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Search of human proteins with 239751555
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
(1252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 2614 0.0
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 2614 0.0
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 2035 0.0
gi|73476377 LBXCOR1 homolog [Homo sapiens] 460 e-129
gi|4506967 v-ski sarcoma viral oncogene homolog [Homo sapiens] 132 2e-30
gi|223029422 SKI-like isoform 3 [Homo sapiens] 121 4e-27
gi|223029420 SKI-like isoform 2 [Homo sapiens] 121 4e-27
gi|223029418 SKI-like isoform 1 [Homo sapiens] 121 4e-27
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 99 3e-20
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 99 3e-20
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 93 2e-18
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 93 2e-18
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 86 2e-16
gi|40288197 GATA binding protein 6 [Homo sapiens] 86 3e-16
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 83 2e-15
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 80 9e-15
gi|61966923 forkhead box B2 [Homo sapiens] 79 2e-14
gi|32307177 forkhead box G1 [Homo sapiens] 79 3e-14
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 79 4e-14
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 76 2e-13
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 76 2e-13
gi|48762934 alpha 2 type I collagen [Homo sapiens] 76 2e-13
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 75 5e-13
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 75 5e-13
gi|122937424 one cut homeobox 3 [Homo sapiens] 74 7e-13
gi|110832843 TBP-associated factor 4 [Homo sapiens] 74 1e-12
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 73 2e-12
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 71 6e-12
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 71 6e-12
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 69 2e-11
>gi|239751555 PREDICTED: functional smad suppressing element 18 [Homo
sapiens]
Length = 1252
Score = 2614 bits (6776), Expect = 0.0
Identities = 1252/1252 (100%), Positives = 1252/1252 (100%)
Query: 1 MASSPLPGPNDILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGIPIVSLVIDGQE 60
MASSPLPGPNDILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGIPIVSLVIDGQE
Sbjct: 1 MASSPLPGPNDILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGIPIVSLVIDGQE 60
Query: 61 RLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITK 120
RLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITK
Sbjct: 61 RLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITK 120
Query: 121 REAERLCKSFLGENRPPKLPDNFAFDVSHECAWGCRGSFIPARYNSSRAKCIKCSYCNMY 180
REAERLCKSFLGENRPPKLPDNFAFDVSHECAWGCRGSFIPARYNSSRAKCIKCSYCNMY
Sbjct: 121 REAERLCKSFLGENRPPKLPDNFAFDVSHECAWGCRGSFIPARYNSSRAKCIKCSYCNMY 180
Query: 181 FSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSR 240
FSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSR
Sbjct: 181 FSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSR 240
Query: 241 KRALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAG 300
KRALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAG
Sbjct: 241 KRALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAG 300
Query: 301 APHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGV 360
APHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGV
Sbjct: 301 APHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGV 360
Query: 361 GVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSL 420
GVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSL
Sbjct: 361 GVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSL 420
Query: 421 CHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLP 480
CHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLP
Sbjct: 421 CHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLP 480
Query: 481 VPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGP 540
VPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGP
Sbjct: 481 VPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGP 540
Query: 541 GSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVP 600
GSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVP
Sbjct: 541 GSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVP 600
Query: 601 APHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHP 660
APHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHP
Sbjct: 601 APHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHP 660
Query: 661 HHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPG 720
HHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPG
Sbjct: 661 HHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPG 720
Query: 721 GTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDP 780
GTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDP
Sbjct: 721 GTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDP 780
Query: 781 LVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPP 840
LVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPP
Sbjct: 781 LVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPP 840
Query: 841 LAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHSF 900
LAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHSF
Sbjct: 841 LAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHSF 900
Query: 901 FITDSDASGGDFWRERSGEHTQETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEF 960
FITDSDASGGDFWRERSGEHTQETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEF
Sbjct: 901 FITDSDASGGDFWRERSGEHTQETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEF 960
Query: 961 QVLKGNTSFPVFIYHPGQRHLGSLEAQRKVFFFTKGAMLAMCSSVWNHTDLPGGLRATAQ 1020
QVLKGNTSFPVFIYHPGQRHLGSLEAQRKVFFFTKGAMLAMCSSVWNHTDLPGGLRATAQ
Sbjct: 961 QVLKGNTSFPVFIYHPGQRHLGSLEAQRKVFFFTKGAMLAMCSSVWNHTDLPGGLRATAQ 1020
Query: 1021 DQVLEPGQFVEGWFPCCPVPLDPPLEHPDLNAVLHVSAQAALPSNVPRMNDSSSLNLCMA 1080
DQVLEPGQFVEGWFPCCPVPLDPPLEHPDLNAVLHVSAQAALPSNVPRMNDSSSLNLCMA
Sbjct: 1021 DQVLEPGQFVEGWFPCCPVPLDPPLEHPDLNAVLHVSAQAALPSNVPRMNDSSSLNLCMA 1080
Query: 1081 PHTSLYYSDFDIKIRDPLCSKFDQERKAWRPSQQKLKDFLLFMVLTPQLLPQGNQSVSSH 1140
PHTSLYYSDFDIKIRDPLCSKFDQERKAWRPSQQKLKDFLLFMVLTPQLLPQGNQSVSSH
Sbjct: 1081 PHTSLYYSDFDIKIRDPLCSKFDQERKAWRPSQQKLKDFLLFMVLTPQLLPQGNQSVSSH 1140
Query: 1141 PQGVSSLSLLRFQKACLKSDFQRVTAGERGHVHESQPKTTCLPVVLLIEPIVGLPTYCDV 1200
PQGVSSLSLLRFQKACLKSDFQRVTAGERGHVHESQPKTTCLPVVLLIEPIVGLPTYCDV
Sbjct: 1141 PQGVSSLSLLRFQKACLKSDFQRVTAGERGHVHESQPKTTCLPVVLLIEPIVGLPTYCDV 1200
Query: 1201 KSKSTRSYYAPNSAFQMRELNSEHFAAKISKYTQVKIRKGDEPELGWLSRVG 1252
KSKSTRSYYAPNSAFQMRELNSEHFAAKISKYTQVKIRKGDEPELGWLSRVG
Sbjct: 1201 KSKSTRSYYAPNSAFQMRELNSEHFAAKISKYTQVKIRKGDEPELGWLSRVG 1252
>gi|239746067 PREDICTED: functional smad suppressing element 18 [Homo
sapiens]
Length = 1252
Score = 2614 bits (6776), Expect = 0.0
Identities = 1252/1252 (100%), Positives = 1252/1252 (100%)
Query: 1 MASSPLPGPNDILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGIPIVSLVIDGQE 60
MASSPLPGPNDILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGIPIVSLVIDGQE
Sbjct: 1 MASSPLPGPNDILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGIPIVSLVIDGQE 60
Query: 61 RLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITK 120
RLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITK
Sbjct: 61 RLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITK 120
Query: 121 REAERLCKSFLGENRPPKLPDNFAFDVSHECAWGCRGSFIPARYNSSRAKCIKCSYCNMY 180
REAERLCKSFLGENRPPKLPDNFAFDVSHECAWGCRGSFIPARYNSSRAKCIKCSYCNMY
Sbjct: 121 REAERLCKSFLGENRPPKLPDNFAFDVSHECAWGCRGSFIPARYNSSRAKCIKCSYCNMY 180
Query: 181 FSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSR 240
FSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSR
Sbjct: 181 FSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSR 240
Query: 241 KRALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAG 300
KRALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAG
Sbjct: 241 KRALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAG 300
Query: 301 APHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGV 360
APHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGV
Sbjct: 301 APHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGV 360
Query: 361 GVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSL 420
GVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSL
Sbjct: 361 GVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSL 420
Query: 421 CHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLP 480
CHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLP
Sbjct: 421 CHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLP 480
Query: 481 VPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGP 540
VPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGP
Sbjct: 481 VPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGP 540
Query: 541 GSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVP 600
GSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVP
Sbjct: 541 GSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVP 600
Query: 601 APHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHP 660
APHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHP
Sbjct: 601 APHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHP 660
Query: 661 HHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPG 720
HHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPG
Sbjct: 661 HHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPG 720
Query: 721 GTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDP 780
GTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDP
Sbjct: 721 GTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDP 780
Query: 781 LVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPP 840
LVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPP
Sbjct: 781 LVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPP 840
Query: 841 LAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHSF 900
LAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHSF
Sbjct: 841 LAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHSF 900
Query: 901 FITDSDASGGDFWRERSGEHTQETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEF 960
FITDSDASGGDFWRERSGEHTQETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEF
Sbjct: 901 FITDSDASGGDFWRERSGEHTQETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEF 960
Query: 961 QVLKGNTSFPVFIYHPGQRHLGSLEAQRKVFFFTKGAMLAMCSSVWNHTDLPGGLRATAQ 1020
QVLKGNTSFPVFIYHPGQRHLGSLEAQRKVFFFTKGAMLAMCSSVWNHTDLPGGLRATAQ
Sbjct: 961 QVLKGNTSFPVFIYHPGQRHLGSLEAQRKVFFFTKGAMLAMCSSVWNHTDLPGGLRATAQ 1020
Query: 1021 DQVLEPGQFVEGWFPCCPVPLDPPLEHPDLNAVLHVSAQAALPSNVPRMNDSSSLNLCMA 1080
DQVLEPGQFVEGWFPCCPVPLDPPLEHPDLNAVLHVSAQAALPSNVPRMNDSSSLNLCMA
Sbjct: 1021 DQVLEPGQFVEGWFPCCPVPLDPPLEHPDLNAVLHVSAQAALPSNVPRMNDSSSLNLCMA 1080
Query: 1081 PHTSLYYSDFDIKIRDPLCSKFDQERKAWRPSQQKLKDFLLFMVLTPQLLPQGNQSVSSH 1140
PHTSLYYSDFDIKIRDPLCSKFDQERKAWRPSQQKLKDFLLFMVLTPQLLPQGNQSVSSH
Sbjct: 1081 PHTSLYYSDFDIKIRDPLCSKFDQERKAWRPSQQKLKDFLLFMVLTPQLLPQGNQSVSSH 1140
Query: 1141 PQGVSSLSLLRFQKACLKSDFQRVTAGERGHVHESQPKTTCLPVVLLIEPIVGLPTYCDV 1200
PQGVSSLSLLRFQKACLKSDFQRVTAGERGHVHESQPKTTCLPVVLLIEPIVGLPTYCDV
Sbjct: 1141 PQGVSSLSLLRFQKACLKSDFQRVTAGERGHVHESQPKTTCLPVVLLIEPIVGLPTYCDV 1200
Query: 1201 KSKSTRSYYAPNSAFQMRELNSEHFAAKISKYTQVKIRKGDEPELGWLSRVG 1252
KSKSTRSYYAPNSAFQMRELNSEHFAAKISKYTQVKIRKGDEPELGWLSRVG
Sbjct: 1201 KSKSTRSYYAPNSAFQMRELNSEHFAAKISKYTQVKIRKGDEPELGWLSRVG 1252
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 2035 bits (5273), Expect = 0.0
Identities = 971/972 (99%), Positives = 971/972 (99%)
Query: 1 MASSPLPGPNDILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGIPIVSLVIDGQE 60
MASSPLPGPNDILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGIPIVSLVIDGQE
Sbjct: 1 MASSPLPGPNDILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGIPIVSLVIDGQE 60
Query: 61 RLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITK 120
RLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITK
Sbjct: 61 RLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITK 120
Query: 121 REAERLCKSFLGENRPPKLPDNFAFDVSHECAWGCRGSFIPARYNSSRAKCIKCSYCNMY 180
REAERLCKSFLGENRPPKLPDNFAFDVSHECAWGCRGSFIPARYNSSRAKCIKCSYCNMY
Sbjct: 121 REAERLCKSFLGENRPPKLPDNFAFDVSHECAWGCRGSFIPARYNSSRAKCIKCSYCNMY 180
Query: 181 FSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSR 240
FSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSR
Sbjct: 181 FSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSR 240
Query: 241 KRALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAG 300
KRALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAG
Sbjct: 241 KRALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAG 300
Query: 301 APHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGV 360
APHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGV
Sbjct: 301 APHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGV 360
Query: 361 GVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSL 420
GVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSL
Sbjct: 361 GVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSL 420
Query: 421 CHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLP 480
CHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLP
Sbjct: 421 CHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLP 480
Query: 481 VPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGP 540
VPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGP
Sbjct: 481 VPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGP 540
Query: 541 GSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVP 600
GSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVP
Sbjct: 541 GSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVP 600
Query: 601 APHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHP 660
APHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHP
Sbjct: 601 APHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHP 660
Query: 661 HHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPG 720
HHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPG
Sbjct: 661 HHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPG 720
Query: 721 GTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDP 780
GTSC YPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDP
Sbjct: 721 GTSCSYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDP 780
Query: 781 LVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPP 840
LVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPP
Sbjct: 781 LVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPP 840
Query: 841 LAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHSF 900
LAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHSF
Sbjct: 841 LAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHSF 900
Query: 901 FITDSDASGGDFWRERSGEHTQETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEF 960
FITDSDASGGDFWRERSGEHTQETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEF
Sbjct: 901 FITDSDASGGDFWRERSGEHTQETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEF 960
Query: 961 QVLKGNTSFPVF 972
QVLKGNTSFPVF
Sbjct: 961 QVLKGNTSFPVF 972
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 460 bits (1183), Expect = e-129
Identities = 337/808 (41%), Positives = 385/808 (47%), Gaps = 106/808 (13%)
Query: 28 QPRPGHANLKPNQVGQVILYGIPIVSLVIDGQERLCLAQISNTLLKNFSYNEIHNRRVAL 87
QP G + LKPNQVG+ LYG+PIVSLVIDGQERLCLAQISNTLLKN+SYNEIHNRRVAL
Sbjct: 55 QPYSGSSALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVAL 114
Query: 88 GITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGENRPPKLPDNFAFDV 147
GITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGE++PPKLP+NFAFDV
Sbjct: 115 GITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENFAFDV 174
Query: 148 SHECAWGCRGSFIPARYNSSRAKCIKCSYCNMYFSPNKFIFHSHRTPDAKYTQPDAANFN 207
HECAWG RGSFIPARYNSSRAKCIKC YC+MYFSPNKFIFHSHRTPDAKYTQPDAANFN
Sbjct: 175 VHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFN 234
Query: 208 SWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSRKRALPQPG------------------A 249
SWRRHLKL+DKS DEL AWEDVKAMFNGG+R A PG
Sbjct: 235 SWRRHLKLSDKSATDELSHAWEDVKAMFNGGTRCGAEMAPGPPPHKSLRCGEDEAAGPPG 294
Query: 250 HPACHPLSSVKAAAVAAAAAVAGG-GGLLGPHLLGAPPPPPP--------PPPPLAELAG 300
P HP + A A+ A GG GG G P P PPP G
Sbjct: 295 PPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYG 354
Query: 301 APHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTG-GGGAGGGCVAG 359
P A P+ DD L A SGG G G GGGAGG +
Sbjct: 355 FPTAFGLCPKKDD-------------PVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASH 401
Query: 360 VGVGAGAGAGAGAGAKGPR----SYPVIPVPSKGSFGGVLQKFP---GCGGLFPHPYTFP 412
+ GAGAG G GA G + + V + + V FP G P P ++P
Sbjct: 402 LPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVP-SYP 460
Query: 413 AA-AAAFSLCHKKEDAGAAAEALGGAGA----GGAGAAPKAGLSGLFWPAGRKDAFYPPF 467
AA + A ++ A AAA A G+GA GA A ++GL G ++ P
Sbjct: 461 AAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGL-------GAEERC--PS 511
Query: 468 CMFWPPRTPGG----LPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSA 523
+ P G LP P PPP PP A G + R D GSA
Sbjct: 512 ALSRGPLDEDGTDEALPPPLAPLPPPPPPPA---RKGSYVSAFRPVVKDTESIAKLYGSA 568
Query: 524 EAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAA 583
A GP GP P AG G + SP S G S S P A
Sbjct: 569 REA---------YGAGPARGPGPGAGSGG-----YVSPDFLSEGSSSYNSASPDVDTADE 614
Query: 584 GAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGAS 643
+ P P AGGG P G + A GA
Sbjct: 615 PEVDVESNRFPDDEDAQEETEP---SAPSAGGG---------PDGEQPTGPPSATSSGAD 662
Query: 644 --AGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLP---PQPDEPGSERHHPAPP-- 696
A +P P P L+ P P G E P P
Sbjct: 663 GPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLG 722
Query: 697 -PPPPPPPPPPLAQHPHHRGL-LSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEG 754
P P P +H + L P + C P + ED+ +++ P+
Sbjct: 723 GPAPAKVFAPERDEHVKSAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETR-KSYPDQ 781
Query: 755 EEEEEGRDPDDDEEEDEETEVLLGDPLV 782
+ + D ED T + G LV
Sbjct: 782 RSISQPSPANTDRGEDGLTLDVTGTHLV 809
Score = 114 bits (284), Expect = 8e-25
Identities = 166/628 (26%), Positives = 225/628 (35%), Gaps = 164/628 (26%)
Query: 422 HKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPV 481
H + G A A G AG GG G AG+ YP P G +
Sbjct: 299 HPQRGLGLATGASGPAGPGGPGGG--AGVRS-----------YPVI-----PVPSKGFGL 340
Query: 482 PTYLQPP--PQP---PSALG-CALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQV 535
L PP P P P+A G C + P L EP G G+ G
Sbjct: 341 LQKLPPPLFPHPYGFPTAFGLCPKKDDPVL------GAGEPKGGPGTGSGGGGAGTGGG- 393
Query: 536 VANGPGSGPPPPAGGAGSRDALFESPPGGSG---GDCSAGSTPPADSVAAAGAGAAAAGS 592
A GPG+ PP GAG PGG G +G+ A +VAAA A A +
Sbjct: 394 -AGGPGASHLPPGAGAG---------PGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPT 443
Query: 593 ----GPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPH 648
PA +P P +P KA A ++A A+A A
Sbjct: 444 FPMFWPAAGSLPVPSYPAAQSQAKAV------------------AAAVAAAAAAAAAAAG 485
Query: 649 SAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPL- 707
S P P + PS L P DE G++ P P P PPPPPPP
Sbjct: 486 SGAPEPLDGAEPAKESGLGAEERCPSALSRGPL--DEDGTDEALPPPLAPLPPPPPPPAR 543
Query: 708 ------------------------AQHPHHRGLL---SPGGTSCCYPSED---------- 730
A+ + G PG S Y S D
Sbjct: 544 KGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYN 603
Query: 731 SSEDEDDEEEEQEVDVEGHKPPEGEEEEE---------GRDPDDDEEEDEETEVLLG--- 778
S+ + D +E EVDVE ++ P+ E+ +E G PD ++ + G
Sbjct: 604 SASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADG 663
Query: 779 ---DPLVGGGRFLQGRGPSEKG-------SSRDRAPAVAGAFPLGLNSSRLLQEDGKLGD 828
P G R + GP G ++ D + P G L + G LG
Sbjct: 664 PANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGG 723
Query: 829 PGSDLPPPPPPPLAPQK---------ASGGGSSSPGSP-VHHPSLEEQPSYKDSQKTKEN 878
P P AP++ A G +S +P H P E+ S D +T++
Sbjct: 724 PA------PAKVFAPERDEHVKSAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRK- 776
Query: 879 NQVIVSTKDDNSFSDKNKEHSFFITDSDASGGDFWRERSGEHTQETNSPHSLKKDVENMG 938
S D S S + + TD G T + H ++KD+EN+
Sbjct: 777 -----SYPDQRSISQPSPAN----TDRGEDG----------LTLDVTGTHLVEKDIENLA 817
Query: 939 KEELQKVLFEQIDLRRRLEQEFQVLKGN 966
+EELQK+L EQ++LR++LE+EFQ LK N
Sbjct: 818 REELQKLLLEQMELRKKLEREFQSLKDN 845
Score = 33.9 bits (76), Expect = 1.0
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 1094 IRDPLCSKFDQERKAWRPSQQKLKD 1118
+RD LC++ DQERKA QQKLK+
Sbjct: 867 VRDTLCNELDQERKARYAIQQKLKE 891
>gi|4506967 v-ski sarcoma viral oncogene homolog [Homo sapiens]
Length = 728
Score = 132 bits (332), Expect = 2e-30
