = 47/145 (32%), Gaps = 26/145 (17%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
            GV+     P +    GP    G P      G A              P  PG+  PG   
Sbjct: 1130 GVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGE---------PGLPGRGFPGFPG 1180

Query: 64   STSRVHCRAAEG-GGLRPVPAVP----------LPGPAGRSGGPGAWSAQKHGGHLSGRA 112
            +      +   G  GL   P +P           PGP G+ G PG+      G    G  
Sbjct: 1181 AKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGS-----PGHATEGPK 1235

Query: 113  GGTGRKTE-GLARAPGGAPGHGLQG 136
            G  G + + GL   PG     GL G
Sbjct: 1236 GDRGPQGQPGLPGLPGPMGPPGLPG 1260



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 39/147 (26%), Positives = 47/147 (31%), Gaps = 24/147 (16%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK------- 56
           G++  V  P      GPP   G P E +   G S    K  +    +  PPG        
Sbjct: 191 GLQGPVGPPGFTGPPGPPGPPGPPGE-KGQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQ 249

Query: 57  -----APPGAAKSTSRVHCRAAEGGGLRPVPAVPLP-------GPAGRSGGPGAWSAQKH 104
                A  G          +   G G +  P  P P       G  G  G PG      +
Sbjct: 250 EKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGY 309

Query: 105 GGHLSGRAGGTGRKTEGLARAPGGAPG 131
            G L GR G  G K E     P G PG
Sbjct: 310 PG-LIGRQGPQGEKGEA---GPPGPPG 332



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 33/100 (33%), Positives = 37/100 (37%), Gaps = 20/100 (20%)

Query: 53  PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGHLSGR 111
           PPG  PPG    T  +  +     G R  P  P P G  G  G PG          L G+
Sbjct: 327 PPG--PPGIVIGTGPLGEK-----GERGYPGTPGPRGEPGPKGFPG----------LPGQ 369

Query: 112 AGGTGRKTEGLARAPGGAPGHGLQG--GQPHCCLQADSRR 149
            G  G    G A APG     G +G  G P   L   S R
Sbjct: 370 PGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGR 409



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 41/147 (27%), Positives = 52/147 (35%), Gaps = 29/147 (19%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLL-------PRPPG-KAPPGAAKSTSRVHC 70
           GPP   G P      G    +  K  +  S L         PPG + PPG      +   
Sbjct: 437 GPPGDQGPPGIPGQPGFIGEIGEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPGA 496

Query: 71  RAAEG-GGLRPVPAVPLP-GPAGRSGGPGA--------WSAQKHGGH----------LSG 110
           +   G  G   V  VP P G  G  G PGA        +  +  G            ++G
Sbjct: 497 KGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKGDKGDPGFPGQPGMTG 556

Query: 111 RAGGTGRKTEGLARAPGGAPGH-GLQG 136
           RAG  GR        P G+PG  GL+G
Sbjct: 557 RAGSPGRDGHPGLPGPKGSPGSVGLKG 583



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 36/137 (26%), Positives = 44/137 (32%), Gaps = 25/137 (18%)

Query: 9    VSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-PGAAKSTSR 67
            +  P      G    AG P      G   S+ I  M  +  L   PG    PG+      
Sbjct: 1057 IGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGE 1116

Query: 68   VHCRAAEG-------GGLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119
               +   G        G   +P  P P GPAG+ G PG+           G  G  G K 
Sbjct: 1117 KGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGS----------DGIPGSAGEKG 1166

Query: 120  EGLARAPGGAPGHGLQG 136
            E       G PG G  G
Sbjct: 1167 E------PGLPGRGFPG 1177


>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
          Length = 1073

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 12/140 (8%)

Query: 2    HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61
            H G+      P      GPP   G+P      G + S+          L +         
Sbjct: 871  HTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYL 930

Query: 62   AKSTSRVHCRAAEGGGLRPVPAVP-----LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
                   + ++++G   RP P  P     LPG AG  G PG    +   G L G +G  G
Sbjct: 931  LAQMPPAYMKSSQG---RPGPPGPPGKDGLPGRAGPMGEPG----RPGQGGLEGPSGPIG 983