Identities = 83/230 (36%), Positives = 123/230 (53%), Gaps = 24/230 (10%)
Query: 43 QVILYGIPIVSLVIDGQERLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEIL 102
+ +L G I V+ G++RLCL QI N++L++FS +I+ L I C +CT QLEIL
Sbjct: 102 ETVLEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINAVCDELHIYCSRCTADQLEIL 161
Query: 103 RRAGAMPISSRRCGMITKREAERLCKSFL-GENRPPKLPDNFAFD-------------VS 148
+ G +P S+ CG+ITK +AERLC + L G PP A V
Sbjct: 162 KVMGILPFSAPSCGLITKTDAERLCNALLYGGAYPPPCKKELAASLALGLELSERSVRVY 221
Query: 149 HECAWGCRGSFIPARYNSSRAKCIKCSYCNMYFSPNKFIFHSHRTPDAK--YTQPDAANF 206
HEC C+G +P Y+S A CI+C C + + P+KF+ HSH+ + + + D+AN
Sbjct: 222 HECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGFDSAN- 280
Query: 207 NSWRRHLKL----TDKSPQDELVFAWEDVKAMFNGGSR-KRALPQPGAHP 251
WR ++ L T K Q L +DVK F+ G++ KR +P+ + P
Sbjct: 281 --WRAYILLSQDYTGKEEQARLGRCLDDVKEKFDYGNKYKRRVPRVSSEP 328
>gi|223029422 SKI-like isoform 3 [Homo sapiens]
Length = 664
Score = 121 bits (304), Expect = 4e-27
Identities = 83/252 (32%), Positives = 119/252 (47%), Gaps = 30/252 (11%)
Query: 12 ILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGIPIVSLVIDGQERLCLAQISNTL 71
+ L PS P L P L Q +L G I + G++RLCL Q+ N++
Sbjct: 100 VFLPLPSPQVLPGPLLIPSDSSTELT-----QTVLEGESISCFQVGGEKRLCLPQVLNSV 154
Query: 72 LKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFL 131
L+ F+ +I+ L I C +CT QL IL+ G +P ++ CG+IT +A+RLC + L
Sbjct: 155 LREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALL 214
Query: 132 GENRPPKLPDN-----------------FAFDVSHECAWGCRGSFIPARYNSSRAKCIKC 174
RP P N AF+V HEC C+G F P Y A CI+C
Sbjct: 215 ---RPRTFPQNGSVLPAKSSLAQLKETGSAFEVEHECLGKCQGLFAPQFYVQPDAPCIQC 271
Query: 175 SYCNMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDK---SPQD-ELVFAWED 230
C F+P F+ HSHR+PD K T W +L + K +P++ +L E+
Sbjct: 272 LECCGMFAPQTFVMHSHRSPD-KRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEE 330
Query: 231 VKAMFNGGSRKR 242
+K F+ S KR
Sbjct: 331 MKEKFSMRSGKR 342
>gi|223029420 SKI-like isoform 2 [Homo sapiens]
Length = 638
Score = 121 bits (304), Expect = 4e-27
Identities = 83/252 (32%), Positives = 119/252 (47%), Gaps = 30/252 (11%)
Query: 12 ILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGIPIVSLVIDGQERLCLAQISNTL 71
+ L PS P L P L Q +L G I + G++RLCL Q+ N++
Sbjct: 120 VFLPLPSPQVLPGPLLIPSDSSTELT-----QTVLEGESISCFQVGGEKRLCLPQVLNSV 174
Query: 72 LKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFL 131
L+ F+ +I+ L I C +CT QL IL+ G +P ++ CG+IT +A+RLC + L
Sbjct: 175 LREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALL 234
Query: 132 GENRPPKLPDN-----------------FAFDVSHECAWGCRGSFIPARYNSSRAKCIKC 174
RP P N AF+V HEC C+G F P Y A CI+C
Sbjct: 235 ---RPRTFPQNGSVLPAKSSLAQLKETGSAFEVEHECLGKCQGLFAPQFYVQPDAPCIQC 291
Query: 175 SYCNMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDK---SPQD-ELVFAWED 230
C F+P F+ HSHR+PD K T W +L + K +P++ +L E+
Sbjct: 292 LECCGMFAPQTFVMHSHRSPD-KRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEE 350
Query: 231 VKAMFNGGSRKR 242
+K F+ S KR
Sbjct: 351 MKEKFSMRSGKR 362
>gi|223029418 SKI-like isoform 1 [Homo sapiens]
Length = 684
Score = 121 bits (304), Expect = 4e-27
Identities = 83/252 (32%), Positives = 119/252 (47%), Gaps = 30/252 (11%)
Query: 12 ILLASPSSAFQPDTLSQPRPGHANLKPNQVGQVILYGIPIVSLVIDGQERLCLAQISNTL 71
+ L PS P L P L Q +L G I + G++RLCL Q+ N++
Sbjct: 120 VFLPLPSPQVLPGPLLIPSDSSTELT-----QTVLEGESISCFQVGGEKRLCLPQVLNSV 174
Query: 72 LKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFL 131
L+ F+ +I+ L I C +CT QL IL+ G +P ++ CG+IT +A+RLC + L
Sbjct: 175 LREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALL 234
Query: 132 GENRPPKLPDN-----------------FAFDVSHECAWGCRGSFIPARYNSSRAKCIKC 174
RP P N AF+V HEC C+G F P Y A CI+C
Sbjct: 235 ---RPRTFPQNGSVLPAKSSLAQLKETGSAFEVEHECLGKCQGLFAPQFYVQPDAPCIQC 291
Query: 175 SYCNMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLTDK---SPQD-ELVFAWED 230
C F+P F+ HSHR+PD K T W +L + K +P++ +L E+
Sbjct: 292 LECCGMFAPQTFVMHSHRSPD-KRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEE 350
Query: 231 VKAMFNGGSRKR 242
+K F+ S KR
Sbjct: 351 MKEKFSMRSGKR 362
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 98.6 bits (244), Expect = 3e-20
Identities = 180/752 (23%), Positives = 248/752 (32%), Gaps = 239/752 (31%)
Query: 261 AAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQE 320
AA VA AAA + LG PPPPPP +EL K+ +++ E
Sbjct: 2 AAQVAPAAASS----------LGNPPPPPP-----SEL--------KKAEQQQREEAGGE 38
Query: 321 AAVVAAAS---LSAAAASLSVAAASG-----------GAGTGGGGAGGGCVAGVGVGA-- 364
AA AAA + AAA S A G GA + GGG GGG +G G GA
Sbjct: 39 AAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEP 98
Query: 365 --------------------------GAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKF 398
G G+ G GA + +P P+ G FG +
Sbjct: 99 DLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYG-FGQPYGRS 157
Query: 399 PGCGGLFPHPYTFPAAAAAFSLCH-KKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPA 457
P AAAA F H ++ G AA GG G A P+ +P
Sbjct: 158 PSA--------VAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHGFPN 209
Query: 458 GRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPG 517
+ +++YP + PPP P AL G +P
Sbjct: 210 HQYNSYYPNRSAY----------------PPPAPAYALSSPRGGTPG------------S 241
Query: 518 GAAGSAEAAPPPGQPPQVVANGP----------GSGPPPPAGGAGSR-------DALFES 560
GAA +A + PPP ++ G G P AGG + + L S
Sbjct: 242 GAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTS 301
Query: 561 P------PGGSGGDCSAG------STPPADSV-----AAAGAGAAAAGSGPAGSRVPAPH 603
P G GGD S G PAD AAA A AAAA SG A R H
Sbjct: 302 PSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQR---SH 358
Query: 604 HPHLLEGRKAGGG----------------------------------------SYHHSSA 623
H + G GGG H
Sbjct: 359 HAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYP 418
Query: 624 FRPVGGKDDAESLAKLHG----ASAGAPHSAQTHPHHHHHPHHHHHHHHPP----QPPSP 675
+P G + + G A G ++ Q P+ P + P Q P P
Sbjct: 419 GQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHP 478
Query: 676 LLLLPPQPDEPGSERHH--------PAPPPPPPPPPPPPLAQHPH---HRGLLSPGGTSC 724
PP +P S+ H P PP PP +Q P H+ +P
Sbjct: 479 QQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAP----- 533
Query: 725 CYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEE---------EEEGRDPDDDEEEDEETEV 775
YPS+ S+ + + + + P + ++ ++ P ++ ++T
Sbjct: 534 -YPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQT-- 590
Query: 776 LLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKL---GDPGS- 831
+ Q R P + S+D + A + P + SS+ QED L P S
Sbjct: 591 ----------AYSQQRFPPPQELSQDSFGSQASSAP-SMTSSKGGQEDMNLSLQSRPSSL 639
Query: 832 --------DLPPPPPPPLAPQKASGGGSSSPG 855
DLP L+P ++ G SSS G
Sbjct: 640 PDLSGSIDDLPMGTEGALSPGVSTSGISSSQG 671
Score = 36.6 bits (83), Expect = 0.15
Identities = 39/161 (24%), Positives = 56/161 (34%), Gaps = 21/161 (13%)
Query: 700 PPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEE 759
PPPPPP + + GG + + + E + +E E G P G+E ++
Sbjct: 16 PPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQD 75
Query: 760 GRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRL 819
G + + GGG G GP G+ D + A P ++ L
Sbjct: 76 GAESNGGG---------------GGGGAGSGGGP---GAEPDLKNSNGNAGPRPALNNNL 117
Query: 820 LQEDGKLGDPGSD---LPPPPPPPLAPQKASGGGSSSPGSP 857
+ G G SD PP P A G G SP
Sbjct: 118 TEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSP 158
Score = 32.7 bits (73), Expect = 2.2
Identities = 64/283 (22%), Positives = 94/283 (33%), Gaps = 31/283 (10%)
Query: 486 QPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQ-PPQVVANGPGSGP 544
QP QPPS G + P + +AE G A+ P Q PP + S
Sbjct: 1127 QPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVG 1186
Query: 545 PPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHH 604
A GS D+ F+ + + G P ++ G + P GS
Sbjct: 1187 IQDAFNDGS-DSTFQK---RNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSM------ 1236
Query: 605 PHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHH 664
RKA G SS P GG D S A G A Q +P+ +
Sbjct: 1237 ------RKAPGSDPFMSSGQGPNGGMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRT 1290
Query: 665 HHHHPPQ------PPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLS 718
P+ P P L+ P P S + P+ PP +H + S
Sbjct: 1291 EPGIGPEGNMSTGAPQPNLM----PSNPDSGMYSPSRYPPQQQQQQQ--QRHDSYGNQFS 1344
Query: 719 PGGT--SCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEE 759
GT +PS+ ++ + ++ + + PP E E
Sbjct: 1345 TQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPPAKRHEGE 1387
Score = 31.6 bits (70), Expect = 5.0
Identities = 39/153 (25%), Positives = 55/153 (35%), Gaps = 17/153 (11%)
Query: 446 PKAGLSGLFWPAGRKDAFY-----PPFCMFWPPR----TPGGLPV-PTYLQPPPQPPSAL 495
P AG++G P G + PP+ P R + G P P PPQ +
Sbjct: 824 PSAGMAGGINPMGAGGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQ----V 879
Query: 496 GCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRD 555
G + P + + + A A ++ PPG P G+G PP G S
Sbjct: 880 GSGMCPPPGGMNRKTQETAVAMHVAANSIQNRPPGYPNMNQGGMMGTG-PPYGQGINSMA 938
Query: 556 ALF--ESPPGGSGGDCSAGSTPPADSVAAAGAG 586
+ + PP GG + S A S G G
Sbjct: 939 GMINPQGPPYSMGGTMANNSAGMAASPEMMGLG 971
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 98.6 bits (244), Expect = 3e-20
Identities = 180/752 (23%), Positives = 248/752 (32%), Gaps = 239/752 (31%)
Query: 261 AAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQE 320
AA VA AAA + LG PPPPPP +EL K+ +++ E
Sbjct: 2 AAQVAPAAASS----------LGNPPPPPP-----SEL--------KKAEQQQREEAGGE 38
Query: 321 AAVVAAAS---LSAAAASLSVAAASG-----------GAGTGGGGAGGGCVAGVGVGA-- 364
AA AAA + AAA S A G GA + GGG GGG +G G GA
Sbjct: 39 AAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEP 98
Query: 365 --------------------------GAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKF 398
G G+ G GA + +P P+ G FG +
Sbjct: 99 DLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYG-FGQPYGRS 157
Query: 399 PGCGGLFPHPYTFPAAAAAFSLCH-KKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPA 457
P AAAA F H ++ G AA GG G A P+ +P
Sbjct: 158 PSA--------VAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHGFPN 209
Query: 458 GRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPG 517
+ +++YP + PPP P AL G +P
Sbjct: 210 HQYNSYYPNRSAY----------------PPPAPAYALSSPRGGTPG------------S 241
Query: 518 GAAGSAEAAPPPGQPPQVVANGP----------GSGPPPPAGGAGSR-------DALFES 560
GAA +A + PPP ++ G G P AGG + + L S
Sbjct: 242 GAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTS 301
Query: 561 P------PGGSGGDCSAG------STPPADSV-----AAAGAGAAAAGSGPAGSRVPAPH 603
P G GGD S G PAD AAA A AAAA SG A R H
Sbjct: 302 PSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQR---SH 358
Query: 604 HPHLLEGRKAGGG----------------------------------------SYHHSSA 623
H + G GGG H
Sbjct: 359 HAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYP 418
Query: 624 FRPVGGKDDAESLAKLHG----ASAGAPHSAQTHPHHHHHPHHHHHHHHPP----QPPSP 675
+P G + + G A G ++ Q P+ P + P Q P P
Sbjct: 419 GQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHP 478
Query: 676 LLLLPPQPDEPGSERHH--------PAPPPPPPPPPPPPLAQHPH---HRGLLSPGGTSC 724
PP +P S+ H P PP PP +Q P H+ +P
Sbjct: 479 QQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAP----- 533
Query: 725 CYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEE---------EEEGRDPDDDEEEDEETEV 775
YPS+ S+ + + + + P + ++ ++ P ++ ++T
Sbjct: 534 -YPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQT-- 590
Query: 776 LLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKL---GDPGS- 831
+ Q R P + S+D + A + P + SS+ QED L P S
Sbjct: 591 ----------AYSQQRFPPPQELSQDSFGSQASSAP-SMTSSKGGQEDMNLSLQSRPSSL 639
Query: 832 --------DLPPPPPPPLAPQKASGGGSSSPG 855
DLP L+P ++ G SSS G
Sbjct: 640 PDLSGSIDDLPMGTEGALSPGVSTSGISSSQG 671
Score = 36.6 bits (83), Expect = 0.15
Identities = 39/161 (24%), Positives = 56/161 (34%), Gaps = 21/161 (13%)
Query: 700 PPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEE 759
PPPPPP + + GG + + + E + +E E G P G+E ++
Sbjct: 16 PPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQD 75
Query: 760 GRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRL 819
G + + GGG G GP G+ D + A P ++ L
Sbjct: 76 GAESNGGG---------------GGGGAGSGGGP---GAEPDLKNSNGNAGPRPALNNNL 117
Query: 820 LQEDGKLGDPGSD---LPPPPPPPLAPQKASGGGSSSPGSP 857
+ G G SD PP P A G G SP
Sbjct: 118 TEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSP 158
Score = 31.6 bits (70), Expect = 5.0
Identities = 39/153 (25%), Positives = 55/153 (35%), Gaps = 17/153 (11%)
Query: 446 PKAGLSGLFWPAGRKDAFY-----PPFCMFWPPR----TPGGLPV-PTYLQPPPQPPSAL 495
P AG++G P G + PP+ P R + G P P PPQ +
Sbjct: 824 PSAGMAGGINPMGAGGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQ----V 879
Query: 496 GCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRD 555
G + P + + + A A ++ PPG P G+G PP G S
Sbjct: 880 GSGMCPPPGGMNRKTQETAVAMHVAANSIQNRPPGYPNMNQGGMMGTG-PPYGQGINSMA 938
Query: 556 ALF--ESPPGGSGGDCSAGSTPPADSVAAAGAG 586
+ + PP GG + S A S G G
Sbjct: 939 GMINPQGPPYSMGGTMANNSAGMAASPEMMGLG 971
Score = 31.6 bits (70), Expect = 5.0
Identities = 64/282 (22%), Positives = 98/282 (34%), Gaps = 48/282 (17%)
Query: 671 QPPSPL---LLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYP 727
QPPSP + PQ + S PP P P +Q P G+
Sbjct: 1131 QPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDA 1190
Query: 728 SEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGR---DPDDDEEEDEETEVLLGDPLVGG 784
D S D ++ G++P + GR +P+ D + DP +
Sbjct: 1191 FNDGS-DSTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKD-PYGSMRKAPGSDPFMSS 1248
Query: 785 GRFLQG-RGPSEKGSSRDRAPAVAGA-------FPLGLNSSRLLQEDGKLGDPGSDLPPP 836
G QG G SR P + +P G R+ E G +G G+
Sbjct: 1249 G---QGPNGGMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPG-IGPEGNMSTGA 1304
Query: 837 PPPPLAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNK 896
P P L P S+P S ++ PS P + Q+ + ++ N FS
Sbjct: 1305 PQPNLMP--------SNPDSGMYSPS-RYPPQQQQQQQQRHDSY-------GNQFS---- 1344
Query: 897 EHSFFITDSDASGGDFWRERSG--EHTQETNSPHSLKKDVEN 936
T SG F +++ + Q+ +SP L + +EN
Sbjct: 1345 ------TQGTPSGSPFPSQQTTMYQQQQQVSSPAPLPRPMEN 1380
Score = 31.2 bits (69), Expect = 6.5
Identities = 54/220 (24%), Positives = 73/220 (33%), Gaps = 27/220 (12%)
Query: 486 QPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQ-PPQVVANGPGSGP 544
QP QPPS G + P + +AE G A+ P Q PP + S
Sbjct: 1127 QPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVG 1186
Query: 545 PPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHH 604
A GS D+ F+ + + G P ++ G + P GS
Sbjct: 1187 IQDAFNDGS-DSTFQK---RNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSM------ 1236
Query: 605 PHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHH 664
RKA G SS P GG D S A G A Q +P+ +
Sbjct: 1237 ------RKAPGSDPFMSSGQGPNGGMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRT 1290
Query: 665 HHHHPPQ------PPSPLLLLPPQPDEPGSERHHPAPPPP 698
P+ P P L+ P P S + P+ PP
Sbjct: 1291 EPGIGPEGNMSTGAPQPNLM----PSNPDSGMYSPSRYPP 1326
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 92.8 bits (229), Expect = 2e-18
Identities = 136/570 (23%), Positives = 172/570 (30%), Gaps = 155/570 (27%)
Query: 285 PPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAA---VVAAASLSAAAA---SLSV 338
PPPP PPPPP LA ++P + + + + A + L S +
Sbjct: 4 PPPPAPPPPPTFALANT-----EKPTLNKTEQAGRNALLSDISKGKKLKKTVTNDRSAPI 58
Query: 339 AAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKF 398
GAG GGGG G G G G G G G G G GP
Sbjct: 59 LDKPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGP--------------------- 97
Query: 399 PGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAG 458
PG GGLF S ++ D+G G+ P L P G
Sbjct: 98 PGLGGLFQ-----AGMPKLRSTANRDNDSG--------------GSRPP-----LLPPGG 133
Query: 459 RKDAFYPPFCMFWPPRTPGGLPVPT--YLQPPPQPPSALGCALGESPALLRQAFLDLAEP 516
R + P F PP PG PVP+ + PP+P + P
Sbjct: 134 RSTSAKP----FSPPSGPGRFPVPSPGHRSGPPEPQRN-----------------RMPPP 172
Query: 517 GGAAGSAEAAPPPGQP--PQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGST 574
GS + PP P P+ + + P + PP PGG +
Sbjct: 173 RPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPV-------------PGGPRQPSPGPTP 219
Query: 575 PPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAE 634
PP G + P S P + P L P DD
Sbjct: 220 PPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPP---------------TPSRALDD-- 262
Query: 635 SLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPA 694
P + P H PP P + PP P P A
Sbjct: 263 -------------KPPPPPPPVGNRPSIHREAVPPPPPQNN---KPPVPSTPRPSASSQA 306
Query: 695 PPPPPPP--PPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPP 752
PPPPPPP P PPPL P S DE ++ + + PP
Sbjct: 307 PPPPPPPSRPGPPPL-------------------PPSSSGNDETPRLPQRNLSLSSSTPP 347
Query: 753 EGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFP- 811
G P E + DP G L P + S RA P
Sbjct: 348 LPSPGRSGPLPPPPSERPPPP---VRDP-PGRSGPLPPPPPVSRNGSTSRALPATPQLPS 403
Query: 812 -LGLNSSRLLQEDGKLGD-PGSDLPPPPPP 839
G++S R D P + PPPPPP
Sbjct: 404 RSGVDSPRSGPRPPLPPDRPSAGAPPPPPP 433
Score = 33.9 bits (76), Expect = 1.0
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 473 PRTPGGLPVPTYLQPPP---QPPSALGCALGESPALLRQAFLDLAEPGGA---AGSAEAA 526
P G LP P +PPP PP G L P + R A P + S +
Sbjct: 351 PGRSGPLPPPPSERPPPPVRDPPGRSG-PLPPPPPVSRNGSTSRALPATPQLPSRSGVDS 409
Query: 527 PPPGQPPQVVANGPGSG-PPPPAGGAGSRDALFESP 561
P G P + + P +G PPPP R+ +SP
Sbjct: 410 PRSGPRPPLPPDRPSAGAPPPPPPSTSIRNGFQDSP 445
Score = 32.3 bits (72), Expect = 2.9
Identities = 42/173 (24%), Positives = 59/173 (34%), Gaps = 32/173 (18%)
Query: 693 PAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEV--DVEGHK 750
P PPPP PPPPP T +E + ++ ++ + D+ K
Sbjct: 2 PVPPPPAPPPPP-----------------TFALANTEKPTLNKTEQAGRNALLSDISKGK 44
Query: 751 PPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGS-SRDRAPAVAGA 809
+ + P D+ + G GGG F G G GS P + G
Sbjct: 45 KLKKTVTNDRSAPILDKPKGAGAGG-GGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGL 103
Query: 810 FPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPGSPVHHPS 862
F G+ +L + D G PP PP GG S+ P PS
Sbjct: 104 FQAGM--PKLRSTANRDNDSGGSRPPLLPP---------GGRSTSAKPFSPPS 145
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 92.8 bits (229), Expect = 2e-18
Identities = 136/570 (23%), Positives = 172/570 (30%), Gaps = 155/570 (27%)
Query: 285 PPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAA---VVAAASLSAAAA---SLSV 338
PPPP PPPPP LA ++P + + + + A + L S +
Sbjct: 4 PPPPAPPPPPTFALANT-----EKPTLNKTEQAGRNALLSDISKGKKLKKTVTNDRSAPI 58
Query: 339 AAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKF 398
GAG GGGG G G G G G G G G G GP
Sbjct: 59 LDKPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGP--------------------- 97
Query: 399 PGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAG 458
PG GGLF S ++ D+G G+ P L P G
Sbjct: 98 PGLGGLFQ-----AGMPKLRSTANRDNDSG--------------GSRPP-----LLPPGG 133
Query: 459 RKDAFYPPFCMFWPPRTPGGLPVPT--YLQPPPQPPSALGCALGESPALLRQAFLDLAEP 516
R + P F PP PG PVP+ + PP+P + P
Sbjct: 134 RSTSAKP----FSPPSGPGRFPVPSPGHRSGPPEPQRN-----------------RMPPP 172
Query: 517 GGAAGSAEAAPPPGQP--PQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGST 574
GS + PP P P+ + + P + PP PGG +
Sbjct: 173 RPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPV-------------PGGPRQPSPGPTP 219
Query: 575 PPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAE 634
PP G + P S P + P L P DD
Sbjct: 220 PPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPP---------------TPSRALDD-- 262
Query: 635 SLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPA 694
P + P H PP P + PP P P A
Sbjct: 263 -------------KPPPPPPPVGNRPSIHREAVPPPPPQNN---KPPVPSTPRPSASSQA 306
Query: 695 PPPPPPP--PPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPP 752
PPPPPPP P PPPL P S DE ++ + + PP
Sbjct: 307 PPPPPPPSRPGPPPL-------------------PPSSSGNDETPRLPQRNLSLSSSTPP 347
Query: 753 EGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFP- 811
G P E + DP G L P + S RA P
Sbjct: 348 LPSPGRSGPLPPPPSERPPPP---VRDP-PGRSGPLPPPPPVSRNGSTSRALPATPQLPS 403
Query: 812 -LGLNSSRLLQEDGKLGD-PGSDLPPPPPP 839
G++S R D P + PPPPPP
Sbjct: 404 RSGVDSPRSGPRPPLPPDRPSAGAPPPPPP 433
Score = 33.9 bits (76), Expect = 1.0
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 473 PRTPGGLPVPTYLQPPP---QPPSALGCALGESPALLRQAFLDLAEPGGA---AGSAEAA 526
P G LP P +PPP PP G L P + R A P + S +
Sbjct: 351 PGRSGPLPPPPSERPPPPVRDPPGRSG-PLPPPPPVSRNGSTSRALPATPQLPSRSGVDS 409
Query: 527 PPPGQPPQVVANGPGSG-PPPPAGGAGSRDALFESP 561
P G P + + P +G PPPP R+ +SP
Sbjct: 410 PRSGPRPPLPPDRPSAGAPPPPPPSTSIRNGFQDSP 445
Score = 32.3 bits (72), Expect = 2.9
Identities = 42/173 (24%), Positives = 59/173 (34%), Gaps = 32/173 (18%)
Query: 693 PAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEV--DVEGHK 750
P PPPP PPPPP T +E + ++ ++ + D+ K
Sbjct: 2 PVPPPPAPPPPP-----------------TFALANTEKPTLNKTEQAGRNALLSDISKGK 44
Query: 751 PPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGS-SRDRAPAVAGA 809
+ + P D+ + G GGG F G G GS P + G
Sbjct: 45 KLKKTVTNDRSAPILDKPKGAGAGG-GGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGL 103
Query: 810 FPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPGSPVHHPS 862
F G+ +L + D G PP PP GG S+ P PS
Sbjct: 104 FQAGM--PKLRSTANRDNDSGGSRPPLLPP---------GGRSTSAKPFSPPS 145
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 86.3 bits (212), Expect = 2e-16
Identities = 91/320 (28%), Positives = 117/320 (36%), Gaps = 102/320 (31%)
Query: 491 PPSALGCALGESPALLRQAFLDLAEPG--------GAAGSAEAAPPPGQPPQVVANGPGS 542
PPS A E+PA +A +A PG G++G+ +APPP PP P
Sbjct: 106 PPSQAFPAHPEAPAAAARAAALVAHPGAGSYPCGGGSSGAQPSAPPPPAPPLPPTPSPPP 165
Query: 543 GPPPP------------AGGAG------SRD--------------ALFESPPGGSGGDCS 570
PPPP +GG G SRD A+ +P GG +
Sbjct: 166 PPPPPPPPALSGYTTTNSGGGGSSGKGHSRDFVLRRDLSATAPAAAMHGAPLGGEQRSGT 225
Query: 571 AGSTPPADSVAAAGAGAAAAG--SGPAGSRVPA------------PHHPHLLEGRKAGGG 616
PA +AG +A+G +GP GS PA HPH L G+ G
Sbjct: 226 GSPQHPAPPPHSAGMFISASGTYAGPDGSGGPALFPALHDTPGAPGGHPHPLNGQMRLGL 285
Query: 617 SYHHSSAFRPVGGKDD----------------AESLAKLHG----------ASAGAPHSA 650
+ ++A + G+ + A + A LHG A+A A +A
Sbjct: 286 AAAAAAAAAELYGRAEPPFAPRSGDAHYGAVAAAAAAALHGYGAVNLNLNLAAAAAAAAA 345
Query: 651 QTHPHHHHH-------------PHHHHHHHHPPQPPSPLLLLPPQP---------DEPGS 688
PH HH H H HH H P L QP +P
Sbjct: 346 GPGPHLQHHAPPPAPPPPPAPAQHPHQHHPHLPGAAGAFLRYMRQPIKQELICKWIDPDE 405
Query: 689 ERHHPAPPPPPPPPPPPPLA 708
P PPPPPPPPPPPP A
Sbjct: 406 LAGLPPPPPPPPPPPPPPPA 425
Score = 69.3 bits (168), Expect = 2e-11
Identities = 102/352 (28%), Positives = 126/352 (35%), Gaps = 85/352 (24%)
Query: 249 AHPACHPLSSVKAAAVAA---AAAVAGGGGLLG----------PHL--LGAPPPPPPPPP 293
AHP P ++ +AAA+ A A + GGG G P L +PPPPPPPPP
Sbjct: 113 AHPEA-PAAAARAAALVAHPGAGSYPCGGGSSGAQPSAPPPPAPPLPPTPSPPPPPPPPP 171
Query: 294 PLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGG-- 351
P A L+G + S ++ + S +A AA++ A G +G G
Sbjct: 172 PPA-LSGYTTTNSGGGGSSGKGHS-RDFVLRRDLSATAPAAAMHGAPLGGEQRSGTGSPQ 229
Query: 352 --AGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHP- 408
A AG+ + A G+ GP +P L PG G PHP
Sbjct: 230 HPAPPPHSAGMFISASGTYAGPDGSGGPALFP------------ALHDTPGAPGGHPHPL 277
Query: 409 -------YTFPAAAAAFSLCHKKED--------------AGAAAEALGGAGA-------G 440
AAAAA L + E A AAA AL G GA
Sbjct: 278 NGQMRLGLAAAAAAAAAELYGRAEPPFAPRSGDAHYGAVAAAAAAALHGYGAVNLNLNLA 337
Query: 441 GAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALG 500
A AA AG P PP P P P Q P P A G L
Sbjct: 338 AAAAAAAAG------PGPHLQHHAPP-----PAPPPPPAPAQHPHQHHPHLPGAAGAFLR 386
Query: 501 ESPALLRQAFL-DLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGA 551
++Q + +P AG PPP PP PPPPAGGA
Sbjct: 387 YMRQPIKQELICKWIDPDELAGLPPPPPPPPPPP----------PPPPAGGA 428
Score = 46.2 bits (108), Expect = 2e-04
Identities = 41/116 (35%), Positives = 46/116 (39%), Gaps = 5/116 (4%)
Query: 191 HRTPDAKYTQPDAANFNSWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSRKRALPQPGAH 250
H TP A P N R L + EL E A +G + A+ A
Sbjct: 264 HDTPGAPGGHPHPLN-GQMRLGLAAAAAAAAAELYGRAEPPFAPRSGDAHYGAVAAAAA- 321
Query: 251 PACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHH 306
A H +V AAAA A G GPHL PPP PPPPP A PH HH
Sbjct: 322 AALHGYGAVNLNLNLAAAAAAAAAGP-GPHLQHHAPPPAPPPPPAP--AQHPHQHH 374
Score = 43.5 bits (101), Expect = 0.001
Identities = 47/176 (26%), Positives = 58/176 (32%), Gaps = 15/176 (8%)
Query: 669 PPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPS 728
P PP P PP P P P PPPPPPPPPP A + GG+S S
Sbjct: 147 PSAPPPPA---PPLP---------PTPSPPPPPPPPPPPALSGYTTTNSGGGGSSGKGHS 194
Query: 729 EDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFL 788
D D + G P GE+ P + + G
Sbjct: 195 RDFVLRRDLSATAPAAAMHG-APLGGEQRSGTGSPQHPAPPPHSAGMFISASGTYAGPDG 253
Query: 789 QGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQ 844
G GP+ + D P G P LN L ++L PP AP+
Sbjct: 254 SG-GPALFPALHD-TPGAPGGHPHPLNGQMRLGLAAAAAAAAAELYGRAEPPFAPR 307
Score = 36.2 bits (82), Expect = 0.20
Identities = 45/193 (23%), Positives = 57/193 (29%), Gaps = 26/193 (13%)
Query: 511 LDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCS 570
L L+ P A + AP + PG+G P GG+ PP
Sbjct: 102 LGLSPPSQAFPAHPEAPAAAARAAALVAHPGAGSYPCGGGSSGAQPSAPPPPAPPLPPTP 161
Query: 571 AGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGK 630
+ PP A +G SG GS +G G HS F
Sbjct: 162 SPPPPPPPPPPPALSGYTTTNSGGGGS---------------SGKG---HSRDFVLRRDL 203
Query: 631 DDAESLAKLHGASAGAPHSAQTHPHHHHHPHHH--------HHHHHPPQPPSPLLLLPPQ 682
A +HGA G + T H P H + P L P
Sbjct: 204 SATAPAAAMHGAPLGGEQRSGTGSPQHPAPPPHSAGMFISASGTYAGPDGSGGPALFPAL 263
Query: 683 PDEPGSERHHPAP 695
D PG+ HP P
Sbjct: 264 HDTPGAPGGHPHP 276
Score = 31.2 bits (69), Expect = 6.5
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 804 PAVAGAFPLGLNSSRLLQEDGKLGDPG--SDLPPPPPPPLAPQKASGGGSSSPGS 856
P AGAF + + K DP + LPPPPPPP P G + P S
Sbjct: 378 PGAAGAFLRYMRQPIKQELICKWIDPDELAGLPPPPPPPPPPPPPPPAGGAKPCS 432
Score = 30.8 bits (68), Expect = 8.5
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 829 PGSDLPPPPPPPLAPQKAS--------GGGSSSPG 855
P + PPPPPPP P S GGGSS G
Sbjct: 158 PPTPSPPPPPPPPPPPALSGYTTTNSGGGGSSGKG 192
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 85.5 bits (210), Expect = 3e-16
Identities = 75/262 (28%), Positives = 98/262 (37%), Gaps = 40/262 (15%)
Query: 469 MFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQA---FLDLAEPGGAAGSAEA 525
+ W R G P + P + L + PA A F+ A AA +A +
Sbjct: 127 LLWSSR--GAKLSPFAPEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAAS 184
Query: 526 APP-----------PGQPPQVVANGPGSGPPPPAGGAGSR----DALFESPPGGSGGDCS 570
+P PG P + G GSGP AGGAG+ A +SPP GSGG +
Sbjct: 185 SPVYVPTTRVGSMLPGLPYHL--QGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAA 242
Query: 571 AGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGK 630
G AAG G A + + +R P P + G G Y + + G
Sbjct: 243 GGG--------AAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAAGSGGAGGVS 294
Query: 631 DDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSER 690
SLA + G + P + + HHHHHHHH P P SP + P P P
Sbjct: 295 GGGSSLAAMGGREPQYSSLSAARPLNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPF 354
Query: 691 HHP----------APPPPPPPP 702
P AP P P P
Sbjct: 355 ETPVLHSLQSRAGAPLPVPRGP 376
Score = 35.8 bits (81), Expect = 0.26
Identities = 52/184 (28%), Positives = 66/184 (35%), Gaps = 32/184 (17%)
Query: 280 HLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLS-- 337
H GAP P P +A G + F D L +AA + S+ A LS
Sbjct: 86 HPFGAPHGPSAPG--VAGPGGNLSSWEDLLLFTD----LDQAATASKLLWSSRGAKLSPF 139
Query: 338 -----------VAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRS-----YP 381
+AA S GA GG V A A A A + P + P
Sbjct: 140 APEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLP 199
Query: 382 VIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGG 441
+P +GS G G G HP +P A+A +G A G AG GG
Sbjct: 200 GLPYHLQGSGSGPANHAGGAGA---HP-GWPQASAD----SPPYGSGGGAAGGGAAGPGG 251
Query: 442 AGAA 445
AG+A
Sbjct: 252 AGSA 255
Score = 31.6 bits (70), Expect = 5.0
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
Query: 518 GAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPA 577
GAAG A+A+ P A P + P P + + S E PGG+ +C TP
Sbjct: 15 GAAG-ADASDSRAFP----AREPSTPPSPISSSSSSCSRGGERGPGGAS-NCG---TPQL 65
Query: 578 DSVAAAGAGAAAAG-SGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESL 636
D+ AAAG A + S A APH P G GG+ D A +
Sbjct: 66 DTEAAAGPPARSLLLSSYASHPFGAPHGPS-APGVAGPGGNLSSWEDLLLFTDLDQAATA 124
Query: 637 AKLHGASAGA 646
+KL +S GA
Sbjct: 125 SKLLWSSRGA 134
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 82.8 bits (203), Expect = 2e-15
Identities = 103/358 (28%), Positives = 123/358 (34%), Gaps = 90/358 (25%)
Query: 440 GGAGAAPKAGLSGLF--WPAGRKDAFYPPFCMFWPPRTPGGLPVP-TYLQPPPQPPSALG 496
G A A P A L +F +P C PP P+ Y+ P P
Sbjct: 159 GAAAARPAAHLPQIFSKYPGSHYPEIVRSPCK--PPLNYETAPLQGNYVAFPSDPAYFRS 216
Query: 497 CALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDA 556
+ PA A AA +A AA QV A GP AGG GS
Sbjct: 217 LLCSKHPAAAAAA-------AAAAAAAAAAAAAAAYYQVSAAGPQPKAAAGAGGPGSLSY 269
Query: 557 LFESPPGGSGGDC----SAGST-----PPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHL 607
+ GG+ DC AG+ P + AA A AAAA + A + HL
Sbjct: 270 RCKRKRGGAK-DCLLAPHAGARRLLLLPRSYKAKAAAAAAAAAAAAAAAAGATCLERFHL 328
Query: 608 LEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHH 667
+ G F P PH HHHHH HHHHHHH
Sbjct: 329 VNG-------------FCP-------------------PPH------HHHHHHHHHHHHH 350
Query: 668 HPPQPPSPLLLLPPQPDEPGSERHHPAPPP-----PPPPPPPPPLAQHPHHRGLLSPGGT 722
H QPP Q P HH P P P + + H S G+
Sbjct: 351 HRAQPPQ-------QSHHP---PHHHRPQPHLGSFPESCSSDSESSSYSDHAANDSDFGS 400
Query: 723 SCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDD------EEEDEETE 774
S S S +E++EE E+E E EEEEEG D EEED TE
Sbjct: 401 SLSSSSNSVSSEEEEEEGEEE---------EEEEEEEGGSGASDSSEVSSEEEDSSTE 449
Score = 40.8 bits (94), Expect = 0.008
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 48 GIPIVSLVIDGQERLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGA 107
G+ + L+I G++ L+Q+ LLKN +H R L + C +L L+ +
Sbjct: 13 GVRLGYLIIKGKQMFALSQVFTDLLKNIPRTTVHKRMDHLKVKKHHCDLEELRKLKAINS 72
Query: 108 MPISSRRCGMITKREAERLCKS 129
+ + +C +I++ + E L S
Sbjct: 73 IAFHAAKCTLISREDVEALYTS 94
Score = 32.7 bits (73), Expect = 2.2
Identities = 42/121 (34%), Positives = 47/121 (38%), Gaps = 30/121 (24%)
Query: 325 AAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIP 384
AAA+ +AAAA+ + AAA+ A A G A AGAG G SY
Sbjct: 224 AAAAAAAAAAAAAAAAAAAAAYYQVSAA----------GPQPKAAAGAGGPGSLSY---- 269
Query: 385 VPSKGSFGGVLQKF--PGCGG----LFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAG 438
K GG P G L P Y AAAAA A AAA A AG
Sbjct: 270 -RCKRKRGGAKDCLLAPHAGARRLLLLPRSYKAKAAAAA---------AAAAAAAAAAAG 319
Query: 439 A 439
A
Sbjct: 320 A 320
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 80.5 bits (197), Expect = 9e-15
Identities = 120/448 (26%), Positives = 156/448 (34%), Gaps = 84/448 (18%)
Query: 485 LQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAA-----PPPGQPPQVVANG 539
L P P+ P L CAL R+ L+++ A AA PP QP
Sbjct: 588 LAPSPRCPPPLACALQAFSLGQREDSLEVSSFCSEALVTCAALTHPRVPPLQPMGPTCPT 647
Query: 540 PGSGPPPPAGGAGSRDALFESPPGGSGGDC-SAGSTPPADSVAAAGAGAAAAGSGPAGSR 598
P PPP A + F +PP G S GS P A + +AG +A GP S
Sbjct: 648 PAPVPPPEA------PSPFRAPPFHPPGPMPSVGSMPSAGPMPSAGPMPSA---GPVPSA 698
Query: 599 VPAP----HH------------PHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGA 642
P P +H P LL G + + P G + G
Sbjct: 699 RPGPPTTANHLGLSVPGLVSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIPPDETFGG 758
Query: 643 SAGAPHSAQTHPHHHHHPHHHHHHHH----------------PPQPPS-----------P 675
P A H PP PPS P
Sbjct: 759 R--VPRPAFVHYDKEEASDVEISLESDSDDSVVIVPEGLPPLPPPPPSGATPPPIAPTGP 816
Query: 676 LLLLPPQP--DEPGSERHHPAPPPPPPPPPPP---PLAQHPHH---RGLLSPGGTSCCYP 727
PP P +EP P P PPPPPPPPP P+ P G +PGG
Sbjct: 817 PTASPPVPAKEEPEELPAAPGPLPPPPPPPPPVPGPVTLPPPQLVPEG--TPGGGGPPAL 874
Query: 728 SED-------SSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDP 780
ED SS++E++EEEE+E + E + E + EEE D ++ EE+EE E +
Sbjct: 875 EEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEE 934
Query: 781 LVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPP 840
L+ E + V L ++ E+G P LPP PPP
Sbjct: 935 FEEEEGELEEEEEEEDEEEEEELEEVE---DLEFGTAGGEVEEG--APPPPTLPPALPPP 989
Query: 841 LAPQKASGGGSSSPG--SPVHHPSLEEQ 866
+P K PG V P EE+
Sbjct: 990 ESPPKVQPEPEPEPGLLLEVEEPGTEEE 1017
Score = 47.4 bits (111), Expect = 9e-05
Identities = 69/309 (22%), Positives = 112/309 (36%), Gaps = 45/309 (14%)
Query: 668 HPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYP 727
HPP P + +P P + A P P P PP A +H GL PG S
Sbjct: 666 HPPGPMPSVGSMPSAGPMPSAGPMPSAGPVPSARPGPPTTA---NHLGLSVPGLVSVPPR 722
Query: 728 SEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEE---GRDPDD-----DEEEDEETEVLL-- 777
E+ E + PP +E GR P D+EE + E+ L
Sbjct: 723 LLPGPENHRAGSNEDPILAPSGTPPPTIPPDETFGGRVPRPAFVHYDKEEASDVEISLES 782
Query: 778 --GDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPP 835
D +V L P + A G P +E +L LPP
Sbjct: 783 DSDDSVVIVPEGLPPLPPPPPSGATPPPIAPTGP-PTASPPVPAKEEPEELPAAPGPLPP 841
Query: 836 PPPPP--------LAPQKASGGGSSSPGSPVHHPSLEE--------QPSYKDSQKTKENN 879
PPPPP L P + G+ G P P+LEE ++ ++ +E
Sbjct: 842 PPPPPPPVPGPVTLPPPQLVPEGTPGGGGP---PALEEDLTVININSSDEEEEEEEEEEE 898
Query: 880 QVIVSTKDDNSFSDKNKEHSFFITDSDASGGDF---WRERSGEHTQETNSPHSLKKDVEN 936
+ +++ F ++ ++ + + + +F + E GE +E +++ +
Sbjct: 899 EEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEE-------EEEEDE 951
Query: 937 MGKEELQKV 945
+EEL++V
Sbjct: 952 EEEEELEEV 960
Score = 36.2 bits (82), Expect = 0.20
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 17/121 (14%)
Query: 670 PQP-PSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPS 728
P+P P P LLL + +EPG+E A P P P G G P
Sbjct: 997 PEPEPEPGLLL--EVEEPGTEEERGADTAPTLAPEALPSQGEVEREGESPAAGP----PP 1050
Query: 729 EDSSEDEDD------EEEEQEVDVEGHKPPEGEEEEEGRDPDD----DEEEDEETEVLLG 778
++ E+E EEE ++ + PPE EEE + E+E ++T +L
Sbjct: 1051 QELVEEEPSAPPTLLEEETEDGSDKVQPPPETPAEEEMETETEAEALQEKEQDDTAAMLA 1110
Query: 779 D 779
D
Sbjct: 1111 D 1111
Score = 33.1 bits (74), Expect = 1.7
Identities = 30/101 (29%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 680 PPQPDEPGSERHHPAPPPP-------PPPPPPPPLAQHPHHRGLLSPGGTSCCYP-SEDS 731
PP P P PA PPP P P P P L G G + ++
Sbjct: 977 PPPPTLP------PALPPPESPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAPTLAPEA 1030
Query: 732 SEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEE 772
+ + E E E G P E EEE P EEE E+
Sbjct: 1031 LPSQGEVEREGESPAAGPPPQELVEEEPSAPPTLLEEETED 1071
Score = 32.7 bits (73), Expect = 2.2
Identities = 30/95 (31%), Positives = 35/95 (36%), Gaps = 20/95 (21%)
Query: 472 PPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQ 531
PP P P P+ PPP P+ A PA EP + PPP
Sbjct: 796 PPLPP---PPPSGATPPPIAPTGPPTASPPVPAK--------EEPEELPAAPGPLPPPPP 844
Query: 532 PPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSG 566
PP V GP + PPP + E PGG G
Sbjct: 845 PPPPVP-GPVTLPPP--------QLVPEGTPGGGG 870
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 79.3 bits (194), Expect = 2e-14
Identities = 36/79 (45%), Positives = 39/79 (49%), Gaps = 15/79 (18%)
Query: 642 ASAGAPHSAQTHPHHHHHPHHHHHHH---------HPPQPPSPLLLLPPQPDEPGSERHH 692
++ GA HPHHHHHPHHHHHHH HPPQPP PP P P H+
Sbjct: 126 SAPGAGPGGHLHPHHHHHPHHHHHHHAAAHHHHHHHPPQPP------PPPPPPPPHMVHY 179
Query: 693 PAPPPPPPPPPPPPLAQHP 711
PP P PPP L P
Sbjct: 180 FHQQPPTAPQPPPHLPSQP 198
Score = 48.9 bits (115), Expect = 3e-05
Identities = 72/264 (27%), Positives = 90/264 (34%), Gaps = 61/264 (23%)
Query: 285 PPPPPPPPPP--------LAELAGAPHAH-----------HKRPRFDDDDDSLQEAAVVA 325
PPPPPPPPPP A P H +P+ +QEAA VA
Sbjct: 165 PPPPPPPPPPHMVHYFHQQPPTAPQPPPHLPSQPPQQPPQQSQPQQPSHPGKMQEAAAVA 224
Query: 326 AASLSAAAASL-SVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAG------AGAGAKGPR 378
AA+ +AAAA++ SV S G G A A +G G KG
Sbjct: 225 AAAAAAAAAAVGSVGRLSQFPPYGLGSAAAAAAAAAASTSGFKHPFAIENIIGRDYKGVL 284
Query: 379 SYPVIPV---------PSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGA 429
+P+ P G G V+ ++PH + AAA + A A
Sbjct: 285 QAGGLPLASVMHHLGYPVPGQLGNVV------SSVWPHVGVMDSVAAAAA-------AAA 331
Query: 430 AAEALGGAGAGGAGAAPKA-------GLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVP 482
AA G G G K+ L + P A PP P GL VP
Sbjct: 332 AAGVPVGPEYGAFGVPVKSLCHSASQSLPAMPVPIKPTPAL-PPVSALQP-----GLTVP 385
Query: 483 TYLQPPPQPPSALGCALGESPALL 506
Q PP P + A A L
Sbjct: 386 AASQQPPAPSTVCSAAAASPVASL 409
Score = 33.1 bits (74), Expect = 1.7
Identities = 53/241 (21%), Positives = 74/241 (30%), Gaps = 65/241 (26%)
Query: 386 PSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAA 445
P KGSF + P CG +F + S +++ AG +A
Sbjct: 81 PGKGSFWAL---HPDCGDMFENG----------SFLRRRKRFKVLRADHTHLHAGSTKSA 127
Query: 446 PKAGLSGLFWP---------------AGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPP-- 488
P AG G P A +PP PP P + + QPP
Sbjct: 128 PGAGPGGHLHPHHHHHPHHHHHHHAAAHHHHHHHPPQPPPPPPPPPPHMVHYFHQQPPTA 187
Query: 489 PQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPA 548
PQPP L + PP QPPQ S P P+
Sbjct: 188 PQPPPHL-----------------------------PSQPPQQPPQQ------SQPQQPS 212
Query: 549 GGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLL 608
++A + + + GS G G+AAA + A + HP +
Sbjct: 213 HPGKMQEAAAVAAAAAAAAAAAVGSVGRLSQFPPYGLGSAAAAAAAAAASTSGFKHPFAI 272
Query: 609 E 609
E
Sbjct: 273 E 273
Score = 33.1 bits (74), Expect = 1.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 834 PPPPPPPLAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTK 876
PPPPPPP P P +P P L QP + Q+++
Sbjct: 165 PPPPPPPPPPHMVHYFHQQPPTAPQPPPHLPSQPPQQPPQQSQ 207
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 79.0 bits (193), Expect = 3e-14
Identities = 56/159 (35%), Positives = 67/159 (42%), Gaps = 51/159 (32%)
Query: 640 HGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPP- 698
H AS G H HP HHHH HHHHHHHPP P PQP P ++ P PPPP
Sbjct: 33 HHASHG--HHNSHHPQHHHH--HHHHHHHPPPP-------APQPPPPPQQQQPPPPPPPA 81
Query: 699 -----------------------PPPPPPPPLAQHPHHR-----GLLSPGGTSCCYPSED 730
PPPPPPPP A + G PGG P E
Sbjct: 82 PQPPQTRGAPAADDDKGPQQLLLPPPPPPPPAAALDGAKADGLGGKGEPGGG----PGEL 137
Query: 731 SSEDEDDEE-------EEQEVDVEGHKPPEGEEEEEGRD 762
+ D++E EE++ EG K EG +E E ++
Sbjct: 138 APVGPDEKEKGAGAGGEEKKGAGEGGKDGEGGKEGEKKN 176
Score = 48.1 bits (113), Expect = 5e-05
Identities = 41/105 (39%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 284 APPPPPPP----PPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVA 339
AP PPPPP PPP A P P DDD Q ++ AA+L A
Sbjct: 62 APQPPPPPQQQQPPPPPPPAPQPPQTRGAPAADDDKGPQQ--LLLPPPPPPPPAAALDGA 119
Query: 340 AASGGAGTGGGGAGGGCVAGVG-----VGAGAGA----GAGAGAK 375
A G G G G G G +A VG GAGAG GAG G K
Sbjct: 120 KADGLGGKGEPGGGPGELAPVGPDEKEKGAGAGGEEKKGAGEGGK 164
Score = 45.1 bits (105), Expect = 4e-04
Identities = 37/119 (31%), Positives = 42/119 (35%), Gaps = 28/119 (23%)
Query: 285 PPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGG 344
PPPPPPP P + GAP A DDD + ++ AA+L A A G
Sbjct: 74 PPPPPPPAPQPPQTRGAPAA---------DDDKGPQQLLLPPPPPPPPAAALDGAKADGL 124
Query: 345 AGTG-------------------GGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIP 384
G G G GAGG G G G G G G K Y P
Sbjct: 125 GGKGEPGGGPGELAPVGPDEKEKGAGAGGEEKKGAGEGGKDGEGGKEGEKKNGKYEKPP 183
Score = 38.5 bits (88), Expect = 0.041
Identities = 38/128 (29%), Positives = 47/128 (36%), Gaps = 26/128 (20%)
Query: 472 PPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQ 531
PP P P P QPPP PP A +P G A AA
Sbjct: 59 PPPAPQPPPPPQQQQPPPPPPPA-------------------PQPPQTRG-APAADDDKG 98
Query: 532 PPQVVANGPGSGPPPPAG---GAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAA 588
P Q++ P PPPPA GA + + PGG G+ + + A AG G
Sbjct: 99 PQQLLL--PPPPPPPPAAALDGAKADGLGGKGEPGGGPGELAPVGPDEKEKGAGAG-GEE 155
Query: 589 AAGSGPAG 596
G+G G
Sbjct: 156 KKGAGEGG 163
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 78.6 bits (192), Expect = 4e-14
Identities = 117/421 (27%), Positives = 140/421 (33%), Gaps = 134/421 (31%)
Query: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGA---GAGAKGPRSYPVIPV 385
L+A + S AA +GG G GGGG GGG G G G G+ A GA P S ++
Sbjct: 16 LAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMV-- 73
Query: 386 PSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAA 445
G + G G + H + + A L H A AAA A A + +G+A
Sbjct: 74 -QSDFMQGAMAASNG-GHMLSHAHQWVTA-----LPHAAAAAAAAAAAAVEASSPWSGSA 126
Query: 446 PKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPAL 505
G++G P + P QPPP PP + P +
Sbjct: 127 --VGMAGS------------------PQQPP---------QPPPPPP--------QGPDV 149
Query: 506 LRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGS 565
A D G A PP PP PPPP G PGG
Sbjct: 150 KGGAGRDDLHAGTAL--HHRGPPHLGPP----------PPPPHQG----------HPGGW 187
Query: 566 GGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFR 625
G +A + AAA A AAA AG + P P LL + G SA
Sbjct: 188 GAAAAA-------AAAAAAAAAAAHLPSMAGGQQPPPQ--SLLYSQPGGFTVNGMLSAPP 238
Query: 626 PVGGKDDAESLAKLHGASAGAPHSAQTHP----------HHHHHPHHHHHHHHPPQPPSP 675
GG G AG + HP HHH HHHH H HPP P
Sbjct: 239 GPGG----------GGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHP--- 285
Query: 676 LLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDE 735
HH P PHH G GG S D DE
Sbjct: 286 ---------------HHAQGP--------------PHHGG--GGGGAGPGLNSHDPHSDE 314
Query: 736 D 736
D
Sbjct: 315 D 315
Score = 48.1 bits (113), Expect = 5e-05
Identities = 49/154 (31%), Positives = 62/154 (40%), Gaps = 36/154 (23%)
Query: 255 PLSSVKAAAVAAAAAVAGG---GGLLGPHLLGAP--PPPPPPPPP--------------- 294