Query: 117  RKTEGLARAPGGAPGHGLQG 136
             K E  A+   GAPG GL+G
Sbjct: 984  PKGERGAKGDPGAPGVGLRG 1003



 Score = 33.9 bits (76), Expect = 0.089
 Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 10/130 (7%)

Query: 19  GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR---PPGK-APPGAAKSTSRVHCRAAE 74
           GPP  AG        G    +  K  +    +P    PPG   PPGA            +
Sbjct: 606 GPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQ 665

Query: 75  GGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS-----GRAGGTGRKTEGLARAPGGA 129
           G   +  P  P  GP+G  G PG    +   G        G+AG  G      AR P G 
Sbjct: 666 GSPGKEGPPGP-QGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGF 724

Query: 130 PGHGLQGGQP 139
            GH    G P
Sbjct: 725 KGHTGDSGAP 734



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 42/144 (29%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR-PPGKAPPGAA 62
           G R       S  + G P  +G P +  + G   S  +       L PR PPG+      
Sbjct: 768 GPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLP----GFLGPRGPPGEPGEKGV 823

Query: 63  KSTSRVHCRAAEGG--GLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119
                V  +  E G  G R  P +    GP G  G PG      H GH +G  G  G   
Sbjct: 824 PGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGH-TGLMGPQGLPG 882

Query: 120 EGLARAPGGAPGH----GLQGGQP 139
           E     P G PG     GL+G  P
Sbjct: 883 ENGPVGPPGPPGQPGFPGLRGESP 906



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 40/131 (30%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 17  AAGPPDGAGRPAEHEATG--GASSLH----IKCMEAASLLPRPPGKAPPGAAKSTSRVHC 70
           AAGPP   G P +    G  G S L      +  E     P PPG+  PG A        
Sbjct: 658 AAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGE--PGKAGEPGLPGP 715

Query: 71  RAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGG 128
             A G  G          PGP G SG  G    +     L G+ G TG       + P G
Sbjct: 716 EGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEG----LPGKDGDTGPTGPQGPQGPRG 771

Query: 129 APGHGLQGGQP 139
            PG     G P
Sbjct: 772 PPGKNGSPGSP 782



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 44/142 (30%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPA---EHEATGGASSLHIKCMEAASLLPRPPGKA-PP 59
           G + L   P     AG P   G P    E    G    L +  ++         G A PP
Sbjct: 271 GEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPP 330

Query: 60  GAAKSTSRV--HCRAAEGGGLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
           G   +TS    H R     G +     P LPG  G  G PG    Q       G  G  G
Sbjct: 331 GLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQ-------GPTGPPG 383

Query: 117 RK-TEGLARAPG-----GAPGH 132
            K  EG   APG     GAPGH
Sbjct: 384 AKGQEGAHGAPGAAGNPGAPGH 405



 Score = 31.2 bits (69), Expect = 0.58
 Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 53  PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRA 112
           P G   P  AK     H      G       V  PGP+G  G  GA         L G  
Sbjct: 375 PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGA-------PGLRGTP 427

Query: 113 GGTGRKTEGLARAPGGAPGHGLQGGQP 139
           G  G + E  A    G+PG     G P
Sbjct: 428 GKDGERGEKGAAGEEGSPGPVGPRGDP 454



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 37/139 (26%), Positives = 41/139 (29%), Gaps = 21/139 (15%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP----- 58
           G   L  TP      G    AG        G            A  LP PPGK       
Sbjct: 419 GAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGD------PGAPGLPGPPGKGKDGEPG 472

Query: 59  ----PGAAKSTSRVHCRAAEG----GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--HL 108
               PG          R A G     G R  P + + GP G SG PG   +    G    
Sbjct: 473 LRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGF 532