P ++ AAA AAAA A G +G + G+P PP PPPPPP
Sbjct: 102 PHAAAAAAAAAAAAVEASSPWSGSAVG--MAGSPQQPPQPPPPPPQGPDVKGGAGRDDLH 159
Query: 295 ---LAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGG------- 344
G PH P AA AAA+ +AAAA+ + + +GG
Sbjct: 160 AGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQS 219
Query: 345 ---AGTGGGGAGGGCVAGVGVGAGAGAGAGAGAK 375
+ GG G A G G G G GAG GA+
Sbjct: 220 LLYSQPGGFTVNGMLSAPPGPG-GGGGGAGGGAQ 252
Score = 33.5 bits (75), Expect = 1.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 803 APAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSS--PGSPVHH 860
A A A A + +S G G P PPPPPP P G G G+ +HH
Sbjct: 107 AAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHH 166
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 76.3 bits (186), Expect = 2e-13
Identities = 173/682 (25%), Positives = 206/682 (30%), Gaps = 121/682 (17%)
Query: 247 PGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHH 306
PGA + A +A A G G GP G PP P +G P A
Sbjct: 388 PGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGN-------SGEPGA-- 438
Query: 307 KRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGA 366
P D + E V A A G G G G G G
Sbjct: 439 --PGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFP 496
Query: 367 GAGAGAGAKGPRSYPVIPVPS--KGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKK 424
GA AG KGP P P+ KGS G + PG GL P + + K
Sbjct: 497 GADGVAGPKGPAGERGSPGPAGPKGSPGEAGR--PGEAGL-PGAKGLTGSPGSPGPDGKT 553
Query: 425 EDAGAAAEALGGAGAGGAGAAPKAGLSGLFWP---------AGRKDAFYPPFCMFWPPRT 475
G A + G GA +AG+ G P AG + PP +
Sbjct: 554 GPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAV-----G 608
Query: 476 PGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQV 535
P G Q PP P G GE F L P G G A G P +
Sbjct: 609 PAGKDGEAGAQGPPGPAGPAG-ERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDL 667
Query: 536 VANGPG--------------SGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVA 581
A GP GPP PAG G+ A PG G AG+ S
Sbjct: 668 GAPGPSGARGERGFPGERGVQGPPGPAGPRGANGA-----PGNDGAKGDAGAPGAPGSQG 722
Query: 582 AAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHG 641
A G G AG +P P G K GS GKD L G
Sbjct: 723 APGLQGMPGERGAAG--LPGPKGDRGDAGPKGADGS----------PGKDGVRGLTGPIG 770
Query: 642 --ASAGAP----HSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPP-----------QPD 684
AGAP S + P P PP P P +P
Sbjct: 771 PPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG 830
Query: 685 EPGSERHHPAPPPPPPPPPPPPLAQ--HPHHRGLLS----PGGTSCCYPS-------EDS 731
+ G++ P P P PP P+ P +G PG T +P
Sbjct: 831 DAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATG--FPGAAGRVGPPGP 888
Query: 732 SEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGR 791
S + EG K P GE GR + +G P G
Sbjct: 889 SGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGE------------VGPPGPPG------- 929
Query: 792 GPSEKGSSRDRAPAVAGAF--PLGLNSSR----LLQEDGKLGDPGSDLPPPPPPPLAPQK 845
EKGS PA A P G+ R L + G+ G PG LP P P
Sbjct: 930 PAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPG--LPGPSGEPGKQGP 987
Query: 846 ASGGGSSSPGSPVHHPSLEEQP 867
+ G P P+ P L P
Sbjct: 988 SGASGERGPPGPMGPPGLAGPP 1009
Score = 71.6 bits (174), Expect = 4e-12
Identities = 183/690 (26%), Positives = 217/690 (31%), Gaps = 110/690 (15%)
Query: 262 AAVAAAAAVAGGGGLLGPHLLGAPPPP--------PPPPPPLAELAGA-----PHAHHKR 308
A + A + G G GP PP P PP PP AG P
Sbjct: 532 AGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGE 591
Query: 309 PRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGA 368
P + V A A + +G AG G G G+ AG
Sbjct: 592 PGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGP 651
Query: 369 GAGAGAKGPRSYPV---IPVPSKGSFGGVLQKFPGCGGLF--PHPYTFPAAAAAFSLCHK 423
AG G + P P PS G+ G + FPG G+ P P A A
Sbjct: 652 PGEAGKPGEQGVPGDLGAPGPS-GARGE--RGFPGERGVQGPPGPAGPRGANGAPGNDGA 708
Query: 424 KEDAGAAAEALGGAGAGGAGAAP-KAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVP 482
K DAGA A G GA G P + G +GL P G + P +PG V
Sbjct: 709 KGDAGAPG-APGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGA----DGSPGKDGVR 763
Query: 483 TYLQP--PPQPPSALGCALGES-------PALLRQAFLDLAEPGGAAGSAEAAPPPGQPP 533
P PP P A G GES P R A D EPG G A A PPG
Sbjct: 764 GLTGPIGPPGPAGAPGDK-GESGPSGPAGPTGARGAPGDRGEPG-PPGPAGFAGPPGADG 821
Query: 534 QVVANG-PG-------SGPPPPAGGAGSRDALFE-------------SPPGGSGGDCSAG 572
Q A G PG +GPP PAG AG + PPG +G +AG
Sbjct: 822 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAG 881
Query: 573 ST-PPADSVAAA-----GAGAAAAGSGPAGSRVPA-------PHHPHLLEGRKAGGGSYH 619
PP S A G G GP G PA P P G K G+
Sbjct: 882 RVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADG 941
Query: 620 HSSAF-----RPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPS 674
+ A + + G+ L G + P PP P
Sbjct: 942 PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMG 1001
Query: 675 PLLLLPPQPDEPGSERHHPAPPPP----------------PPPPPPPPLAQHPHHRGLLS 718
P L P P E G E A P P PP P A P G +
Sbjct: 1002 PPGLAGP-PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGA--PGAPGPVG 1058
Query: 719 PGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLG 778
P G S + G + P G++ E G D + L G
Sbjct: 1059 PAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQG 1118
Query: 779 DPLVGGGRFLQGRGPSEKGSSRDRAPAVAGA----------FPLGLNSSRLLQED-GKLG 827
P G QG + + P AGA P+G R D G +G
Sbjct: 1119 PPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVG 1178
Query: 828 DPGSDLPPPPPPPLAPQKASGGGSSSPGSP 857
PG PP PP P P A S P P
Sbjct: 1179 PPG---PPGPPGPPGPPSAGFDFSFLPQPP 1205
Score = 63.5 bits (153), Expect = 1e-09
Identities = 165/702 (23%), Positives = 203/702 (28%), Gaps = 128/702 (18%)
Query: 237 GGSRKRALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLA 296
G + +R P P P S A A + G GL G G+P P PP
Sbjct: 506 GPAGERGSPGPAG-----PKGSPGEAGRPGEAGLPGAKGLTGSP--GSPGPDGKTGPP-- 556
Query: 297 ELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGC 356
P RP + +A V + G AG G G
Sbjct: 557 ----GPAGQDGRPGPPGPPGARGQAGV------------MGFPGPKGAAGEPGKAGERGV 600
Query: 357 VAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAA 416
G AG AGA+GP P P +G G PG GL P P P A
Sbjct: 601 PGPPGAVGPAGKDGEAGAQGPPG-PAGPAGERGEQGPAGS--PGFQGL-PGPAGPPGEAG 656
Query: 417 AFSLCHKKEDAGAAAEALGGAGAGGA----GAAPKAGLSGLFWPAGRKDAFYPPFCMFWP 472
K + G + LG G GA G + G+ G PAG
Sbjct: 657 ------KPGEQGVPGD-LGAPGPSGARGERGFPGERGVQGPPGPAG-------------- 695
Query: 473 PRTPGGLPVPTYLQPPPQPPSALGC--ALGESPALLRQAFLDLAEPGGAAGSAEAAPPPG 530
PR G P + P A G A G + L P G G A G
Sbjct: 696 PRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADG 755
Query: 531 QPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTP-----PADSVAAAGA 585
P + G +GP P G AG+ ES P G G A P P A A
Sbjct: 756 SPGKDGVRGL-TGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFA 814
Query: 586 GAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAG 645
G A P P G K G + P G + + +
Sbjct: 815 GPPGADGQPGAKGEPGD------AGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSA 868
Query: 646 APHSAQTHPHHHHH--PHHHHHHHHPPQPPSPL-------------------LLLPPQPD 684
P A P P + PP PP P + PP P
Sbjct: 869 GPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPP 928
Query: 685 EPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGT--SCCYPSEDSSEDEDDEEEEQ 742
P E+ P P P P RG++ G +P E ++
Sbjct: 929 GPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPS 988
Query: 743 EVDVEGHKP----------PEGEEEEE---------GRDPDDDEEEDEETEVLLGDPLVG 783
E P P GE E GRD + D G P
Sbjct: 989 GASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP 1048
Query: 784 GGRFLQGR-GPSEKGSSRDRAPAVAGAFPLGLNSSR----------LLQEDGKLGDPG-- 830
G G GP+ K R A P+G +R E G+ GD G
Sbjct: 1049 GAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK 1108
Query: 831 -----SDLPPPPPPPLAPQKASGGGSSSPGSPVHHPSLEEQP 867
S L PP PP +P + G+S P P P P
Sbjct: 1109 GHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAP 1150
Score = 62.0 bits (149), Expect = 3e-09
Identities = 165/650 (25%), Positives = 196/650 (30%), Gaps = 95/650 (14%)
Query: 268 AAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAA 327
A G G+ G L PP PP PP P G A +D+
Sbjct: 126 AGPPGRDGIPGQPGLPGPPGPPGPPGPPG--LGGNFAPQLSYGYDE-------------- 169
Query: 328 SLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIP-VP 386
+ +SV G +G G G G G GA GP P P
Sbjct: 170 ---KSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPP 226
Query: 387 SKGSFGGVLQKFPGCGGLFPHP-----YTFPAAAA--------AFS-LCHKKEDAGAAAE 432
K G K PG G P P A FS L K DAG A
Sbjct: 227 GKNGDDGEAGK-PGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGP 285
Query: 433 ALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRT-PGGLPVPTYLQPPPQP 491
G GA + G GL GR A P T G P PT PP
Sbjct: 286 KGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGF 345
Query: 492 PSALGCALGESPALLR-----QAFLDLAEPGGAAGSAEAAPPP---GQPPQVVANG-PG- 541
P A+G P R Q P G AG+A A P GQP ANG PG
Sbjct: 346 PGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGI 405
Query: 542 ------------SGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAA 589
SGP P G G + E GS GD A P V G A
Sbjct: 406 AGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEP--GPVGVQGPPGPA 463
Query: 590 AGSGPAGSR-VPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPH 648
G G+R P P G + G GS A G K A A
Sbjct: 464 GEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSP 523
Query: 649 SAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLA 708
P P P P PP P + P PP PP +
Sbjct: 524 GEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPP---GPAGQDGRPGPPGPPGARGQAGVM 580
Query: 709 QHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEE 768
P +G G + ++ E +G P G E G E+
Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERG------EQ 634
Query: 769 EDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRD-RAPAVAGAFPLGLNSSRLLQEDGKLG 827
+ G P G G+ P E+G D AP +GA G+ G
Sbjct: 635 GPAGSPGFQGLPGPAGPPGEAGK-PGEQGVPGDLGAPGPSGA-------------RGERG 680
Query: 828 DPGSDLPPPPPPPLAPQKASG--------GGSSSPGSPVHH--PSLEEQP 867
PG PP P P+ A+G G + +PG+P P L+ P
Sbjct: 681 FPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMP 730
Score = 58.2 bits (139), Expect = 5e-08
Identities = 150/624 (24%), Positives = 185/624 (29%), Gaps = 143/624 (22%)
Query: 267 AAAVAGGGGLLGPHLLGAPPPPPPP--PPPLAELAGAP-HAHHKRPRFDDDDDSLQEAAV 323
A AG G G PP P P PP GA A + PR + ++
Sbjct: 315 APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVR---- 370
Query: 324 VAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPR--SYP 381
A A+G AG G G G AGA GA+GP P
Sbjct: 371 -------GEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGP 423
Query: 382 VIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAE--------A 433
P KG+ G PG G K D GA E
Sbjct: 424 GGPPGPKGNSGE-----PGAPG-------------------SKGDTGAKGEPGPVGVQGP 459
Query: 434 LGGAG-AGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPG--GLPVPTYLQPPPQ 490
G AG G GA + G +GL P G + PG G P + P
Sbjct: 460 PGPAGEEGKRGARGEPGPTGLPGPPGERGG-------------PGSRGFPGADGVAGPKG 506
Query: 491 PPSALGCALGESPALLRQAFLDLAEPG--------GAAGSAEAAPPPGQ--PPQVVANGP 540
P G PA + + + PG G GS + P G+ PP
Sbjct: 507 PAGERG---SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDG 563
Query: 541 GSGPPPPAGGAGSRDAL-FESPPGGSGGDCSAGS---TPPADSVAAAGAGAAAAGSGPAG 596
GPP P G G + F P G +G AG P +V AG A GP G
Sbjct: 564 RPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPG 623
Query: 597 SRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHH 656
PA G + G S F+ + G AG P A
Sbjct: 624 PAGPAGE-----RGEQGPAG----SPGFQGLPG-------------PAGPPGEA------ 655
Query: 657 HHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAP---PPPPPPPPPPPLAQHPHH 713
P + P L P P ER P PP P P P +
Sbjct: 656 ----------GKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGN 705
Query: 714 RGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEET 773
G G S+ + + E + G K G+ +G D ++
Sbjct: 706 DGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGL 765
Query: 774 EVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDL 833
+G P G P +KG S PA G +R G GD G
Sbjct: 766 TGPIGPPGPAG-------APGDKGESGPSGPA-------GPTGAR-----GAPGDRGEPG 806
Query: 834 PPPPPPPLAPQKASG--GGSSSPG 855
PP P P A G G PG
Sbjct: 807 PPGPAGFAGPPGADGQPGAKGEPG 830
Score = 56.2 bits (134), Expect = 2e-07
Identities = 125/518 (24%), Positives = 157/518 (30%), Gaps = 119/518 (22%)
Query: 271 AGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLS 330
AG G GP P P PP P+ + GAP A R A A
Sbjct: 832 AGAKGDAGPP---GPAGPAGPPGPIGNV-GAPGAKGARG----------SAGPPGATGFP 877
Query: 331 AAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGS 390
AA + SG AG G G G G G G GP P P KGS
Sbjct: 878 GAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPG-PAGEKGS 936
Query: 391 FGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGL 450
PG G PA A G G A + G+
Sbjct: 937 --------PGADG--------PAGAPGTP--------------------GPQGIAGQRGV 960
Query: 451 SGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAF 510
GL P R + +P GLP P+ +P Q PS G
Sbjct: 961 VGL--PGQRGERGFP------------GLPGPSG-EPGKQGPSGASGERG---------- 995
Query: 511 LDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFES----PPGGSG 566
P G G A PPG+ + A G G P G G++ E+ PPG G
Sbjct: 996 -----PPGPMGPPGLAGPPGESGREGAPG-AEGSPGRDGSPGAKGDRGETGPAGPPGAPG 1049
Query: 567 GDCSAGSTPPADSV---AAAGAGAAAAGSGPAGSRVPA----PHHPHLLEGRKAGGGSYH 619
+ G PA G A GP G+R PA P G + G
Sbjct: 1050 APGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKG 1109
Query: 620 HSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLL 679
H G S + + A P + P P + P +
Sbjct: 1110 HRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGP------IG 1163
Query: 680 PPQPDEPGSERHHPAPPPPPPPPPPPP----------LAQHPHHRGLLSPGGTSCCYPSE 729
PP P + PP PP PP PP L Q P + GG Y ++
Sbjct: 1164 PPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKA--HDGGR--YYRAD 1219
Query: 730 DSSEDEDDEEEEQEV------DVEGHKPPEGEEEEEGR 761
D++ D + E +E + PEG + R
Sbjct: 1220 DANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPAR 1257
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 76.3 bits (186), Expect = 2e-13
Identities = 169/683 (24%), Positives = 215/683 (31%), Gaps = 171/683 (25%)
Query: 243 ALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGP----HLLGAPPPPPPPPPPLAEL 298
A+P G PA P +AA A G GG GP H P A
Sbjct: 158 AVPGGGGGPAAVP--EFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAA 215
Query: 299 AGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVA 358
AGAP + D LQ + S S A GG G GGGG GG
Sbjct: 216 AGAPGSM----------DPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGG 265
Query: 359 GVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAF 418
G G GAGAG GAGAGA + G GG GG ++A
Sbjct: 266 GGGGGAGAG-GAGAGAVAAAAAAAAAAAGGGGGGGY-------GG---------SSAGYG 308
Query: 419 SLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFW--------PAGRKDAFYPPFCMF 470
L ++ G GG GA A +G F P+G
Sbjct: 309 VLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSP 368
Query: 471 WPPRTPGGLPVPTYLQP--PPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPP 528
P G P Y P PP PPS Q A G AAG +AA
Sbjct: 369 SPMMRSYGGSYPEYSSPSAPPPPPS--------------QPQSQAAAAGAAAGGQQAAAG 414
Query: 529 PGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAA 588
G + A + P A S A+ PG + G S GS P D +
Sbjct: 415 MGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGR-SQGS--PMDPMVMKRPQLY 471
Query: 589 AAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFR-PVGGKDDAESLAKLHGASAGAP 647
GS P + +P GGSY R P+G + G + GA
Sbjct: 472 GMGSNPHSQPQQSSPYP---------GGSYGPPGPQRYPIG----------IQGRTPGAM 512
Query: 648 HSAQTHPHHHHHPHHHHHHHHPPQPPS-------PLLLLPPQPDEPG-----SERHHPAP 695
Q +P Q S L+PPQ + G + P
Sbjct: 513 AGMQ----------------YPQQQDSGDATWKETFWLMPPQYGQQGVSGYCQQGQQPYY 556
Query: 696 PPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEG- 754
P PP PP AQ+ PS+ + ++ QE +PP
Sbjct: 557 SQQPQPPHLPPQAQY---------------LPSQSQQRYQPQQDMSQEGYGTRSQPPLAP 601
Query: 755 -----------EEEEEGRDPDDDEEEDE---ETEVLLGDPL-VGGGRFLQG--RGPSEKG 797
++E PD D+ TE L + G QG P++
Sbjct: 602 GKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSP 661
Query: 798 SSRDRAPAVAG----------AFPLGLNSSRLLQEDGKLGD---PGSDLPPPPPPPLAPQ 844
S +P ++ P+G N SR G + PGS +PP PP
Sbjct: 662 FSPHASPHLSSIPGGPSPSPVGSPVGSNQSR----SGPISPASIPGSQMPPQPP------ 711
Query: 845 KASGGGSSSPGSPVHHPSLEEQP 867
GS S S HP+L + P
Sbjct: 712 -----GSQSESS--SHPALSQSP 727
Score = 57.0 bits (136), Expect = 1e-07
Identities = 96/353 (27%), Positives = 115/353 (32%), Gaps = 59/353 (16%)
Query: 371 GAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAA 430
GAG P+ P + P G K GG P L K D A
Sbjct: 84 GAGGGAPQPGPDMEQPQHGG-----AKDSAAGGQADPPGP--------PLLSKPGDEDDA 130
Query: 431 AEALGGAGAGGAGAAPKAGLSGLFWP------AGRKDAFYPPFCMFWPPRTP-----GGL 479
+G AGG P G G P G A P F ++ P GG
Sbjct: 131 PPKMGEP-AGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGR 189
Query: 480 PVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPP--GQPPQVVA 537
P + Q Q +G S A GA GS + G P
Sbjct: 190 AGPCFDQHGGQQSPGMGMMHSASAAA-----------AGAPGSMDPLQNSHEGYPNSQCN 238
Query: 538 NGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAA--GSGPA 595
+ PG P GG G GG GG + A +VAAA A AAAA G G
Sbjct: 239 HYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGG 298
Query: 596 GSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPH 655
G + + L R+ GGG P GG A SL+K A+ A Q
Sbjct: 299 GYGGSSAGYGVLSSPRQQGGG-----MMMGPGGG--GAASLSK--AAAGSAAGGFQRFAG 349
Query: 656 HHHHPHHHHHHHHPPQPPSPLLLLPPQP---DEPGSERHHPAPPPPPPPPPPP 705
+ HP P LL P P GS + +P PPPPP P
Sbjct: 350 QNQHP-------SGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQP 395
Score = 43.1 bits (100), Expect = 0.002
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 638 KLHGASAGAPHSAQTHPHHHHHPHHHH----HHHHPPQ 671
K G + AP Q H HHH H HHHH HHHH Q
Sbjct: 12 KTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQ 49
Score = 32.0 bits (71), Expect = 3.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 726 YPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETE 774
Y D S+ D ++ D + G+EEE+ DDDEE++E+ E
Sbjct: 1643 YEVGDPSQKALDHNAARKDDSQSLADDSGKEEEDAECIDDDEEDEEDEE 1691
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 75.9 bits (185), Expect = 2e-13
Identities = 161/672 (23%), Positives = 196/672 (29%), Gaps = 183/672 (27%)
Query: 271 AGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLS 330
+G G GP +G+ P PP P D + E VV A +
Sbjct: 597 SGAAGPTGP--IGSRGPSGPPGP---------------------DGNKGEPGVVGAVGTA 633
Query: 331 AAAASLSVAAASGGAGTGGG-------------------GAGG--GCVAGVGVGAGAGAG 369
+ + G AG GG GA G G V G G
Sbjct: 634 GPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDR 693
Query: 370 AGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGA 429
AGA GP P P S G G V G P+ + PA AA + A
Sbjct: 694 GEAGAAGPAG-PAGPRGSPGERGEV-------GPAGPNGFAGPAGAAGQPGAKGERGAKG 745
Query: 430 AAEALGGAG-AGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPG-GLPVPTYLQP 487
G G G GAA AG +G PAG + PP +P G P P+ +
Sbjct: 746 PKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISG 805
Query: 488 PPQPPSALGCA--------------LGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQP- 532
PP PP G GE A+ F P G AG+A PPG P
Sbjct: 806 PPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAG---PPGTPG 862
Query: 533 PQVVANGPG----------SGPPPPAGGAGSRDAL-FESPPGGSGGDCSAGSTPPADSVA 581
PQ + PG G P AG G L PPG G + GS +
Sbjct: 863 PQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPG 922
Query: 582 AAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHG 641
AG GP G +G+ G + PVG
Sbjct: 923 EAGRDGNPGNDGPPGR-----------DGQPGHKGERGYPGNIGPVG------------- 958
Query: 642 ASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPL----LLLPPQPDEPGSERHHPAPPP 697
+AGAP PH P H + P P+ + P P P R P
Sbjct: 959 -AAGAPG-----PHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPG 1012
Query: 698 PPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEE 757
P P L H +GL G D+ V G + P G
Sbjct: 1013 EKGPRGLPGLKGHNGLQGLPGIAG------------HHGDQGAPGSVGPAGPRGPAGPSG 1060
Query: 758 EEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSS 817
G+D R P G P G+
Sbjct: 1061 PAGKD------------------------------------GRTGHPGTVG--PAGIR-- 1080
Query: 818 RLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSS--------SPGSPVHHPSLEEQPSY 869
G G G PP PP P P SGGG P PSL +
Sbjct: 1081 ------GPQGHQGPAGPPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSAPSLRPKDYE 1134
Query: 870 KDSQKTKENNQV 881
D+ NNQ+
Sbjct: 1135 VDATLKSLNNQI 1146
Score = 57.8 bits (138), Expect = 6e-08
Identities = 152/571 (26%), Positives = 186/571 (32%), Gaps = 123/571 (21%)
Query: 341 ASGGAGTGGG-GAGG--GCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQK 397
A G GT G GA G G VG AGA G+ GP P P+ S G G
Sbjct: 203 APGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVG-PAGPIGSAGPPG----- 256
Query: 398 FPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAG-AGGAGAAPKAGLSGLFWP 456
FPG G K + GA +G AG AG AG + GL GL P
Sbjct: 257 FPGAPG-------------------PKGEIGA----VGNAGPAGPAGPRGEVGLPGLSGP 293
Query: 457 AGRKDAFYPPFCMFWPPRTPG-----------GLPVPTYLQPPPQPPSALGCALGESPAL 505
G PP PG GLP P P G +G + A
Sbjct: 294 VG-------------PPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPG-PVGAAGAT 339
Query: 506 LRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSR----DALFESP 561
+ + P G+ G + PG GP GPP P+G G R +A P
Sbjct: 340 GARGLVGEPGPAGSKGESGNKGEPGSA------GP-QGPPGPSGEEGKRGPNGEAGSAGP 392
Query: 562 PGGSGGDCSAGS--TPPADSVAAA-GAGAAAAGSGPAGSRVP-----APHHPHLLEGRKA 613
PG G S GS P AD A G + SGPAG R P P P L+ R
Sbjct: 393 PGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGL 452
Query: 614 GGGSYHHSSAFRPVGGKDDAESLAKLHGASAG-APHSAQTHPHHHHHPHHHHHHHHP-PQ 671
G + A GK+ L + G P A+ P + P P
Sbjct: 453 PGSPGNIGPA-----GKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKN 507
Query: 672 PPSPLLLLPPQPDEPGSERHHPAPPPPPPP----------PPPPPLAQHPHHRGLLSPGG 721
L PG + ++ A PP P PP PP Q GL P G
Sbjct: 508 GDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQ-----GLPGPSG 562
Query: 722 TSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEG-------RDPDDDEEEDEETE 774
+ + G + P GE G R P D
Sbjct: 563 PAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNK- 621
Query: 775 VLLGDPLVGGGRFLQG-RGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDL 833
G+P V G G GPS R A G G R G++G+PG D
Sbjct: 622 ---GEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLR-----GEIGNPGRDG 673
Query: 834 PPPPPPPL---APQKASG----GGSSSPGSP 857
P + P A+G G++ P P
Sbjct: 674 ARGAPGAVGAPGPAGATGDRGEAGAAGPAGP 704
Score = 50.1 bits (118), Expect = 1e-05
Identities = 140/552 (25%), Positives = 165/552 (29%), Gaps = 89/552 (16%)
Query: 341 ASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSY--------PVIPVPSKGSFG 392
A G AG G G V G AG GA GP+ P P +G G
Sbjct: 227 APGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVG 286
Query: 393 GVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAG----AAAEALGG-----AGAGGAG 443
PG G P P A L K AG A A L G G AG
Sbjct: 287 -----LPGLSG----PVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAG 337
Query: 444 AAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPG--GLPVPTYLQPPPQPPSALGCALGE 501
A GL G PAG K P + G G P P+ + P G A
Sbjct: 338 ATGARGLVGEPGPAGSKGESGNK----GEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPP 393
Query: 502 SPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGS--GPPPPAGGAGSRDALFE 559
P LR + PG A G A PPG A+GP GP AG G +
Sbjct: 394 GPPGLRGSPGSRGLPG-ADGRAGVMGPPGSRG---ASGPAGVRGPNGDAGRPGEPGLM-- 447
Query: 560 SPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSR-------VPAPHHPHLLEGRK 612
P G G + G V G GPAG+R P P P G
Sbjct: 448 GPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGP---TGDP 504
Query: 613 AGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQP 672
G H+ LA GA ++ P PP P
Sbjct: 505 GKNGDKGHA-------------GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGP 551
Query: 673 PSPLLLLPP--------QPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSC 724
P L P +P E G P P P P P G P G
Sbjct: 552 PGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGP----PGESGAAGPTGPIG 607
Query: 725 CYPSEDSSEDEDDEEEEQEVDVEGHKPPE------GEEEEEGRDPDDDEEEDEETEVLLG 778
+ ++ E V G P GE G E+ + +G
Sbjct: 608 SRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIG 667
Query: 779 DPLVGGGRFLQGR--GPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPP 836
+P G R G P G++ DR A A A P G R G G+ G P
Sbjct: 668 NPGRDGARGAPGAVGAPGPAGATGDRGEAGA-AGPAGPAGPR-----GSPGERGEVGPAG 721
Query: 837 PPPPLAPQKASG 848
P P A+G
Sbjct: 722 PNGFAGPAGAAG 733
Score = 50.1 bits (118), Expect = 1e-05
Identities = 79/298 (26%), Positives = 100/298 (33%), Gaps = 50/298 (16%)
Query: 338 VAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQK 397
+A A G G G G GV G G G GP + +P PS G G V +
Sbjct: 515 LAGARGAPGPDGNNGAQGPPGPQGVQGGKGE---QGPPGPPGFQGLPGPS-GPAGEVGK- 569
Query: 398 FPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEA--LGGAGAGGA----GAAPKAGLS 451
PG GL + P A ++GAA +G G G G + G+
Sbjct: 570 -PGERGLHGE-FGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVV 627
Query: 452 GLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFL 511
G AG P P GLP P G P L
Sbjct: 628 GAVGTAG--------------PSGPSGLPGERGAAGIPGGKGEKG-----EPGLRG---- 664
Query: 512 DLAEPG--------GAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPG 563
++ PG GA G+ A G + A GP +GP P G G R + + P
Sbjct: 665 EIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGP-AGPAGPRGSPGERGEVGPAGPN 723
Query: 564 GSGGDCSAGSTPPADSVAAA----GAGAAAAGSGPAGSRVPA-PHHPHLLEGRKAGGG 616
G G A P A A G +GP G+ PA P+ P G + GG
Sbjct: 724 GFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGG 781
Score = 40.4 bits (93), Expect = 0.011
Identities = 92/349 (26%), Positives = 105/349 (30%), Gaps = 67/349 (19%)
Query: 272 GGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSA 331
G G GP G P PP PP PP L G AA +
Sbjct: 51 GRDGEDGP--TGPPGPPGPPGPP--GLGG------------------NFAAQYDGKGVGL 88
Query: 332 AAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIP------- 384
+ + G G G G G G AGA+GP P
Sbjct: 89 GPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPG 148
Query: 385 VPSKGSFGGVL-----QKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGA 439
P + GV+ + FPG GL F L K GA G GA
Sbjct: 149 KPGRPGERGVVGPQGARGFPGTPGL----PGFKGIRGHNGLDGLKGQPGAPG-VKGEPGA 203
Query: 440 GGAGAAP-KAGLSGLFWPAGRKDAFYPPFCMFWPPRT-PGGLPVPTYLQPPPQPPSALGC 497
G P + G GL GR A P P G P PP P A G
Sbjct: 204 PGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPG- 262
Query: 498 ALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPG-SGPPPPAGGAGSRDA 556
GE GA G+A A P G P+ PG SGP P G G+
Sbjct: 263 PKGEI---------------GAVGNAGPAGPAG--PRGEVGLPGLSGPVGPPGNPGANGL 305
Query: 557 LFESPPGGSGGDCSAGSTP-------PADSVAAAGAGAAAAGSGPAGSR 598
G G A P P + A GA GPAGS+
Sbjct: 306 TGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSK 354
Score = 37.4 bits (85), Expect = 0.090
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 16/102 (15%)
Query: 516 PGGAAGSAEAAPPPGQPPQVVANGPGS-----GPPPPAGGAGSRDALFESPP-------- 562
P G G PPG P + +GP GPP P G G+ A ++
Sbjct: 34 PAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPM 93
Query: 563 ---GGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPA 601
G G +AG+ P AG +GPAG+R PA
Sbjct: 94 GLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPA 135
Score = 34.7 bits (78), Expect = 0.59
Identities = 56/217 (25%), Positives = 73/217 (33%), Gaps = 40/217 (18%)
Query: 680 PPQPDEPGSERHHPAPPPPPPPPPPPPL-----AQH--------PHHRGLLSPGGT--SC 724
PP P E PP PP PP PP L AQ+ P GL+ P G +
Sbjct: 46 PPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAA 105
Query: 725 CYPSEDSSEDEDDEE-EEQEVDVEGHKPPEGEEEEEGRD--PDDDEEEDEETEV------ 775
P + E E + G + P G + G D P E V
Sbjct: 106 GAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGAR 165
Query: 776 -LLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAG--------AFPLGLNSSRLLQEDGKL 826
G P + G + ++G + + AP V G P + L E G++
Sbjct: 166 GFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRV 225
Query: 827 GDP------GSDLPPPPPPPLAPQKASGGGSSSPGSP 857
G P GSD P P P S G PG+P
Sbjct: 226 GAPGPAGARGSDGSVGPVGPAGP-IGSAGPPGFPGAP 261
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 74.7 bits (182), Expect = 5e-13
Identities = 139/560 (24%), Positives = 178/560 (31%), Gaps = 127/560 (22%)
Query: 342 SGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGC 401
+GG G GGGG GGG G G G GAGAG GAGA + + G GG G
Sbjct: 248 AGGGGGGGGGGGGGS-GGGGGGGGAGAG-GAGAGAVAAAAAAAAAAAGGGGG-----GGY 300
Query: 402 GGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLF------- 454
GG ++A L ++ G GG GA A +G F
Sbjct: 301 GG---------SSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQN 351
Query: 455 -WPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQP--PPQPPSALGCALGESPALLRQAFL 511
P+G P G P Y P PP PPS Q
Sbjct: 352 QHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPS--------------QPQS 397
Query: 512 DLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSA 571
A G AAG +AA G + A + P A S A+ PG + G S
Sbjct: 398 QAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGR-SQ 456
Query: 572 GSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFR-PVGGK 630
GS P D + GS P + +P GGSY R P+G +
Sbjct: 457 GS--PMDPMVMKRPQLYGMGSNPHSQPQQSSPYP---------GGSYGPPGPQRYPIGIQ 505
Query: 631 DDAESLAKLHGASAGAPHSAQTHPHHHH--------HPHHHHHHHHPPQPPSPLLLLPPQ 682
+ GA AG + Q P + ++ PQPP LPPQ
Sbjct: 506 ------GRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYSQQPQPPH----LPPQ 555
Query: 683 PD---EPGSERHHPAPPPPPP---PPPPPPLAQ-HPHHRGL-----LSPGGTSCCYPSED 730
+R+ P PPLA P+H L P S D
Sbjct: 556 AQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSID 615
Query: 731 SSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQG 790
+ V G +G++ + P + + G
Sbjct: 616 DLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSI------------PGG 663
Query: 791 RGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGD---PGSDLPPPPPPPLAPQKAS 847
PS GS P+G N SR G + PGS +PP PP
Sbjct: 664 PSPSPVGS------------PVGSNQSR----SGPISPASIPGSQMPPQPP--------- 698
Query: 848 GGGSSSPGSPVHHPSLEEQP 867
GS S S HP+L + P
Sbjct: 699 --GSQSESS--SHPALSQSP 714
Score = 70.1 bits (170), Expect = 1e-11
Identities = 160/664 (24%), Positives = 206/664 (31%), Gaps = 135/664 (20%)
Query: 243 ALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGP----HLLGAPPPPPPPPPPLAEL 298
A+P G PA P +AA A G GG GP H P A
Sbjct: 158 AVPGGGGGPAAVP--EFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAA 215
Query: 299 AGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVA 358
AGAP + D LQ + S S A GG G GGGG GG
Sbjct: 216 AGAPGSM----------DPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGG 265
Query: 359 GVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAF 418
G G GAGAG GAGAGA + G GG GG ++A
Sbjct: 266 GGGGGAGAG-GAGAGAVAAAAAAAAAAAGGGGGGGY-------GG---------SSAGYG 308
Query: 419 SLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFW--------PAGRKDAFYPPFCMF 470
L ++ G GG GA A +G F P+G
Sbjct: 309 VLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSP 368
Query: 471 WPPRTPGGLPVPTYLQP--PPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPP 528
P G P Y P PP PPS Q A G AAG +AA
Sbjct: 369 SPMMRSYGGSYPEYSSPSAPPPPPS--------------QPQSQAAAAGAAAGGQQAAAG 414
Query: 529 PGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAA 588
G + A + P A S A+ PG + G S GS P D +
Sbjct: 415 MGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGR-SQGS--PMDPMVMKRPQLY 471
Query: 589 AAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFR-PVGGKDDAESLAKLHGASAGAP 647
GS P + +P GGSY R P+G + G + GA
Sbjct: 472 GMGSNPHSQPQQSSPYP---------GGSYGPPGPQRYPIG----------IQGRTPGAM 512
Query: 648 HSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPG-----SERHHPAPPPPPPPP 702
Q +P Q +PPQ + G + P P PP
Sbjct: 513 AGMQ----------------YPQQQ------MPPQYGQQGVSGYCQQGQQPYYSQQPQPP 550
Query: 703 PPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRD 762
PP AQ+ PS+ + ++ QE +PP + D
Sbjct: 551 HLPPQAQY---------------LPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHED 595
Query: 763 PDDDEEEDEETEVLLG---DPLVGGGRFLQGRGPSEKGSSRDRAPAVAGA-FPLGLNSSR 818
+ ++E + L D L G S GS+ + A P ++S
Sbjct: 596 LNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASP 655
Query: 819 LLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKEN 878
L PG P P P+ S S P SP P + P SQ +
Sbjct: 656 HLSSI-----PGG----PSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSS 706
Query: 879 NQVI 882
+ +
Sbjct: 707 HPAL 710
Score = 57.0 bits (136), Expect = 1e-07
Identities = 96/353 (27%), Positives = 115/353 (32%), Gaps = 59/353 (16%)
Query: 371 GAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAA 430
GAG P+ P + P G K GG P L K D A
Sbjct: 84 GAGGGAPQPGPDMEQPQHGG-----AKDSAAGGQADPPGP--------PLLSKPGDEDDA 130
Query: 431 AEALGGAGAGGAGAAPKAGLSGLFWP------AGRKDAFYPPFCMFWPPRTP-----GGL 479
+G AGG P G G P G A P F ++ P GG
Sbjct: 131 PPKMGEP-AGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGR 189
Query: 480 PVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPP--GQPPQVVA 537
P + Q Q +G S A GA GS + G P
Sbjct: 190 AGPCFDQHGGQQSPGMGMMHSASAAA-----------AGAPGSMDPLQNSHEGYPNSQCN 238
Query: 538 NGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAA--GSGPA 595
+ PG P GG G GG GG + A +VAAA A AAAA G G
Sbjct: 239 HYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGG 298
Query: 596 GSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPH 655
G + + L R+ GGG P GG A SL+K A+ A Q
Sbjct: 299 GYGGSSAGYGVLSSPRQQGGG-----MMMGPGGG--GAASLSK--AAAGSAAGGFQRFAG 349
Query: 656 HHHHPHHHHHHHHPPQPPSPLLLLPPQP---DEPGSERHHPAPPPPPPPPPPP 705
+ HP P LL P P GS + +P PPPPP P
Sbjct: 350 QNQHP-------SGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQP 395
Score = 43.1 bits (100), Expect = 0.002
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 638 KLHGASAGAPHSAQTHPHHHHHPHHHH----HHHHPPQ 671
K G + AP Q H HHH H HHHH HHHH Q
Sbjct: 12 KTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQ 49
Score = 32.0 bits (71), Expect = 3.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 726 YPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETE 774
Y D S+ D ++ D + G+EEE+ DDDEE++E+ E
Sbjct: 1683 YEVGDPSQKALDHNAARKDDSQSLADDSGKEEEDAECIDDDEEDEEDEE 1731
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 74.7 bits (182), Expect = 5e-13
Identities = 139/560 (24%), Positives = 178/560 (31%), Gaps = 127/560 (22%)
Query: 342 SGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGC 401
+GG G GGGG GGG G G G GAGAG GAGA + + G GG G
Sbjct: 248 AGGGGGGGGGGGGGS-GGGGGGGGAGAG-GAGAGAVAAAAAAAAAAAGGGGG-----GGY 300
Query: 402 GGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLF------- 454
GG ++A L ++ G GG GA A +G F
Sbjct: 301 GG---------SSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQN 351
Query: 455 -WPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQP--PPQPPSALGCALGESPALLRQAFL 511
P+G P G P Y P PP PPS Q
Sbjct: 352 QHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPS--------------QPQS 397
Query: 512 DLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSA 571
A G AAG +AA G + A + P A S A+ PG + G S
Sbjct: 398 QAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGR-SQ 456
Query: 572 GSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFR-PVGGK 630
GS P D + GS P + +P GGSY R P+G +
Sbjct: 457 GS--PMDPMVMKRPQLYGMGSNPHSQPQQSSPYP---------GGSYGPPGPQRYPIGIQ 505
Query: 631 DDAESLAKLHGASAGAPHSAQTHPHHHH--------HPHHHHHHHHPPQPPSPLLLLPPQ 682
+ GA AG + Q P + ++ PQPP LPPQ
Sbjct: 506 ------GRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYSQQPQPPH----LPPQ 555
Query: 683 PD---EPGSERHHPAPPPPPP---PPPPPPLAQ-HPHHRGL-----LSPGGTSCCYPSED 730
+R+ P PPLA P+H L P S D
Sbjct: 556 AQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSID 615
Query: 731 SSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQG 790
+ V G +G++ + P + + G
Sbjct: 616 DLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSI------------PGG 663
Query: 791 RGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGD---PGSDLPPPPPPPLAPQKAS 847
PS GS P+G N SR G + PGS +PP PP
Sbjct: 664 PSPSPVGS------------PVGSNQSR----SGPISPASIPGSQMPPQPP--------- 698
Query: 848 GGGSSSPGSPVHHPSLEEQP 867
GS S S HP+L + P
Sbjct: 699 --GSQSESS--SHPALSQSP 714
Score = 70.1 bits (170), Expect = 1e-11
Identities = 160/664 (24%), Positives = 206/664 (31%), Gaps = 135/664 (20%)
Query: 243 ALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGP----HLLGAPPPPPPPPPPLAEL 298
A+P G PA P +AA A G GG GP H P A
Sbjct: 158 AVPGGGGGPAAVP--EFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAA 215
Query: 299 AGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVA 358
AGAP + D LQ + S S A GG G GGGG GG
Sbjct: 216 AGAPGSM----------DPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGG 265
Query: 359 GVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAF 418
G G GAGAG GAGAGA + G GG GG ++A
Sbjct: 266 GGGGGAGAG-GAGAGAVAAAAAAAAAAAGGGGGGGY-------GG---------SSAGYG 308
Query: 419 SLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFW--------PAGRKDAFYPPFCMF 470
L ++ G GG GA A +G F P+G
Sbjct: 309 VLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSP 368
Query: 471 WPPRTPGGLPVPTYLQP--PPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPP 528
P G P Y P PP PPS Q A G AAG +AA
Sbjct: 369 SPMMRSYGGSYPEYSSPSAPPPPPS--------------QPQSQAAAAGAAAGGQQAAAG 414
Query: 529 PGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAA 588
G + A + P A S A+ PG + G S GS P D +
Sbjct: 415 MGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGR-SQGS--PMDPMVMKRPQLY 471
Query: 589 AAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFR-PVGGKDDAESLAKLHGASAGAP 647
GS P + +P GGSY R P+G + G + GA
Sbjct: 472 GMGSNPHSQPQQSSPYP---------GGSYGPPGPQRYPIG----------IQGRTPGAM 512
Query: 648 HSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPG-----SERHHPAPPPPPPPP 702
Q +P Q +PPQ + G + P P PP
Sbjct: 513 AGMQ----------------YPQQQ------MPPQYGQQGVSGYCQQGQQPYYSQQPQPP 550
Query: 703 PPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRD 762
PP AQ+ PS+ + ++ QE +PP + D
Sbjct: 551 HLPPQAQY---------------LPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHED 595
Query: 763 PDDDEEEDEETEVLLG---DPLVGGGRFLQGRGPSEKGSSRDRAPAVAGA-FPLGLNSSR 818
+ ++E + L D L G S GS+ + A P ++S
Sbjct: 596 LNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASP 655
Query: 819 LLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKEN 878
L PG P P P+ S S P SP P + P SQ +
Sbjct: 656 HLSSI-----PGG----PSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSS 706
Query: 879 NQVI 882
+ +
Sbjct: 707 HPAL 710
Score = 57.0 bits (136), Expect = 1e-07
Identities = 96/353 (27%), Positives = 115/353 (32%), Gaps = 59/353 (16%)
Query: 371 GAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAA 430
GAG P+ P + P G K GG P L K D A
Sbjct: 84 GAGGGAPQPGPDMEQPQHGG-----AKDSAAGGQADPPGP--------PLLSKPGDEDDA 130
Query: 431 AEALGGAGAGGAGAAPKAGLSGLFWP------AGRKDAFYPPFCMFWPPRTP-----GGL 479
+G AGG P G G P G A P F ++ P GG
Sbjct: 131 PPKMGEP-AGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGR 189
Query: 480 PVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPP--GQPPQVVA 537
P + Q Q +G S A GA GS + G P
Sbjct: 190 AGPCFDQHGGQQSPGMGMMHSASAAA-----------AGAPGSMDPLQNSHEGYPNSQCN 238
Query: 538 NGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAA--GSGPA 595
+ PG P GG G GG GG + A +VAAA A AAAA G G
Sbjct: 239 HYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGG 298
Query: 596 GSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPH 655
G + + L R+ GGG P GG A SL+K A+ A Q
Sbjct: 299 GYGGSSAGYGVLSSPRQQGGG-----MMMGPGGG--GAASLSK--AAAGSAAGGFQRFAG 349
Query: 656 HHHHPHHHHHHHHPPQPPSPLLLLPPQP---DEPGSERHHPAPPPPPPPPPPP 705
+ HP P LL P P GS + +P PPPPP P
Sbjct: 350 QNQHP-------SGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQP 395
Score = 43.1 bits (100), Expect = 0.002
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 638 KLHGASAGAPHSAQTHPHHHHHPHHHH----HHHHPPQ 671
K G + AP Q H HHH H HHHH HHHH Q
Sbjct: 12 KTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQ 49
Score = 32.0 bits (71), Expect = 3.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 726 YPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETE 774
Y D S+ D ++ D + G+EEE+ DDDEE++E+ E
Sbjct: 1630 YEVGDPSQKALDHNAARKDDSQSLADDSGKEEEDAECIDDDEEDEEDEE 1678
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 74.3 bits (181), Expect = 7e-13
Identities = 94/319 (29%), Positives = 107/319 (33%), Gaps = 106/319 (33%)
Query: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSK 388
L A ASL GG G GGGGAG G G AG GA +G + P+ P
Sbjct: 46 LVAGMASL----LDGGGGGGGGGAG-------GAGGAGSAGGGADFRGELAGPLHPAM-- 92
Query: 389 GSFGGVLQKFPGCGG----LFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGA 444
G+ + PG GG L P + P AA A K AAA A+ GA G
Sbjct: 93 ----GMACEAPGLGGTYTTLTPLQHLPPLAAVA-----DKFHQHAAAAAVAGAHGG---- 139
Query: 445 APKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPA 504
P P P PPP PP L ++ S
Sbjct: 140 ------------------------------HPHAHPHPAAAPPPPPPPQRLAASVSGSFT 169
Query: 505 LLRQAFLDLAEPGGAAG-------------------------SAEAAPPPGQPPQVVANG 539
L+R LA G G A PPP PP + A G
Sbjct: 170 LMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYG 229