Query: 109 SGRAGGTGRKTEGLARAPG 127
            G  G  GR       +PG
Sbjct: 533 PGPQGPAGRDGLSSLLSPG 551



 Score = 27.7 bits (60), Expect = 6.4
 Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 88  GPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-GLARAPG--GAPGH-GLQG 136
           GPAG  G PG  S       + G  G  G K + GL   PG  G PG  G QG
Sbjct: 325 GPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQG 377


>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
          Length = 1142

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 40/138 (28%), Positives = 49/138 (35%), Gaps = 19/138 (13%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASL----LPRPPGKA-P 58
           G++    +  S    GPP   G P EH   G       K      +    LP P G+A P
Sbjct: 522 GLKGQQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGDPGGIIGPPGLPGPKGEAGP 581

Query: 59  PGAAKSTSRVHCRAAEGGGLRPVPAVPLP-GPAGRSGGPGAWSAQ----KHGGHLSGRAG 113
           PG +              GL   P  P P GP G  G PG   +       G  + GR G
Sbjct: 582 PGKSLPGE---------PGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTG 632

Query: 114 GTGRKTEGLARAPGGAPG 131
             G   E   + P G PG
Sbjct: 633 AQGPAGEPGIQGPRGLPG 650



 Score = 37.7 bits (86), Expect = 0.006
 Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 19/125 (15%)

Query: 10  STPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVH 69
           S P   S  G   GAG P ++++      +  +        P  PG+  P  +K      
Sbjct: 702 SVPGLKSNKGEEGGAGEPGKYDSMARKGDIGPRGP------PGIPGREGPKGSKGERGYP 755

Query: 70  CRAAEGG--GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAP 126
               E G  GL+ +P +P  PGP G  G  G           +G  G TG K E  +  P
Sbjct: 756 GIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGR----------TGHPGPTGAKGEKGSDGP 805

Query: 127 GGAPG 131
            G PG
Sbjct: 806 PGKPG 810



 Score = 35.8 bits (81), Expect = 0.023
 Identities = 42/146 (28%), Positives = 57/146 (39%), Gaps = 17/146 (11%)

Query: 5   VRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAAK 63
           ++  V+ P+     GPP   G P      G   ++ +  +E    +    G A PPG A 
Sbjct: 831 IKGGVNVPSYPGPPGPPGPKGDPGP---VGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAG 887

Query: 64  STSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--HLSGRAGGTG 116
            + +       G     G   PV  +  PGP G SG PG        G   + G+ G  G
Sbjct: 888 MSGKPGAPGPPGVPGEPGERGPVGDIGFPGPEGPSGKPGINGKDGIPGAQGIMGKPGDRG 947

Query: 117 RKTEGLARAPGGAPG-HGLQG--GQP 139
            K E   R   G PG  G QG  G+P
Sbjct: 948 PKGE---RGDQGIPGDRGSQGERGKP 970



 Score = 30.4 bits (67), Expect = 0.99
 Identities = 46/158 (29%), Positives = 52/158 (32%), Gaps = 35/158 (22%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCM---EAASL--------LPR 52
           G R     P      GPP   G    H+  GG  +   K     EA  L        LP 
Sbjct: 409 GRRGKTGPPGKPGPPGPPGPPGIQGIHQTLGGYYNKDNKGNDEHEAGGLKGDKGETGLPG 468

Query: 53  PPGKAPPGAAKSTSRVHCRAAEGG--------GLRPVPAVPL-PGPAGRSGGPGAWSAQK 103
            PG   P   K          E G        G + V   P  PGP G  G PG      
Sbjct: 469 FPGSVGPKGQKGEPGEPFTKGEKGDRGEPGVIGSQGVKGEPGDPGPPGLIGSPG------ 522

Query: 104 HGGHLSGRAGGTGRKTEGLARAPG--GAPG-HGLQGGQ 138
               L G+ G  G  + G    PG  G PG HG+ G Q
Sbjct: 523 ----LKGQQGSAG--SMGPRGPPGDVGLPGEHGIPGKQ 554


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 12/140 (8%)

Query: 2    HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61
            H G+      P      GPP   G+P      G + S+          L +         
Sbjct: 1424 HTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYL 1483