Query: 540 P-----GSGPPPPAGG-------AGSRDALFESPPGGSGGDCS--------AGSTPPADS 579
P G PPA + DAL PGG GG S AG P
Sbjct: 230 PPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGG 289
Query: 580 VAAAGA-GAAAAGSGPAGS 597
+AAAGA G G GP GS
Sbjct: 290 LAAAGAHGPHGGGGGPGGS 308
Score = 67.8 bits (164), Expect = 6e-11
Identities = 61/170 (35%), Positives = 70/170 (41%), Gaps = 39/170 (22%)
Query: 238 GSRKRALPQPGAHPACHPLSSVKAAAVAAA--------AAVAGGGGLLGPH--------- 280
G A P P A P P AA+V+ + AA+A G L GP+
Sbjct: 138 GGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGS 197
Query: 281 ------------LLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVA-AA 327
L GAP PPPPPPPP P A + P D L AA AA
Sbjct: 198 PLSPLPNALPPALHGAPQPPPPPPPP-------PLAAYGPPGHLAGDKLLPPAAFEPHAA 250
Query: 328 SLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
L A +L+ GG GTG GGAG G A G+ A G A AGA GP
Sbjct: 251 LLGRAEDALARGLPGGGGGTGSGGAGSGSAA--GLLAPLGGLAAAGAHGP 298
Score = 52.0 bits (123), Expect = 4e-06
Identities = 63/245 (25%), Positives = 77/245 (31%), Gaps = 61/245 (24%)
Query: 511 LDLAEPGGAAGSAEAAP----PPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSG 566
L L GG A A PG A G P G +L + GG G
Sbjct: 3 LSLESLGGLHSVAHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGG 62
Query: 567 GDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGG--GSYHHSSAF 624
G A GAG+A G+ G + P HP + +A G G+Y +
Sbjct: 63 GGAGG----------AGGAGSAGGGADFRGE-LAGPLHPAMGMACEAPGLGGTYTTLTPL 111
Query: 625 RPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLL------ 678
+ + H A+A + HPH H HP PP PP P L
Sbjct: 112 QHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAA-----PPPPPPPQRLAASVSG 166
Query: 679 --------------------------------LPPQPDEPGSERHHPAPPPPPPPPPPPP 706
L P P+ H AP PPPPPPPPP
Sbjct: 167 SFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHG-APQPPPPPPPPPL 225
Query: 707 LAQHP 711
A P
Sbjct: 226 AAYGP 230
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 73.6 bits (179), Expect = 1e-12
Identities = 122/493 (24%), Positives = 160/493 (32%), Gaps = 71/493 (14%)
Query: 248 GAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPP--PLAELAGAPHAH 305
GA PA + AA A A GG G P P PP P PL AP A
Sbjct: 72 GAGPAAPAEGAPGAAPEPPPAGRARPGG-------GGPQRPGPPSPRRPLVPAGPAPPAA 124
Query: 306 HKRPRFDDDDDS---LQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGV 362
RP + S + AA VAA A A A + A G G G G G G
Sbjct: 125 KLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPG--PGPGP 182
Query: 363 GAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKF-PGCGGLFPHPYTFPAAAAAFSLC 421
G G G AG GA + + S + + G L P P AA ++
Sbjct: 183 GPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLP----LPKPAAPGTVI 238
Query: 422 HKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYP-PFCMFWPPRTPGGLP 480
GAAA A + A AP A PA P P + PP P G P
Sbjct: 239 QTPPFVGAAAPPAPAAPSPPAAPAPAA-------PAAAPPPPPPAPATLARPPGHPAGPP 291
Query: 481 VPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGP 540
PPP A+ GG+AG+A A P P V+ P
Sbjct: 292 TAAPAVPPPA----------------------AAQNGGSAGAAPAPAPAAGGPAGVSGQP 329
Query: 541 GSG-----PPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPA 595
G G P P + + +PP + ++ PA + A+ G G+ P+
Sbjct: 330 GPGAAAAAPAPGVKAESPKRVVQAAPPAAQ----TLAASGPASTAASMVIGPTMQGALPS 385
Query: 596 GSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPH 655
+ VP P K G+ S + P A+ A P
Sbjct: 386 PAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIR-------ATLTPTVLAPRLPQ 438
Query: 656 HHHHPHHHHHHHHPP------QPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQ 709
+P + + PP LL++P Q + H P P P P +
Sbjct: 439 PPQNPTNIQNFQLPPGMVLVRSENGQLLMIPQQALAQMQAQAHAQPQTTMAPRPATPTSA 498
Query: 710 HPHHRGLLSPGGT 722
P + GT
Sbjct: 499 PPVQISTVQAPGT 511
Score = 69.3 bits (168), Expect = 2e-11
Identities = 98/381 (25%), Positives = 125/381 (32%), Gaps = 88/381 (23%)
Query: 516 PGGAAGSAEAAPPPG------QPPQVVANGPGSG----PPPPA-------GGAGSRDALF 558
P GAAG+ AAP G +PP PG G P PP+ G A
Sbjct: 67 PAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKL 126
Query: 559 ESPPGGSGGDC---------SAGSTP-PADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLL 608
PP GS G C +AG P PA AG A AA +GP P P P
Sbjct: 127 RPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP-GPGPG 185
Query: 609 EGRKAGGG------------SYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSA-QTHPH 655
G+ AG G + HH++A P + A L AP + QT P
Sbjct: 186 PGKPAGPGAAQTLNGSAALLNSHHAAA--PAVSLVNNGPAALLPLPKPAAPGTVIQTPP- 242
Query: 656 HHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRG 715
PP+P PP P + PA PPPPPP P LA+ P H
Sbjct: 243 ----------FVGAAAPPAPAAPSPPAAPAPAA----PAAAPPPPPPAPATLARPPGH-- 286
Query: 716 LLSPGGTSCCYPS--EDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEG-----RDPDDDEE 768
P G P+ ++ P G + G P +
Sbjct: 287 ---PAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVK 343
Query: 769 EDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGD 828
+ V+ P + L GP+ +S P + GA P
Sbjct: 344 AESPKRVVQAAP--PAAQTLAASGPASTAASMVIGPTMQGALP----------------S 385
Query: 829 PGSDLPPPPPPPLAPQKASGG 849
P + PP P P K + G
Sbjct: 386 PAAVPPPAPGTPTGLPKGAAG 406
Score = 52.0 bits (123), Expect = 4e-06
Identities = 78/310 (25%), Positives = 94/310 (30%), Gaps = 37/310 (11%)
Query: 231 VKAMFNGGSRKRALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPP 290
V + NG + LP+P A AA A A P A PPPPP
Sbjct: 215 VSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274
Query: 291 PPP-----PLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGA 345
P P P AG P A P A SA AA AA G A
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVP-----------PPAAAQNGGSAGAAPAPAPAAGGPA 323
Query: 346 GTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLF 405
G G G A G A + P + + S + P G
Sbjct: 324 GVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGAL 383
Query: 406 PHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYP 465
P P P A K AGA ++L P A SG+ A
Sbjct: 384 PSPAAVPPPAPGTPTGLPKGAAGAVTQSL--------SRTPTATTSGI-------RATLT 428
Query: 466 PFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALL---RQAFLDLAEPGGAAGS 522
P + PR P PT +Q PP + E+ LL +QA + A
Sbjct: 429 PTVL--APRLPQPPQNPTNIQNFQLPPGMV-LVRSENGQLLMIPQQALAQMQAQAHAQPQ 485
Query: 523 AEAAPPPGQP 532
AP P P
Sbjct: 486 TTMAPRPATP 495
Score = 51.6 bits (122), Expect = 5e-06
Identities = 92/358 (25%), Positives = 118/358 (32%), Gaps = 89/358 (24%)
Query: 245 PQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGA---PPPPPPPPPPLAELAGA 301
P G+ +C P+ + A A A AG GP L A P P P P P G
Sbjct: 129 PPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGK 188
Query: 302 PHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVG 361
P A AA +L+ +AA L+ A+ A V+ V
Sbjct: 189 P------------------AGPGAAQTLNGSAALLNSHHAAAPA-----------VSLVN 219
Query: 362 VGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLC 421
G A ++P+P + G V+Q P G P P+ AA
Sbjct: 220 NGPAA---------------LLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAA---- 260
Query: 422 HKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPV 481
A A A A P PA P + PP P G P
Sbjct: 261 --------------PAPAAPAAAPPPPP------PA--------PATLARPPGHPAGPPT 292
Query: 482 PTYLQPPP---QPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPG----QPPQ 534
PPP Q + G A +PA A + +PG G+A AAP PG P +
Sbjct: 293 AAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVS-GQPG--PGAAAAAPAPGVKAESPKR 349
Query: 535 VVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGS 592
VV P + A G S A P G S + PP G AAG+
Sbjct: 350 VVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGA 407
Score = 33.9 bits (76), Expect = 1.0
Identities = 64/288 (22%), Positives = 89/288 (30%), Gaps = 32/288 (11%)
Query: 579 SVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHS--SAFRPVGGKDDAESL 636
S + AGA A + G+ AP P R GGG S RP+ A
Sbjct: 64 SGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPA 123
Query: 637 AKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPG--SERHHPA 694
AKL G+ S P P P P +P P + R P
Sbjct: 124 AKLRPPPEGSAGSCAPVP----------AAAAVAAGPEPAPAGPAKPAGPAALAARAGPG 173
Query: 695 PPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEG 754
P P P P P P + + G++ S ++ V + + P
Sbjct: 174 PGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAA--------APAVSLVNNGPAAL 225
Query: 755 EEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGL 814
+ P V+ P VG PS + APA A P
Sbjct: 226 LPLPKPAAPG---------TVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPA 276
Query: 815 NSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPGSPVHHPS 862
++ L + G P + P PPP A S G + +P P+
Sbjct: 277 PAT-LARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPA 323
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 72.8 bits (177), Expect = 2e-12
Identities = 114/473 (24%), Positives = 154/473 (32%), Gaps = 116/473 (24%)
Query: 482 PTYLQPPPQPPS--------ALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPP 533
P+Y +P PP ++G A + P L A + + GS + PPP P
Sbjct: 870 PSYERPSFLPPGPGLMLRQKSIGAAEDDRPYLAPPA-MKFSRSLSVPGSEDIPPPPTTSP 928
Query: 534 QVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSG 593
P S PP P+ S L SP GG S G P A + A+ G
Sbjct: 929 P---EPPYSTPPVPS----SSGRLTPSPRGGPFNPGSGGPLP-------ASSPASFDGPS 974
Query: 594 PAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTH 653
P +RV + S +HS P
Sbjct: 975 PPDTRVGSREK------------SLYHSGPLPPA-------------------------- 996
Query: 654 PHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPP-----PPPP------- 701
HHHP HHHHHH PP P PP P E + PPP P P
Sbjct: 997 ---HHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGG 1053
Query: 702 -PPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEG 760
P P P A P H G GG S P+ + + + P +G
Sbjct: 1054 GPSPTPGAPSPSHHGSAGGGGGSSQGPAL-----RYFQLPPRAASAAMYVPARSGRGRKG 1108
Query: 761 RDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAG-------AFPLG 813
+ E G+P GGG L +S PAVA P
Sbjct: 1109 PLVKQTKVE--------GEPQKGGG--LPPAPSPTSPASPQPPPAVAAPSEKNSIPIPTI 1158
Query: 814 LNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPG------------SPVHHP 861
+ + G+ GS PP P GGG SSP SPV P
Sbjct: 1159 IIKAPSTSSSGR-SSQGSSTEAEPPTQPEPTGGGGGGGSSPSPAPAMSPVPPSPSPVPTP 1217
Query: 862 SLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHS--FFITDS-DASGGD 911
+ P+ D ++ ++ + + + + ++ + S F TD+ D GGD
Sbjct: 1218 ASPSGPATLDF-TSQFGAALVGAARREGGWQNEARRRSTLFLSTDAGDEDGGD 1269
Score = 59.7 bits (143), Expect = 2e-08
Identities = 88/360 (24%), Positives = 123/360 (34%), Gaps = 72/360 (20%)
Query: 428 GAAAEALGGAGAGGAGAA-----------PKAGLSGLFWPA----GRKDAFYPPFCMFWP 472
GA + + G+ GG G++ P+A + ++ PA GRK +
Sbjct: 1060 GAPSPSHHGSAGGGGGSSQGPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGE 1119
Query: 473 PRTPGGLP-VPTYLQPP-PQPPSALGCALGES----PALLRQAFLDLAEPGGAAGSAEAA 526
P+ GGLP P+ P PQPP A+ ++ P ++ +A + + GS+ A
Sbjct: 1120 PQKGGGLPPAPSPTSPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEA 1179
Query: 527 PPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPA--DSVAAAG 584
PP QP G G P PA A+ PP S A + PA D + G
Sbjct: 1180 EPPTQPEPTGGGGGGGSSPSPA------PAMSPVPPSPSPVPTPASPSGPATLDFTSQFG 1233
Query: 585 AGAAAAGSGPAGSRVPAPHHPHLLEGRKAG---------------GGSYHHSSAFRPVGG 629
A A G + A L AG G HS + G
Sbjct: 1234 AALVGAARREGGWQNEARRRSTLFLSTDAGDEDGGDGGLGTGAAPGPRLRHSKSIDE--G 1291
Query: 630 KDDAESLAKLHGASAGAPHSAQTHPHHHH---------------HPHHHHHHHHPPQPPS 674
AE +L A +GA + + P H P S
Sbjct: 1292 MFSAEPYLRLESAGSGAGYGGYGAGSRAYGGGGGSSAFTSFLPPRPLVHPLTGKALDPAS 1351
Query: 675 PLLL--------LPPQPDEPGSERHHPAPPPP---PPPPPPPPLAQHPHHRGLLSPGGTS 723
PL L L + G+ + P PP P PPP P + H HH +L G S
Sbjct: 1352 PLGLALAARERALKESSEGGGAPQPPPRPPSPRYEAPPPTPHHHSPHAHHEPVLRLWGAS 1411
Score = 52.8 bits (125), Expect = 2e-06
Identities = 89/336 (26%), Positives = 112/336 (33%), Gaps = 46/336 (13%)
Query: 245 PQPGAHPACHPLSSVKAAAVAAAAAVAGGGG-----------LLGPHLLGAPPPPPPPPP 293
P P PL V AVAAA L AP P PP P
Sbjct: 1591 PLPDTPAPATPLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGASAAPGDPHPPGP 1650
Query: 294 PLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAG 353
P A A AP A P DS E ++S S + S + GGG AG
Sbjct: 1651 P-APAAPAPAAPQPGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSAG 1709
Query: 354 GGCVAGVGVGAG------------AGAGAGAGAKGPRSYPVIPVPSK------GSFGGVL 395
GG AG GV +G A G+ GP P + PSK G+ GG+
Sbjct: 1710 GGGGAGAGVASGPELLDTYVAYLDGQAFGGSSTPGPPYPPQLMTPSKLRGRALGASGGLR 1769
Query: 396 QKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFW 455
PG G P T + S+ D A A G G P A +
Sbjct: 1770 ---PGPSGGLRDPVT--PTSPTVSVTGAGTDGLLALRACSGPPTAGVAGGPVA-VEPEVP 1823
Query: 456 PAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAE 515
P A P + P G P P L P P A A ++ +++ + L +
Sbjct: 1824 PVPLPTASSLPRKLL--PWEEGPGPPPPPLPGPLAQPQASALATVKA-SIISELSSKLQQ 1880
Query: 516 PGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGA 551
GG++ + A P G G G GGA
Sbjct: 1881 FGGSSAAGGALP-------WARGGSGGGGDSHHGGA 1909
Score = 51.6 bits (122), Expect = 5e-06
Identities = 77/279 (27%), Positives = 97/279 (34%), Gaps = 46/279 (16%)
Query: 473 PRTPGGL-PVPTYLQP----PPQPPSALGCA---LGESPALLRQAFLDLAEPGGAAGSAE 524
P TPG P+P P PP PP A+ A L + + L ++A A +A
Sbjct: 1583 PLTPGPPHPLPDTPAPATPLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGASAAP 1642
Query: 525 AAPPPGQPPQVVANGPGS---GPPPPAGGAGSRDALFESPPGGSGGDC---SAGSTPPAD 578
P P PP A P + GP PP G D+ E S D + S
Sbjct: 1643 GDPHPPGPPAPAAPAPAAPQPGPDPPPG----TDSGIEEVDSRSSSDHPLETISSASTLS 1698
Query: 579 SVAAAGAGAAAAG--------SGP---------------AGSRVPA-PHHPHLLEGRKAG 614
S++A G G+A G SGP GS P P+ P L+ K
Sbjct: 1699 SLSAEGGGSAGGGGGAGAGVASGPELLDTYVAYLDGQAFGGSSTPGPPYPPQLMTPSKLR 1758
Query: 615 GGSYHHSSAFR--PVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHP--P 670
G + S R P GG D + + GA P P
Sbjct: 1759 GRALGASGGLRPGPSGGLRDPVTPTSPTVSVTGAGTDGLLALRACSGPPTAGVAGGPVAV 1818
Query: 671 QPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQ 709
+P P + LP P P PPPPP P PLAQ
Sbjct: 1819 EPEVPPVPLPTASSLPRKLLPWEEGPGPPPPPLPGPLAQ 1857
Score = 50.1 bits (118), Expect = 1e-05
Identities = 159/687 (23%), Positives = 196/687 (28%), Gaps = 183/687 (26%)
Query: 272 GGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSA 331
GGG P +P PP P P P P +F AA+V AA
Sbjct: 1193 GGGSSPSPAPAMSPVPPSPSPVPTPASPSGPATLDFTSQFG--------AALVGAARREG 1244
Query: 332 A-------AASLSVAAASGGAGTGGGGAGGGCVAGVGV--------------------GA 364
++L ++ +G G GG G G G + A
Sbjct: 1245 GWQNEARRRSTLFLSTDAGDEDGGDGGLGTGAAPGPRLRHSKSIDEGMFSAEPYLRLESA 1304
Query: 365 GAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKK 424
G+GAG G G R+Y GG F L P P P A
Sbjct: 1305 GSGAGYGGYGAGSRAY---------GGGGGSSAFTSF--LPPRPLVHPLTGKALDPASPL 1353
Query: 425 EDAGAAAE-ALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPT 483
A AA E AL + GG P PPR P P
Sbjct: 1354 GLALAARERALKESSEGGGAPQP-------------------------PPRPPS----PR 1384
Query: 484 YLQPPPQP----PSA-------LGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQ- 531
Y PPP P P A L A PA R+ A G S A+PP +
Sbjct: 1385 YEAPPPTPHHHSPHAHHEPVLRLWGASPPDPA--RRELGYRAGLGSQEKSLPASPPAARR 1442
Query: 532 ------PPQVVANGP-----GSGPPPPAGGAGS--RDALFESPPG-----------GSGG 567
PP GP G+ PP P G R A E P
Sbjct: 1443 SLLHRLPPTAPGVGPLLLQLGTEPPAPHPGVSKPWRSAAPEEPERLPLHVRFLENCQPRA 1502
Query: 568 DCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPV 627
++G PP++ G P S P+P P E P
Sbjct: 1503 PVTSGRGPPSED------GPGVPPPSPRRSVPPSPTSPRASEENGLP------LLVLPPP 1550
Query: 628 GGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPG 687
D E L P P P PP PL PD P
Sbjct: 1551 APSVDVEDGEFLFVEPLPPPLEFSNSFEKPESPL-------TPGPPHPL------PDTP- 1596
Query: 688 SERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVE 747
AP P PP PPP +A P L S + Y SE ++ + +
Sbjct: 1597 ------APATPLPPVPPPAVAAAP--PTLDSTASSLTSYDSEVATLTQGASAAPGDPHPP 1648
Query: 748 GHKPP-------------------EGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFL 788
G P G EE + R D E + L GG
Sbjct: 1649 GPPAPAAPAPAAPQPGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSA 1708
Query: 789 QGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQK--- 845
G G + G+ P + + L+ Q G PG PP PP + P K
Sbjct: 1709 GGGGGA--GAGVASGPELLDTYVAYLDG----QAFGGSSTPG---PPYPPQLMTPSKLRG 1759
Query: 846 ----ASGGGSSSPGSPVHHPSLEEQPS 868
ASGG P + P P+
Sbjct: 1760 RALGASGGLRPGPSGGLRDPVTPTSPT 1786
Score = 43.5 bits (101), Expect = 0.001
Identities = 121/502 (24%), Positives = 153/502 (30%), Gaps = 121/502 (24%)
Query: 274 GGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAA 333
GG L P P P PPP +A AP + P + +A +++ S+
Sbjct: 1123 GGGLPPAPSPTSPASPQPPPAVA----APSEKNSIP----IPTIIIKAPSTSSSGRSSQG 1174
Query: 334 ASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGG 393
+S + TGGGG GG + + A A + P S +P P+ S
Sbjct: 1175 SSTEAEPPTQPEPTGGGGGGG----------SSPSPAPAMSPVPPSPSPVPTPASPSGPA 1224
Query: 394 VLQKFPGCG----GLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAP--- 446
L G G + A S DAG + GG G G GAAP
Sbjct: 1225 TLDFTSQFGAALVGAARREGGWQNEARRRSTLFLSTDAG---DEDGGDGGLGTGAAPGPR 1281
Query: 447 ---------------------KAGLSGLFWPAGRKDAFY------PPFCMFWPPRTPGGL 479
AG + G Y F F PPR P
Sbjct: 1282 LRHSKSIDEGMFSAEPYLRLESAGSGAGYGGYGAGSRAYGGGGGSSAFTSFLPPR-PLVH 1340
Query: 480 PVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPP---GQPPQVV 536
P+ P P LG AL A +A + +E GGA P P PP
Sbjct: 1341 PLTGKALDPASP---LGLAL----AARERALKESSEGGGAPQPPPRPPSPRYEAPPPTPH 1393
Query: 537 ANGP-----------GSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGA 585
+ P G+ PP PA R L GS S P A
Sbjct: 1394 HHSPHAHHEPVLRLWGASPPDPA-----RRELGYRAGLGSQEKSLPASPPAARRSLLHRL 1448
Query: 586 GAAAAGSGP----AGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHG 641
A G GP G+ PAPH R A P + + L
Sbjct: 1449 PPTAPGVGPLLLQLGTEPPAPHPGVSKPWRSAA-----------PEEPERLPLHVRFLEN 1497
Query: 642 ASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAP----PP 697
AP ++ P P PPSP +PP P P + + P PP
Sbjct: 1498 CQPRAPVTSGRGPPSEDGP--------GVPPPSPRRSVPPSPTSPRASEENGLPLLVLPP 1549
Query: 698 PPP------------PPPPPPL 707
P P P PPPL
Sbjct: 1550 PAPSVDVEDGEFLFVEPLPPPL 1571
Score = 41.6 bits (96), Expect = 0.005
Identities = 128/485 (26%), Positives = 153/485 (31%), Gaps = 97/485 (20%)
Query: 278 GPHLLGAPPPPP--------PPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAA-S 328
G L P PPP P PL G PH P + AV AA +
Sbjct: 1559 GEFLFVEPLPPPLEFSNSFEKPESPLTP--GPPHPLPDTPAPATPLPPVPPPAVAAAPPT 1616
Query: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSK 388
L + A+SL+ + T G A G G A A A GP P
Sbjct: 1617 LDSTASSLTSYDSEVATLTQGASAAPGDPHPPGPPAPAAPAPAAPQPGPD-------PPP 1669
Query: 389 GSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKA 448
G+ G+ + HP ++A+ S E G+A GG G GAG A
Sbjct: 1670 GTDSGIEEVDSRSSS--DHPLETISSASTLSSL-SAEGGGSA----GGGGGAGAGVASGP 1722
Query: 449 GLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQ---PPSALGCALGESPAL 505
L + Y F TPG P Y PPQ P G ALG S L
Sbjct: 1723 ELLDTY-------VAYLDGQAFGGSSTPG----PPY---PPQLMTPSKLRGRALGASGGL 1768
Query: 506 LRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGS---------GPPPPAGGAGSRDA 556
PG + G + P P V G G+ PP AG AG A
Sbjct: 1769 ---------RPGPSGGLRDPVTPTS--PTVSVTGAGTDGLLALRACSGPPTAGVAGGPVA 1817
Query: 557 LF-ESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAP---HHPHLLEGRK 612
+ E PP P A S+ G GP +P P L K
Sbjct: 1818 VEPEVPPV---------PLPTASSLPRKLL-PWEEGPGPPPPPLPGPLAQPQASALATVK 1867
Query: 613 AGGGSYHHSSAFRPVGGKDDAE-SLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQ 671
A S SS + GG A +L G S G S HH + P+
Sbjct: 1868 ASIIS-ELSSKLQQFGGSSAAGGALPWARGGSGGGGDS------------HHGGASYVPE 1914
Query: 672 PPSPLLLLPPQPDEPGSERHHPAPPP----PPPPPPPPPLAQHPHHRGLLSPGGTSCCYP 727
S L D S P P PP PP P +PG TS P
Sbjct: 1915 RTSSLQRQRLSDDSQSSLLSKPVSSLFQNWPKPPLPPLPTGTGVSPTAAAAPGATS---P 1971
Query: 728 SEDSS 732
S SS
Sbjct: 1972 SASSS 1976
Score = 38.9 bits (89), Expect = 0.031
Identities = 45/160 (28%), Positives = 53/160 (33%), Gaps = 31/160 (19%)
Query: 477 GGLPVPTYLQPPPQPPSALGCALGES--PALL------RQAFLDLAEPG----GAAG--- 521
GG P PT P P + G G S PAL R A + P G G
Sbjct: 1052 GGGPSPTPGAPSPSHHGSAGGGGGSSQGPALRYFQLPPRAASAAMYVPARSGRGRKGPLV 1111
Query: 522 -----SAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSR-------DALFESPPGGSGGDC 569
E G PP P S PPPA A S + ++P S G
Sbjct: 1112 KQTKVEGEPQKGGGLPPAPSPTSPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRS 1171
Query: 570 SAGST----PPADSVAAAGAGAAAAGSGPAGSRVPAPHHP 605
S GS+ PP G G + PA + P P P
Sbjct: 1172 SQGSSTEAEPPTQPEPTGGGGGGGSSPSPAPAMSPVPPSP 1211
Score = 35.8 bits (81), Expect = 0.26
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 19/75 (25%)
Query: 245 PQPGAHP----ACHPLSSVKAAAVAAAAAV--AGGGGLLGPHLLGAPPPPPPPP------ 292