Query: 62   AKSTSRVHCRAAEGGGLRPVPAVP-----LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
                   + ++++G   RP P  P     LPG AG  G PG    +   G L G +G  G
Sbjct: 1484 LAQMPPAYMKSSQG---RPGPPGPPGKDGLPGRAGPMGEPG----RPGQGGLEGPSGPIG 1536

Query: 117  RKTEGLARAPGGAPGHGLQG 136
             K E  A+   GAPG GL+G
Sbjct: 1537 PKGERGAKGDPGAPGVGLRG 1556



 Score = 36.6 bits (83), Expect = 0.014
 Identities = 41/133 (30%), Positives = 51/133 (38%), Gaps = 25/133 (18%)

Query: 19  GPP--DGA----GRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAAKSTSRVHCR 71
           GPP  DG+    G P E    G    + ++  +    LP PPG+   PG          R
Sbjct: 539 GPPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGTR 598

Query: 72  AAEGG-GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAP 130
             +G  GL   P  P  G  G+ G PG           SG AG  G K +     P G P
Sbjct: 599 GEKGERGLDGFPGKP--GDTGQQGRPGP----------SGVAGPQGEKGDVGPAGPPGVP 646

Query: 131 G-----HGLQGGQ 138
           G      GL+G Q
Sbjct: 647 GSVVQQEGLKGEQ 659



 Score = 33.9 bits (76), Expect = 0.089
 Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 10/130 (7%)

Query: 19   GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR---PPGK-APPGAAKSTSRVHCRAAE 74
            GPP  AG        G    +  K  +    +P    PPG   PPGA            +
Sbjct: 1159 GPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQ 1218

Query: 75   GGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS-----GRAGGTGRKTEGLARAPGGA 129
            G   +  P  P  GP+G  G PG    +   G        G+AG  G      AR P G 
Sbjct: 1219 GSPGKEGPPGP-QGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGF 1277

Query: 130  PGHGLQGGQP 139
             GH    G P
Sbjct: 1278 KGHTGDSGAP 1287



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 42/144 (29%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR-PPGKAPPGAA 62
            G R       S  + G P  +G P +  + G   S  +       L PR PPG+      
Sbjct: 1321 GPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLP----GFLGPRGPPGEPGEKGV 1376

Query: 63   KSTSRVHCRAAEGG--GLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119
                 V  +  E G  G R  P +    GP G  G PG      H GH +G  G  G   
Sbjct: 1377 PGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGH-TGLMGPQGLPG 1435

Query: 120  EGLARAPGGAPGH----GLQGGQP 139
            E     P G PG     GL+G  P
Sbjct: 1436 ENGPVGPPGPPGQPGFPGLRGESP 1459



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 35/126 (27%), Positives = 42/126 (33%), Gaps = 6/126 (4%)

Query: 19   GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
            GPP   G+   H A G A +        A     PPG       + T        E G  
Sbjct: 898  GPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAA 957

Query: 79   RPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARAPGGAPGHGLQGG 137
                +   PGP G  G PGA       G   G+ G  G R + GL    G     G   G
Sbjct: 958  GEEGS---PGPVGPRGDPGAPGLPGPPG--KGKDGEPGLRGSPGLPGPLGTKAACGKVRG 1012

Query: 138  QPHCCL 143
              +C L
Sbjct: 1013 SENCAL 1018



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 40/131 (30%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 17   AAGPPDGAGRPAEHEATG--GASSLH----IKCMEAASLLPRPPGKAPPGAAKSTSRVHC 70
            AAGPP   G P +    G  G S L      +  E     P PPG+  PG A        
Sbjct: 1211 AAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGE--PGKAGEPGLPGP 1268

Query: 71   RAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGG 128
              A G  G          PGP G SG  G    +     L G+ G TG       + P G
Sbjct: 1269 EGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEG----LPGKDGDTGPTGPQGPQGPRG 1324

Query: 129  APGHGLQGGQP 139
             PG     G P
Sbjct: 1325 PPGKNGSPGSP 1335



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 12/98 (12%)