P+P HP A P S + A A A+ + GG GAP PPP PP
Sbjct: 1335 PRPLVHPLTGKALDPASPLGLALAARERALKESSEGG-------GAPQPPPRPPSPRYEA 1387
Query: 293 PPLAELAGAPHAHHK 307
PP +PHAHH+
Sbjct: 1388 PPPTPHHHSPHAHHE 1402
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 71.2 bits (173), Expect = 6e-12
Identities = 168/642 (26%), Positives = 194/642 (30%), Gaps = 100/642 (15%)
Query: 271 AGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLS 330
AG G +GP GAP P PP P +P + A
Sbjct: 569 AGPQGKVGPS--GAPGEDGRPGPP------GPQGARGQPGV------MGFPGPKGANGEP 614
Query: 331 AAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGS 390
A + A G G G G G AG GA GP + +P P
Sbjct: 615 GKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP- 673
Query: 391 FGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGL 450
PG GG P P A A L + + G E G G G
Sbjct: 674 --------PGEGGK-PGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGT 724
Query: 451 SGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAF 510
G P G P P G P LQ P A G A P R
Sbjct: 725 PGTDGPKGASG-----------PAGPPGAQGPPGLQGMPGERGAAGIA---GPKGDRG-- 768
Query: 511 LDLAEPG-----GAAGSAEAAPPPGQPPQVVANGPGS--GPPPPAGGAGSRDALFE---- 559
D+ E G G G P G P ANG GPP PAG AG+R A E
Sbjct: 769 -DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGET 827
Query: 560 SPPGGSG--GDCSAGSTPPA-DSVAAAGAGAAAAGSGPAG-SRVPAPHHPHLLEGRKAGG 615
PPG +G G A P A AG A GP G S P P P + G K
Sbjct: 828 GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGAR 887
Query: 616 GSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPP-QPPS 674
G+ A G A G++ P P PP +
Sbjct: 888 GAQGPPGA----TGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGE 943
Query: 675 PLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQH------PHHRGLLS-PG--GTSCC 725
P L P P E P PP P LA P RG PG G S
Sbjct: 944 PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 1003
Query: 726 YPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEE---------GRDPDDDEEEDEETEVL 776
+ + D V G P GE E GRD + D
Sbjct: 1004 PGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGA 1063
Query: 777 LGDPLVGGGRFLQG-RGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQ-------EDGKLGD 828
+G P G G GP+ K R A A P G +R +Q + G+ G+
Sbjct: 1064 VGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGE 1123
Query: 829 PGS------------DLPPPPPPPLAPQKASG-GGSSSPGSP 857
PG P PP P Q ASG G S P P
Sbjct: 1124 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGP 1165
Score = 67.0 bits (162), Expect = 1e-10
Identities = 161/634 (25%), Positives = 199/634 (31%), Gaps = 119/634 (18%)
Query: 265 AAAAAVAGGGGLLGPHLLGAPPPPPPPP--------PPLAELAGAPHAHHKRPR--FDDD 314
A A G G GP P PP PP + AGAP R F +
Sbjct: 647 AGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGE 706
Query: 315 DDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGG-------------GAGG------- 354
S + L + ASG AG G GA G
Sbjct: 707 RGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGD 766
Query: 355 -GCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFP-GCGGLF------- 405
G V G G G G GP P P + G G V P G G
Sbjct: 767 RGDVGEKGPEGAPGKDGGRGLTGPIG-PPGPAGANGEKGEVGPPGPAGSAGARGAPGERG 825
Query: 406 ----PHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGA----GGAGAAPKAGLSGLFWPA 457
P P F A K + G A + G AGA G +GA G +G+ P
Sbjct: 826 ETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK-GDAGAPGPQGPSGAPGPQGPTGVTGPK 884
Query: 458 GRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPG 517
G + A PP +P G P P PP G + + P + A D PG
Sbjct: 885 GARGAQGPPGATGFP--GAAGRVGPPGSNGNPGPPGPPGPSGKDGP---KGARGDSGPPG 939
Query: 518 --GAAGSAEAAPPPGQPPQVVANGP--GSGPPPPAGGAGSRDALFESPPGGSGGDCSAGS 573
G G A PPG+ + +GP GPP P G AG R + PG G G
Sbjct: 940 RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIV--GLPGQRGERGFPGL 997
Query: 574 TPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDA 633
P+ GA A+ GP P P P L G G A P G+D A
Sbjct: 998 PGPSGEPGKQGAPGASGDRGP-----PGPVGPPGLTGPAGEPGREGSPGADGP-PGRDGA 1051
Query: 634 ESLAKLHG--ASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERH 691
+ G + GAP + PP P P Q D +
Sbjct: 1052 AGVKGDRGETGAVGAPGAP-----------------GPPGSPGPAGPTGKQGDRGEAGAQ 1094
Query: 692 HPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKP 751
P P P RG+ P G D+ + E E ++GH+
Sbjct: 1095 GPMGPSGPAGA-----------RGIQGPQG---------PRGDKGEAGEPGERGLKGHRG 1134
Query: 752 PEGEEEEEG-RDPDDDEEEDEETEVLLGDPLVGGGRFLQGR-GPSEKGSSRDRAPAVAGA 809
G + G P D+ G G R G GPS K + +
Sbjct: 1135 FTGLQGLPGPPGPSGDQGAS-------GPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPP 1187
Query: 810 FPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAP 843
P G + E G G PG+ PP PP P P
Sbjct: 1188 GPRGRSG-----ETGPAGPPGNPGPPGPPGPPGP 1216
Score = 57.4 bits (137), Expect = 8e-08
Identities = 148/590 (25%), Positives = 177/590 (30%), Gaps = 120/590 (20%)
Query: 339 AAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIP-------------- 384
A G G GG G G GA GA+GPR P P
Sbjct: 353 AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT 412
Query: 385 --VP-SKGSFGGVLQKFPGCGGL--FPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGA 439
+P +KGS G PG G FP P P A K G A
Sbjct: 413 DGIPGAKGSAGA-----PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ 467
Query: 440 GGAGAAPKAGLSGLFWPA---GRKDAFYPPFCM--FWPPRTPG-----GLPVPTYLQPPP 489
G G AG G PA G++ A P + PP G G P L P
Sbjct: 468 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPK 527
Query: 490 QPPSALGCALGESPALLRQAFLDLAEPG-----GAAGSAEAAPPPGQPPQVVANG-PGS- 542
P G + P + A D PG GA G G +V +G PG
Sbjct: 528 GAPGERGPSGLAGP---KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGED 584
Query: 543 ---GPPPPAGGAGSRDAL-FESPPGGSGGDCSAG--STPPADSV-------AAAGAGAAA 589
GPP P G G + F P G +G AG P A + GA
Sbjct: 585 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP 644
Query: 590 AGSGPAGSR----VPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAG 645
+GPAG R P P L G G GGK + + AG
Sbjct: 645 GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE----------GGKPGDQGVP----GEAG 690
Query: 646 APHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSE--RHHPAPPPPPPPPP 703
AP Q P L P PG++ + P PP
Sbjct: 691 APGLVGPRGERGFPGERGSPGAQGLQGPRGL------PGTPGTDGPKGASGPAGPPGAQG 744
Query: 704 PPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEG--- 760
PP L P RG G P D + G K PEG ++G
Sbjct: 745 PPGLQGMPGERGAAGIAG-----PKGDRGD-------------VGEKGPEGAPGKDGGRG 786
Query: 761 -----RDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPA------VAGA 809
P E+ EV G P G +G P E+G + PA A
Sbjct: 787 LTGPIGPPGPAGANGEKGEV--GPPGPAGSAGARG-APGERGETGPPGPAGFAGPPGADG 843
Query: 810 FPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASG--GGSSSPGSP 857
P + G G PG P P P P +G G + G P
Sbjct: 844 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPP 893
Score = 52.8 bits (125), Expect = 2e-06
Identities = 158/654 (24%), Positives = 192/654 (29%), Gaps = 101/654 (15%)
Query: 270 VAGGGGLLG-PHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAAS 328
+ G G G P + GAP P P PP + A P P+ + + A
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLG----PKGQTGEPGI--AGFKGEQG 468
Query: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYP-----VI 383
A G AG G G GVG G GA G R +P
Sbjct: 469 PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVG---PIGPPGERGAPGNRGFPGQDGLAG 525
Query: 384 PVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAG 443
P + G G P P P A L + DAG + +G +GA G
Sbjct: 526 PKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK-VGPSGAPGED 584
Query: 444 AAPKAGLSGLFWPAGRKDAFYPPFCMFWP-----------------PRTPG--GLP---V 481
P P G + A P M +P P PG GLP
Sbjct: 585 GRP--------GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDG 636
Query: 482 PTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANG-- 539
T PP P G GE A F L P G G G P + A G
Sbjct: 637 ETGAAGPPGPAGPAG-ERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV 695
Query: 540 --------PGSGPPPPAGGAGSRDAL-----FESPPGGSGGDCSAGSTPPADSVAAAGAG 586
PG P A G L + P G SG G+ P G
Sbjct: 696 GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGER 755
Query: 587 AAAAGSGPAGSRVPAPHH-PHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAG 645
AA +GP G R P G+ G G P G + + A +
Sbjct: 756 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA 815
Query: 646 APHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPD-EPGSE-------RHHPAPPP 697
A PP P PP D +PG++ + A P
Sbjct: 816 GARGAP----------GERGETGPPGPAG--FAGPPGADGQPGAKGEQGEAGQKGDAGAP 863
Query: 698 PPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEE 757
P P P Q P G+ P G ++ G+ P G
Sbjct: 864 GPQGPSGAPGPQGP--TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPG 921
Query: 758 EEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRG--PSEKGSSRDRAPAVAGA--FPLG 813
G+D D G P G LQG P EKG D P+ A P G
Sbjct: 922 PSGKDGPKGARGDS------GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 975
Query: 814 LNSSR----LLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPGSPVHHPSL 863
L R L + G+ G PG LP P P G P PV P L
Sbjct: 976 LAGQRGIVGLPGQRGERGFPG--LPGPSGEPGKQGAPGASGDRGPPGPVGPPGL 1027
Score = 49.7 bits (117), Expect = 2e-05
Identities = 149/645 (23%), Positives = 184/645 (28%), Gaps = 114/645 (17%)
Query: 279 PHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSV 338
P G P PP PP PP G A FD+ A L +
Sbjct: 155 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEK---------AGGAQLGVMQGPMGP 205
Query: 339 AAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIP-------VPSKGSF 391
G G G G G G G +GP P P P K
Sbjct: 206 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE 265
Query: 392 GGV-----LQKFPGCGGL--------FPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAG 438
G + FPG GL +P A A + K ++G+ E
Sbjct: 266 RGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGV---KGESGSPGENGSPGP 322
Query: 439 AGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCA 498
G G + G +G AG + P P G P P P P A G A
Sbjct: 323 MGPRGLPGERGRTGPAGAAGARGNDGQP--------GPAGPPGPVGPAGGPGFPGAPG-A 373
Query: 499 LGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQP-------PQVVANGPGSGPPPPAGGA 551
GE A P GA G A P G+P P + PG+ P A G+
Sbjct: 374 KGE------------AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGS 421
Query: 552 GSRDAL-----FESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPA-PHHP 605
+ F P G G + G P G GP G PA P
Sbjct: 422 AGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGA 481
Query: 606 HLLEGRKAGGGSYHHSSAFRPVG-----------GKDDAESLAKLHGASAGAPHSAQTHP 654
G + G+ P+G G + LA GA S P
Sbjct: 482 PGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP 541
Query: 655 HHHHHPHHHHHHHHPPQPPSPLLL----LPPQPDEPGSE-----RHHPAPPPPPPPPPPP 705
+ P +P P L L +P + G + P P PP P
Sbjct: 542 --------KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQ 593
Query: 706 PLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDD----------EEEEQEVDVEGHKPPEGE 755
P G P G + E E ++ E G P G
Sbjct: 594 GARGQPGVMGFPGPKGAN----GEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGP 649
Query: 756 EEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFP--LG 813
E G + G P GG QG P E G+ P FP G
Sbjct: 650 AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQG-VPGEAGAPGLVGPRGERGFPGERG 708
Query: 814 LNSSRLLQ-EDGKLGDPGSDLPPPPPPPLAPQKASG--GGSSSPG 855
++ LQ G G PG+D P P P A G G PG
Sbjct: 709 SPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPG 753
Score = 49.7 bits (117), Expect = 2e-05
Identities = 96/402 (23%), Positives = 119/402 (29%), Gaps = 65/402 (16%)
Query: 255 PLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDD 314
P + A A G G +GP P PP PP P + D
Sbjct: 883 PKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK--------------DGP 928
Query: 315 DDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGA 374
+ ++ A G G G G G+ G G
Sbjct: 929 KGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQ 988
Query: 375 KGPRSYPVIPVPSKGSFGGVLQKFPGCGGLF--PHPYTFPAAAAAFSLCHKKEDAGAAAE 432
+G R +P +P PS G G Q PG G P P P G A E
Sbjct: 989 RGERGFPGLPGPS-GEPG--KQGAPGASGDRGPPGPVGPPGL------------TGPAGE 1033
Query: 433 ALGGAGAGGAGAAP-KAGLSGLFWPAGRKDAFYPPFCMFWPPRTPG--------GLPVPT 483
G G+ GA P + G +G+ G A P PP +PG G
Sbjct: 1034 P-GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAP-GPPGSPGPAGPTGKQGDRGEA 1091
Query: 484 YLQPPPQPPSALGCALGESPALLRQAFLDLAEPG--------GAAGSAEAAPPPGQPPQV 535
Q P P G + P R + EPG G G PPG
Sbjct: 1092 GAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQ 1151
Query: 536 VANGPGS-----GPPPPAGGAGSRDAL-FESPPGGSGGDCSAGSTPPADSVAAAGAGAAA 589
A+GP GPP P G +G A P G G +G T PA G
Sbjct: 1152 GASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1211
Query: 590 AGSGPA---------GSRVPAPHHPHLLEGRKAGGGSYHHSS 622
GP G R P + +A GG H +
Sbjct: 1212 GPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDA 1253
Score = 40.4 bits (93), Expect = 0.011
Identities = 85/350 (24%), Positives = 109/350 (31%), Gaps = 74/350 (21%)
Query: 512 DLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSA 571
DLA G G PG +V GP PAG G P G G
Sbjct: 92 DLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQG--------PRGDRGDKGEK 143
Query: 572 GSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKD 631
G+ P G GP G P P L GG++ A + GG D
Sbjct: 144 GAPGPRGRDGEPGTPGNPGPPGPPG----PPGPPGL-------GGNF----AAQMAGGFD 188
Query: 632 DAESLAKLHGASAG--APHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSE 689
+ A+L G G P + P P +P +P P + P P
Sbjct: 189 EKAGGAQL-GVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGP------ 241
Query: 690 RHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCC--YPSEDSSEDEDDEEEEQEVDVE 747
PP PP P A P G P G +P V+
Sbjct: 242 ---RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLP-----------GVK 287
Query: 748 GHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVA 807
GH+ G + +G + + + G P G R L P E+G +
Sbjct: 288 GHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGL----PGERGRTG------- 336
Query: 808 GAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPGSP 857
P G +R G G PG P PP P+ P GG PG+P
Sbjct: 337 ---PAGAAGAR-----GNDGQPG---PAGPPGPVGP----AGGPGFPGAP 371
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 71.2 bits (173), Expect = 6e-12
Identities = 168/642 (26%), Positives = 194/642 (30%), Gaps = 100/642 (15%)
Query: 271 AGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLS 330
AG G +GP GAP P PP P +P + A
Sbjct: 500 AGPQGKVGPS--GAPGEDGRPGPP------GPQGARGQPGV------MGFPGPKGANGEP 545
Query: 331 AAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGS 390
A + A G G G G G AG GA GP + +P P
Sbjct: 546 GKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP- 604
Query: 391 FGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGL 450
PG GG P P A A L + + G E G G G
Sbjct: 605 --------PGEGGK-PGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGT 655
Query: 451 SGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAF 510
G P G P P G P LQ P A G A P R
Sbjct: 656 PGTDGPKGASG-----------PAGPPGAQGPPGLQGMPGERGAAGIA---GPKGDRG-- 699
Query: 511 LDLAEPG-----GAAGSAEAAPPPGQPPQVVANGPGS--GPPPPAGGAGSRDALFE---- 559
D+ E G G G P G P ANG GPP PAG AG+R A E
Sbjct: 700 -DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGET 758
Query: 560 SPPGGSG--GDCSAGSTPPA-DSVAAAGAGAAAAGSGPAG-SRVPAPHHPHLLEGRKAGG 615
PPG +G G A P A AG A GP G S P P P + G K
Sbjct: 759 GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGAR 818
Query: 616 GSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPP-QPPS 674
G+ A G A G++ P P PP +
Sbjct: 819 GAQGPPGA----TGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGE 874
Query: 675 PLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQH------PHHRGLLS-PG--GTSCC 725
P L P P E P PP P LA P RG PG G S
Sbjct: 875 PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 934
Query: 726 YPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEE---------GRDPDDDEEEDEETEVL 776
+ + D V G P GE E GRD + D
Sbjct: 935 PGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGA 994
Query: 777 LGDPLVGGGRFLQG-RGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQ-------EDGKLGD 828
+G P G G GP+ K R A A P G +R +Q + G+ G+
Sbjct: 995 VGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGE 1054
Query: 829 PGS------------DLPPPPPPPLAPQKASG-GGSSSPGSP 857
PG P PP P Q ASG G S P P
Sbjct: 1055 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGP 1096
Score = 67.0 bits (162), Expect = 1e-10
Identities = 161/634 (25%), Positives = 199/634 (31%), Gaps = 119/634 (18%)
Query: 265 AAAAAVAGGGGLLGPHLLGAPPPPPPPP--------PPLAELAGAPHAHHKRPR--FDDD 314
A A G G GP P PP PP + AGAP R F +
Sbjct: 578 AGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGE 637
Query: 315 DDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGG-------------GAGG------- 354
S + L + ASG AG G GA G
Sbjct: 638 RGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGD 697
Query: 355 -GCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFP-GCGGLF------- 405
G V G G G G GP P P + G G V P G G
Sbjct: 698 RGDVGEKGPEGAPGKDGGRGLTGPIG-PPGPAGANGEKGEVGPPGPAGSAGARGAPGERG 756
Query: 406 ----PHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGA----GGAGAAPKAGLSGLFWPA 457
P P F A K + G A + G AGA G +GA G +G+ P
Sbjct: 757 ETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK-GDAGAPGPQGPSGAPGPQGPTGVTGPK 815
Query: 458 GRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPG 517
G + A PP +P G P P PP G + + P + A D PG
Sbjct: 816 GARGAQGPPGATGFP--GAAGRVGPPGSNGNPGPPGPPGPSGKDGP---KGARGDSGPPG 870
Query: 518 --GAAGSAEAAPPPGQPPQVVANGP--GSGPPPPAGGAGSRDALFESPPGGSGGDCSAGS 573
G G A PPG+ + +GP GPP P G AG R + PG G G
Sbjct: 871 RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIV--GLPGQRGERGFPGL 928
Query: 574 TPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDA 633
P+ GA A+ GP P P P L G G A P G+D A
Sbjct: 929 PGPSGEPGKQGAPGASGDRGP-----PGPVGPPGLTGPAGEPGREGSPGADGP-PGRDGA 982
Query: 634 ESLAKLHG--ASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERH 691
+ G + GAP + PP P P Q D +
Sbjct: 983 AGVKGDRGETGAVGAPGAP-----------------GPPGSPGPAGPTGKQGDRGEAGAQ 1025
Query: 692 HPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKP 751
P P P RG+ P G D+ + E E ++GH+
Sbjct: 1026 GPMGPSGPAGA-----------RGIQGPQG---------PRGDKGEAGEPGERGLKGHRG 1065
Query: 752 PEGEEEEEG-RDPDDDEEEDEETEVLLGDPLVGGGRFLQGR-GPSEKGSSRDRAPAVAGA 809
G + G P D+ G G R G GPS K + +
Sbjct: 1066 FTGLQGLPGPPGPSGDQGAS-------GPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPP 1118
Query: 810 FPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAP 843
P G + E G G PG+ PP PP P P
Sbjct: 1119 GPRGRSG-----ETGPAGPPGNPGPPGPPGPPGP 1147
Score = 57.4 bits (137), Expect = 8e-08
Identities = 148/590 (25%), Positives = 177/590 (30%), Gaps = 120/590 (20%)
Query: 339 AAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIP-------------- 384
A G G GG G G GA GA+GPR P P
Sbjct: 284 AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT 343
Query: 385 --VP-SKGSFGGVLQKFPGCGGL--FPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGA 439
+P +KGS G PG G FP P P A K G A
Sbjct: 344 DGIPGAKGSAGA-----PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ 398
Query: 440 GGAGAAPKAGLSGLFWPA---GRKDAFYPPFCM--FWPPRTPG-----GLPVPTYLQPPP 489
G G AG G PA G++ A P + PP G G P L P
Sbjct: 399 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPK 458
Query: 490 QPPSALGCALGESPALLRQAFLDLAEPG-----GAAGSAEAAPPPGQPPQVVANG-PGS- 542
P G + P + A D PG GA G G +V +G PG
Sbjct: 459 GAPGERGPSGLAGP---KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGED 515
Query: 543 ---GPPPPAGGAGSRDAL-FESPPGGSGGDCSAG--STPPADSV-------AAAGAGAAA 589
GPP P G G + F P G +G AG P A + GA
Sbjct: 516 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP 575
Query: 590 AGSGPAGSR----VPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAG 645
+GPAG R P P L G G GGK + + AG
Sbjct: 576 GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE----------GGKPGDQGVP----GEAG 621
Query: 646 APHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSE--RHHPAPPPPPPPPP 703
AP Q P L P PG++ + P PP
Sbjct: 622 APGLVGPRGERGFPGERGSPGAQGLQGPRGL------PGTPGTDGPKGASGPAGPPGAQG 675
Query: 704 PPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEG--- 760
PP L P RG G P D + G K PEG ++G
Sbjct: 676 PPGLQGMPGERGAAGIAG-----PKGDRGD-------------VGEKGPEGAPGKDGGRG 717
Query: 761 -----RDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPA------VAGA 809
P E+ EV G P G +G P E+G + PA A
Sbjct: 718 LTGPIGPPGPAGANGEKGEV--GPPGPAGSAGARG-APGERGETGPPGPAGFAGPPGADG 774
Query: 810 FPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASG--GGSSSPGSP 857
P + G G PG P P P P +G G + G P
Sbjct: 775 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPP 824