Query: 51  PRPPGKAP-PGAAK----STSRVHCRAAEGGGLRPVPAVPLPGPAGRSG--GP-GAWSAQ 102
           P PP + P PG+ +     T    C A E G +     + LPGP G  G  GP GA   +
Sbjct: 454 PPPPQRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGPKGDIGAIGPVGAPGPK 513

Query: 103 KHGGHLSGRAGGTGRKTE----GLARAPGGAPGHGLQG 136
              G +     G G K E    GL   PG     G++G
Sbjct: 514 GEKGDVGIGPFGQGEKGEKGSLGLPGPPGRDGSKGMRG 551



 Score = 32.3 bits (72), Expect = 0.26
 Identities = 43/131 (32%), Positives = 49/131 (37%), Gaps = 19/131 (14%)

Query: 17  AAGPPDGAGRPAEHEATGGASSLHIKCMEAASL-LPRPPGKAPPGAAKSTSRVHCRAAEG 75
           A GP    G   E    G       +  E  SL LP PPG+     +K          E 
Sbjct: 503 AIGPVGAPGPKGEKGDVGIGPFGQGEKGEKGSLGLPGPPGR---DGSKGMRGEPGELGEP 559

Query: 76  G-----GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-GLARAPGG 128
           G     G+R     P LPGP GR G PG    +       G  G  G K E GL   P G
Sbjct: 560 GLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGER-------GEKGTRGEKGERGLDGFP-G 611

Query: 129 APGHGLQGGQP 139
            PG   Q G+P
Sbjct: 612 KPGDTGQQGRP 622



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 44/142 (30%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 4   GVRSLVSTPASWSAAGPPDGAGRPA---EHEATGGASSLHIKCMEAASLLPRPPGKA-PP 59
           G + L   P     AG P   G P    E    G    L +  ++         G A PP
Sbjct: 789 GEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPP 848

Query: 60  GAAKSTSRV--HCRAAEGGGLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
           G   +TS    H R     G +     P LPG  G  G PG    Q       G  G  G
Sbjct: 849 GLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQ-------GPTGPPG 901

Query: 117 RK-TEGLARAPG-----GAPGH 132
            K  EG   APG     GAPGH
Sbjct: 902 AKGQEGAHGAPGAAGNPGAPGH 923



 Score = 31.2 bits (69), Expect = 0.58
 Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 53  PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRA 112
           P G   P  AK     H      G       V  PGP+G  G  GA         L G  
Sbjct: 893 PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGA-------PGLRGTP 945

Query: 113 GGTGRKTEGLARAPGGAPGHGLQGGQP 139
           G  G + E  A    G+PG     G P
Sbjct: 946 GKDGERGEKGAAGEEGSPGPVGPRGDP 972



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 11/46 (23%)

Query: 53   PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLP-GPAGRSGGPG 97
            PPG + P   K +           G R +P  P P GPAGR G PG
Sbjct: 1049 PPGPSGPPGDKGSP----------GSRGLPGFPGPQGPAGRDGAPG 1084



 Score = 28.9 bits (63), Expect = 2.9
 Identities = 32/96 (33%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 51  PRPPG-KAPPGAAKSTSRVHCRAAEGGGLRPVPAVPL--------PGPAGRSGGPGAWSA 101
           P PPG   PPG   S          G    P P  P         PGP G  G PG    
Sbjct: 716 PGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPG---- 771

Query: 102 QKHGGHLSGRAGGTGRKTE-GLARAPGGAPGHGLQG 136
           ++    L G+ G  G   E GLA  PG     GL G
Sbjct: 772 ERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPG 807



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 41/135 (30%), Positives = 48/135 (35%), Gaps = 18/135 (13%)

Query: 19  GPPDGAGRPAEHEATG--GASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
           GPP   G P E    G  G   L  +  E   L  RP  K   G   +      R  +G 
Sbjct: 762 GPPGTKGEPGERGEDGLPGKPGLRGEIGEQG-LAGRPGEKGEAGLPGAPGFPGVRGEKGD 820

Query: 77  ----GLRPVPAVP-------LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-GLAR 124
               G   +P +          GPAG  G PG  S       + G  G  G K + GL  
Sbjct: 821 QGEKGELGLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPG 880

Query: 125 APG--GAPGH-GLQG 136
            PG  G PG  G QG
Sbjct: 881 EPGLQGRPGELGPQG 895



 Score = 28.1 bits (61), Expect = 4.9
 Identities = 41/142 (28%), Positives = 49/142 (34%), Gaps = 17/142 (11%)

Query: 4    GVRSLVSTPASWSAAGPPDGAGRPAEHEATG--GASSL----HIKCMEAASLLPRPPGKA 57
            G R L   P     AG     G P E    G  G SSL     I  +        PPG  
Sbjct: 1063 GSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPG-- 1120

Query: 58   PPGAA-----KSTSRVHCRAAEGG--GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLS 109
            PPG       K    V  +    G  G +     P LPGP G +G  G+   +   G + 
Sbjct: 1121 PPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEV- 1179

Query: 110  GRAGGTGRKTEGLARAPGGAPG 131
            G+ G  G         P G PG
Sbjct: 1180 GQKGDQGHPGVPGFMGPPGNPG 1201



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 77  GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
           GL+  P  P +PGP G  G PG        G   G  G TG   +     P G PG
Sbjct: 711 GLQGPPGPPGVPGPPGPGGSPGLPGEIGFPGK-PGPPGPTGPPGKDGPNGPPGPPG 765


>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
          Length = 430

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 32/97 (32%), Positives = 36/97 (37%), Gaps = 17/97 (17%)

Query: 2   HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61
           HG  RS          + P  G G P+   A    SSL  +    A     PPG  P  A
Sbjct: 118 HGSPRS--------GRSDPRPGPGPPSVGSARSSVSSLGSRGSAGAYADFLPPGACPAPA 169

Query: 62  AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGA 98
                    R+ E  G  P P   LP P GR GGP A
Sbjct: 170 ---------RSPEPAGPAPFPLPALPLPPGREGGPSA 197


>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 295

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 33/89 (37%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 51  PRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPA-VPLPGPAGRSGGPGAWSAQKHGGHLS 109
           P  P    PG      +   RAA GGG R  P  VP   PAG S           GG+ S
Sbjct: 176 PTTPASRNPGLRAQERQSGRRAAGGGGARAEPPRVPPCRPAGCS-----------GGNRS 224

Query: 110 GRAGGTGRKT---EGLARAPGGAPGHGLQ 135
            RA G G +T   +   R PG AP  GL+
Sbjct: 225 RRAAGAGPRTTRRKPPPRPPGTAPAAGLR 253



 Score = 27.3 bits (59), Expect = 8.4
 Identities = 41/141 (29%), Positives = 48/141 (34%), Gaps = 21/141 (14%)

Query: 17  AAGPPDGAGRPAEHEATGGAS---SLHIKCMEAASLLPRPPG--KAPPGAAKSTSRVHCR 71
           A+     A  P+   A  G     SL  +   A+S L    G    P G  KS       
Sbjct: 23  ASSSSRSAAAPSSSSAQSGPELGLSLGPRLPSASSKLRVFTGYFSVPHGVGKSAGAA--- 79

Query: 72  AAEGGGLRPVPAVPLP------GP--AGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
           A E GG R       P      GP  A R GG G W     GG L  R   T  +  G +
Sbjct: 80  AGEEGGARLQATRTWPAGILEGGPQVAARGGGRG-WE----GGGLGARRAVTAARRGGAS 134

Query: 124 RAPGGAPGHGLQGGQPHCCLQ 144
           R   G P       +P  C Q
Sbjct: 135 RPLAGEPWREAARRRPQQCPQ 155


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,438,543
Number of Sequences: 37866
Number of extensions: 783698
Number of successful extensions: 7164
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 698
Number of HSP's that attempted gapping in prelim test: 4716
Number of HSP's gapped (non-prelim): 2355
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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