Score = 52.8 bits (125), Expect = 2e-06
Identities = 158/654 (24%), Positives = 192/654 (29%), Gaps = 101/654 (15%)
Query: 270 VAGGGGLLG-PHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAAS 328
+ G G G P + GAP P P PP + A P P+ + + A
Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLG----PKGQTGEPGI--AGFKGEQG 399
Query: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYP-----VI 383
A G AG G G GVG G GA G R +P
Sbjct: 400 PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVG---PIGPPGERGAPGNRGFPGQDGLAG 456
Query: 384 PVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAG 443
P + G G P P P A L + DAG + +G +GA G
Sbjct: 457 PKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK-VGPSGAPGED 515
Query: 444 AAPKAGLSGLFWPAGRKDAFYPPFCMFWP-----------------PRTPG--GLP---V 481
P P G + A P M +P P PG GLP
Sbjct: 516 GRP--------GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDG 567
Query: 482 PTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANG-- 539
T PP P G GE A F L P G G G P + A G
Sbjct: 568 ETGAAGPPGPAGPAG-ERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV 626
Query: 540 --------PGSGPPPPAGGAGSRDAL-----FESPPGGSGGDCSAGSTPPADSVAAAGAG 586
PG P A G L + P G SG G+ P G
Sbjct: 627 GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGER 686
Query: 587 AAAAGSGPAGSRVPAPHH-PHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAG 645
AA +GP G R P G+ G G P G + + A +
Sbjct: 687 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA 746
Query: 646 APHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPD-EPGSE-------RHHPAPPP 697
A PP P PP D +PG++ + A P
Sbjct: 747 GARGAP----------GERGETGPPGPAG--FAGPPGADGQPGAKGEQGEAGQKGDAGAP 794
Query: 698 PPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEE 757
P P P Q P G+ P G ++ G+ P G
Sbjct: 795 GPQGPSGAPGPQGP--TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPG 852
Query: 758 EEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRG--PSEKGSSRDRAPAVAGA--FPLG 813
G+D D G P G LQG P EKG D P+ A P G
Sbjct: 853 PSGKDGPKGARGDS------GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 906
Query: 814 LNSSR----LLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPGSPVHHPSL 863
L R L + G+ G PG LP P P G P PV P L
Sbjct: 907 LAGQRGIVGLPGQRGERGFPG--LPGPSGEPGKQGAPGASGDRGPPGPVGPPGL 958
Score = 49.7 bits (117), Expect = 2e-05
Identities = 149/645 (23%), Positives = 184/645 (28%), Gaps = 114/645 (17%)
Query: 279 PHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSV 338
P G P PP PP PP G A FD+ A L +
Sbjct: 86 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEK---------AGGAQLGVMQGPMGP 136
Query: 339 AAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIP-------VPSKGSF 391
G G G G G G G +GP P P P K
Sbjct: 137 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE 196
Query: 392 GGV-----LQKFPGCGGL--------FPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAG 438
G + FPG GL +P A A + K ++G+ E
Sbjct: 197 RGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGV---KGESGSPGENGSPGP 253
Query: 439 AGGAGAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCA 498
G G + G +G AG + P P G P P P P A G A
Sbjct: 254 MGPRGLPGERGRTGPAGAAGARGNDGQP--------GPAGPPGPVGPAGGPGFPGAPG-A 304
Query: 499 LGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQP-------PQVVANGPGSGPPPPAGGA 551
GE A P GA G A P G+P P + PG+ P A G+
Sbjct: 305 KGE------------AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGS 352
Query: 552 GSRDAL-----FESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPA-PHHP 605
+ F P G G + G P G GP G PA P
Sbjct: 353 AGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGA 412
Query: 606 HLLEGRKAGGGSYHHSSAFRPVG-----------GKDDAESLAKLHGASAGAPHSAQTHP 654
G + G+ P+G G + LA GA S P
Sbjct: 413 PGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP 472
Query: 655 HHHHHPHHHHHHHHPPQPPSPLLL----LPPQPDEPGSE-----RHHPAPPPPPPPPPPP 705
+ P +P P L L +P + G + P P PP P
Sbjct: 473 --------KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQ 524
Query: 706 PLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDD----------EEEEQEVDVEGHKPPEGE 755
P G P G + E E ++ E G P G
Sbjct: 525 GARGQPGVMGFPGPKGAN----GEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGP 580
Query: 756 EEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFP--LG 813
E G + G P GG QG P E G+ P FP G
Sbjct: 581 AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQG-VPGEAGAPGLVGPRGERGFPGERG 639
Query: 814 LNSSRLLQ-EDGKLGDPGSDLPPPPPPPLAPQKASG--GGSSSPG 855
++ LQ G G PG+D P P P A G G PG
Sbjct: 640 SPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPG 684
Score = 49.7 bits (117), Expect = 2e-05
Identities = 96/402 (23%), Positives = 119/402 (29%), Gaps = 65/402 (16%)
Query: 255 PLSSVKAAAVAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDD 314
P + A A G G +GP P PP PP P + D
Sbjct: 814 PKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK--------------DGP 859
Query: 315 DDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGA 374
+ ++ A G G G G G+ G G
Sbjct: 860 KGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQ 919
Query: 375 KGPRSYPVIPVPSKGSFGGVLQKFPGCGGLF--PHPYTFPAAAAAFSLCHKKEDAGAAAE 432
+G R +P +P PS G G Q PG G P P P G A E
Sbjct: 920 RGERGFPGLPGPS-GEPG--KQGAPGASGDRGPPGPVGPPGL------------TGPAGE 964
Query: 433 ALGGAGAGGAGAAP-KAGLSGLFWPAGRKDAFYPPFCMFWPPRTPG--------GLPVPT 483
G G+ GA P + G +G+ G A P PP +PG G
Sbjct: 965 P-GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAP-GPPGSPGPAGPTGKQGDRGEA 1022
Query: 484 YLQPPPQPPSALGCALGESPALLRQAFLDLAEPG--------GAAGSAEAAPPPGQPPQV 535
Q P P G + P R + EPG G G PPG
Sbjct: 1023 GAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQ 1082
Query: 536 VANGPGS-----GPPPPAGGAGSRDAL-FESPPGGSGGDCSAGSTPPADSVAAAGAGAAA 589
A+GP GPP P G +G A P G G +G T PA G
Sbjct: 1083 GASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1142
Query: 590 AGSGPA---------GSRVPAPHHPHLLEGRKAGGGSYHHSS 622
GP G R P + +A GG H +
Sbjct: 1143 GPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDA 1184
Score = 43.1 bits (100), Expect = 0.002
Identities = 94/365 (25%), Positives = 118/365 (32%), Gaps = 92/365 (25%)
Query: 504 ALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPG 563
A+LR D+ +PG E PG +V GP GPP P G AG + P G
Sbjct: 19 AVLRCQGQDVRQPGPKGQKGE----PGDIKDIV--GP-KGPPGPQGPAGE-----QGPRG 66
Query: 564 GSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSA 623
G G+ P G GP G P P L GG++ A
Sbjct: 67 DRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGP----PGPPGL-------GGNF----A 111
Query: 624 FRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQP-----PSPLLL 678
+ GG D+ K GA G P PP P P
Sbjct: 112 AQMAGGFDE-----KAGGAQLGVMQG----------PMGPMGPRGPPGPAGAPGPQGFQG 156
Query: 679 LPPQPDEPGSERHHPAPPPPPPPPPPPP----LAQHPHHRGLLSPGGTSCC--YPSEDSS 732
P +P EPG P P PP PP P A P G P G +P
Sbjct: 157 NPGEPGEPGVS--GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGL 214
Query: 733 EDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRG 792
V+GH+ G + +G + + + G P G R L
Sbjct: 215 P-----------GVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGL---- 259
Query: 793 PSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSS 852
P E+G + P G +R G G PG P PP P+ P GG
Sbjct: 260 PGERGRTG----------PAGAAGAR-----GNDGQPG---PAGPPGPVGP----AGGPG 297
Query: 853 SPGSP 857
PG+P
Sbjct: 298 FPGAP 302
Score = 36.6 bits (83), Expect = 0.15
Identities = 115/476 (24%), Positives = 145/476 (30%), Gaps = 99/476 (20%)
Query: 423 KKEDAGAAAEALGGAGAGGA-GAAPKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPV 481
+K + G + +G G G G A + G G G K A P P TPG P
Sbjct: 36 QKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGA-PGPRGRDGEPGTPGN-PG 93
Query: 482 PTYLQPPPQPPSALGC-----------ALGESPALLRQAFLDLAEPGGAAGSAEAAPP-- 528
P PP PP G G + + Q + P G G A A P
Sbjct: 94 PPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQG 153
Query: 529 ----PGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAG 584
PG+P + +GP GP P G PPG G D AG A G
Sbjct: 154 FQGNPGEPGEPGVSGP-MGPRGPPG-----------PPGKPGDDGEAGKPGKAGERGPPG 201
Query: 585 AGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHG--A 642
A G G L G K R G D A+ A G
Sbjct: 202 PQGARGFPGTPG-----------LPGVK----------GHRGYPGLDGAKGEAGAPGVKG 240
Query: 643 SAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQ----PDEPGSERHHPAPPPP 698
+G+P + P P P L + P R + P P
Sbjct: 241 ESGSP-----------------GENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP 283
Query: 699 PPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEE 758
PP P A P G +PG P+ + E + E G P G
Sbjct: 284 AGPPGPVGPAGGPGFPG--APGAKGEAGPT-GARGPEGAQGPRGEPGTPGSPGPAGASGN 340
Query: 759 EGRDPDDDEEEDEETEVLLGDPLVGGGRFLQG----RGP-SEKGSSRDRAPAVAGAFPLG 813
G D + + G P G R G GP KG + + P +AG
Sbjct: 341 PGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGE--PGIAG----- 393
Query: 814 LNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPG--SPVHHPSLEEQP 867
E G G+PG P P P A ++ G PG P+ P P
Sbjct: 394 -----FKGEQGPKGEPGPAGPQGAPGP-AGEEGKRGARGEPGGVGPIGPPGERGAP 443
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 69.3 bits (168), Expect = 2e-11
Identities = 151/548 (27%), Positives = 175/548 (31%), Gaps = 85/548 (15%)
Query: 343 GGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGV----LQKF 398
G G G G G G G G +GP P P KG G LQ
Sbjct: 585 GNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPG-PTGPGGDKGDTGPPGPQGLQGL 643
Query: 399 PGCGGLFPHPYTFPAA------AAAFSLCHKKEDAGAAAEA--LGGAGA----GGAGAAP 446
PG GG P P A A K DAGA E G AGA GGAG
Sbjct: 644 PGTGGP-PGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPG 702
Query: 447 KAGLSGLFWPAGRKDAFYPPFCMFWPPRTPG-GLPVPTYLQPPPQPPSALGCALGESPAL 505
G G P G A P P G G P P + P P A G + P
Sbjct: 703 PEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGP-- 760
Query: 506 LRQAFLDLAEPG--GAAGSAEAAPPPGQPPQVVANG-PG----SGPPPPAGGAGSRDALF 558
R + PG G G PG P G PG +GPP PAG G+
Sbjct: 761 -RGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNG 819
Query: 559 ESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSY 618
E PGG G + G AG GSGPAG P P G G G+
Sbjct: 820 E--PGGKGERGAPGEKGEGGPPGVAGP---PGGSGPAGP--PGPQGVKGERGSPGGPGAA 872
Query: 619 HHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLL 678
A R + G + G S P + P SP +
Sbjct: 873 GFPGA-RGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGN-----------TGAPGSPGVS 920
Query: 679 LPP----QPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSED 734
P QP E GS P PP P P +A RGL P G S
Sbjct: 921 GPKGDAGQPGEKGS----PGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGV 976
Query: 735 EDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPS 794
+ + + + G + P G + G E + G+P G L GR S
Sbjct: 977 KGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRD------GNP---GSDGLPGRDGS 1027
Query: 795 EKGSSRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGG-GSSS 853
G DR E+G G PG+ P PP P+ P SG G S
Sbjct: 1028 PGGKG-DRG------------------ENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESG 1068
Query: 854 PGSPVHHP 861
P P P
Sbjct: 1069 PAGPAGAP 1076
Score = 66.2 bits (160), Expect = 2e-10
Identities = 160/630 (25%), Positives = 194/630 (30%), Gaps = 118/630 (18%)
Query: 272 GGGGLLGPHLLGAPPPP---PPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAAS 328
G GL G G PP P P P + AGAP A P D + E A
Sbjct: 636 GPQGLQGLPGTGGPPGENGKPGEPGPKGD-AGAPGA----PGGKGDAGAPGERGPPGLAG 690
Query: 329 LSAAAASLSVAAASGGAGTGG-----GGAGGGCVAGV-----GVGA-----------GAG 367
GG G G G AG + G+ G+G+ G G
Sbjct: 691 APGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPG 750
Query: 368 AGAGAGAKGPRSYPVIPVPSKGSFGGVLQK----FPGCGGLF--------------PHPY 409
A G GPR P P+ G G K PG G+ P P
Sbjct: 751 ADGVPGKDGPRG-PTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPA 809
Query: 410 TFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYPPFCM 469
FP A K + GA E G G AG +G +G P G K P
Sbjct: 810 GFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSP--- 866
Query: 470 FWPPRTPG-----GLPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPG--GAAGS 522
P G GLP P P PP G + P + PG G +G
Sbjct: 867 -GGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPP---GPAGNTGAPGSPGVSGP 922
Query: 523 AEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDAL-FESPPGGSGGDCSAGSTPPADSVA 581
A PG+ A GP G P P G AG A PPG G S G
Sbjct: 923 KGDAGQPGEKGSPGAQGP-PGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESG 981
Query: 582 AAGAGAAAAGSGPAGSR-VPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLH 640
GA + GP G + +P GR GS GGK D +
Sbjct: 982 KPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGD-----RGE 1036
Query: 641 GASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPP 700
S GAP + P H P PP P+ P +R P P
Sbjct: 1037 NGSPGAPGA----------PGH-------PGPPGPV-----GPAGKSGDRGESGPAGPAG 1074
Query: 701 PPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEG 760
P P P +G P G D+ + E ++GH+ G G
Sbjct: 1075 APGPAGSRGAPGPQG---PRG------------DKGETGERGAAGIKGHRGFPGNPGAPG 1119
Query: 761 RDPDDDEEEDEETEVLLGDPLVGGGRFLQG-RGPSEKGSSRDRAPAVAGAFPLGLNSSRL 819
++ +G P G R G GP K + + P G R
Sbjct: 1120 SPGPAGQQG------AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGER- 1172
Query: 820 LQEDGKLGDPGSDLPPPPPPPLAPQKASGG 849
+G G PG PP PP AP GG
Sbjct: 1173 -GSEGSPGHPGQPGPPGPPG--APGPCCGG 1199
Score = 63.2 bits (152), Expect = 2e-09
Identities = 160/634 (25%), Positives = 191/634 (30%), Gaps = 97/634 (15%)
Query: 264 VAAAAAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAV 323
V + AV G G GP A PP PP PP + G+P + P + +A
Sbjct: 160 VKSGVAVGGLAGYPGP----AGPPGPPGPPGTSGHPGSPGS----PGYQGPPGEPGQAGP 211
Query: 324 VAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVI 383
A A G +G G G G+ AG G KG R +
Sbjct: 212 SGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDG- 270
Query: 384 PVPSKGSFGGVLQK----FPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGA 439
KG G K PG G P P A + AA A G GA
Sbjct: 271 RNGEKGETGAPGLKGENGLPGENGA-PGPMGPRGAPGE----RGRPGLPGAAGARGNDGA 325
Query: 440 GGAGAAP-------------KAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQ 486
G+ P G G PAG + P R G Q
Sbjct: 326 RGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAP-----GQRGEPGPQGHAGAQ 380
Query: 487 PPPQPPSALGCALGE---SPALLRQA--FLDLAEPGGAAGSAEAAPPPGQPPQVVANGPG 541
PP PP G G+ PA + A + P G AG+ A G + NG
Sbjct: 381 GPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNG-A 439
Query: 542 SGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPA 601
G P P G G +A PG G D GS P + A G AA G G R PA
Sbjct: 440 KGEPGPRGERG--EAGIPGVPGAKGEDGKDGS--PGEP-GANGLPGAAGERGAPGFRGPA 494
Query: 602 PHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPH 661
P+ + G K G A P G P A P P
Sbjct: 495 --GPNGIPGEKGPAG---ERGAPGPAG------------------PRGAAGEPGRDGVPG 531
Query: 662 HHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGG 721
P P P +P PGS+ P PP P P P G P G
Sbjct: 532 GPGMRGMPGSPGGP--GSDGKPGPPGSQGESGRPGPPGPSGP----RGQPGVMGFPGPKG 585
Query: 722 TSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPL 781
+ G P+G G D + + L G P
Sbjct: 586 NDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPG 645
Query: 782 VGGGRFLQGRGPSEKGSSRDR-APAVAGA----------FPLGLNSSRLLQ----EDGKL 826
GG G+ P E G D AP G P GL + L+ G
Sbjct: 646 TGGPPGENGK-PGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPE 704
Query: 827 GDPGSDLPPPPP-----PPLAPQKASGGGSSSPG 855
G G+ PP PP P L GG SPG
Sbjct: 705 GGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPG 738
Score = 62.4 bits (150), Expect = 3e-09
Identities = 164/654 (25%), Positives = 201/654 (30%), Gaps = 117/654 (17%)
Query: 247 PGAHPACHPLSSVKAAAVAAAAAVAGGGGLLGPHLLGAP----PPPPPPPPPLAELAGAP 302
PG + A P+ A + G G G GA P PP PP A G+P
Sbjct: 290 PGENGAPGPMGPRGAPGERGRPGLPGAAGARGND--GARGSDGQPGPPGPPGTAGFPGSP 347
Query: 303 HAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGV 362
A + + A A A G G G G +G
Sbjct: 348 GAKGEVGPAGSPGSN-------GAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGP 400
Query: 363 GAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCH 422
GA GA+GP P + G GG + PG G P
Sbjct: 401 AGIPGAPGLMGARGPPG-PAGANGAPGLRGGAGE--PGKNGAKGEPGP------------ 445
Query: 423 KKEDAGAAAEALGGA-GAGGAGAAP-KAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLP 480
+ E A + GA G G +P + G +GL AG + A F P P G+P
Sbjct: 446 RGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGA-----PGFRGPAGPNGIP 500
Query: 481 ---VPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPG--GAAGSAEAAPPPGQPPQV 535
P + P P G A EPG G G PG P
Sbjct: 501 GEKGPAGERGAPGPAGPRGAA---------------GEPGRDGVPGGPGMRGMPGSPGGP 545
Query: 536 VANG----PGS-------GPPPPAGGAGSRDAL-FESPPGGS---------GGDCSAGST 574
++G PGS GPP P+G G + F P G GG G
Sbjct: 546 GSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQ 605
Query: 575 PPADSVAAAGAGAAAAGSGPAGSR-VPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDA 633
P G +GP G + P P L+G GG + G K DA
Sbjct: 606 GPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDA 665
Query: 634 ESLAKLHG-ASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHH 692
+ G AGAP + P P +P L P P +
Sbjct: 666 GAPGAPGGKGDAGAP--GERGP--------------PGLAGAPGLRGGAGPPGPEGGKGA 709
Query: 693 PAPPPPPPPPPPPPLAQHPHHR-GLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKP 751
PP PP P L P R GL SPG P D E + V G
Sbjct: 710 AGPPGPPGAAGTPGLQGMPGERGGLGSPG------PKGDKGEPGGPGAD----GVPGKDG 759
Query: 752 PEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPA-VAGA- 809
P G G + D+ G P + G R P E+G + PA GA
Sbjct: 760 PRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPR----GSPGERGETGPPGPAGFPGAP 815
Query: 810 ----FPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASG--GGSSSPGSP 857
P G E G+ G PG PP P P G G SPG P
Sbjct: 816 GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGP 869
Score = 54.7 bits (130), Expect = 5e-07
Identities = 167/705 (23%), Positives = 206/705 (29%), Gaps = 140/705 (19%)
Query: 236 NGGSRKRALPQPGAHPACH-PLSSVKAAAVAAAAAVAGGGGLLG-PHLLGAPPPPPPP-- 291
NG +R P P H P G G+ G P L+GA PP P
Sbjct: 362 NGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGA 421
Query: 292 --PPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGG 349
P L AG P + + + E + A + G G G
Sbjct: 422 NGAPGLRGGAGEPGKNGAK----GEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANG 477
Query: 350 GGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPS--KGSFGGVLQKFPGCGGL--F 405
G G AG G KGP P P+ +G+ G PG G+
Sbjct: 478 LPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGE-----PGRDGVPGG 532
Query: 406 PHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAAPKAGLSGLFWPAGRKDAFYP 465
P P + K G+ E+ G +G + G+ G P G A
Sbjct: 533 PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGA--- 589
Query: 466 PFCMFWPPRT-----PGGLPVPTYLQPPPQ-PPSALGCALGESPALLRQAFLDLAEPGGA 519
P + PGG P PQ PP G + P P G
Sbjct: 590 ------PGKNGERGGPGG--------PGPQGPPGKNGETGPQGPP----------GPTGP 625
Query: 520 AGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSR-----DALFESPPGGSGGDCSAGST 574
G PPG PQ + PG+G PP G DA PGG G + G
Sbjct: 626 GGDKGDTGPPG--PQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGER 683
Query: 575 PPADSVAAAGAGAAAAGSGPAGSRVPA--PHHPHL--------LEGRKAGGGS------- 617
P A G A GP G + A P P + G + G GS
Sbjct: 684 GPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDK 743
Query: 618 -YHHSSAFRPVGGKDDAESLA--------------KLHGASAGAPHSAQTHPHHHHHPHH 662
V GKD K G + G P A P
Sbjct: 744 GEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIA--------GPRG 795
Query: 663 HHHHHHPPQPPSPLLL--LPPQPDEPGSERHHPAP-------PPPPPPPP-------PPP 706
PP P P Q EPG + AP PP PP PP
Sbjct: 796 SPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPG 855
Query: 707 LAQHPHHRGLLSPGGTSCC-YPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDD 765
RG SPGG +P G+ P G G+D
Sbjct: 856 PQGVKGERG--SPGGPGAAGFPGARGLPGPPGS--------NGNPGPPGPSGSPGKDGPP 905
Query: 766 DEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLLQEDGK 825
+ G P V G + G+ P EKGS + P A PLG+ + + G
Sbjct: 906 GPAGNTGAP---GSPGVSGPKGDAGQ-PGEKGSPGAQGPPGAPG-PLGI--AGITGARGL 958
Query: 826 LGDPGSDLPPPPPPPLAPQKASG-------GGSSSPGSPVHHPSL 863
G PG P P P + SG G P P P L
Sbjct: 959 AGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGL 1003
Score = 49.7 bits (117), Expect = 2e-05
Identities = 105/413 (25%), Positives = 122/413 (29%), Gaps = 73/413 (17%)
Query: 237 GGSRKRALPQPGAHPACHPLSSVKAAAVAAAAAVAGGGGLLG-PHLLGAPPPP-----PP 290
GG A P G+ PA P V GG G G P G P PP P
Sbjct: 836 GGPPGVAGPPGGSGPAGPP----GPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPG 891
Query: 291 PPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGG 350
PP P +G+P D + +S G G G
Sbjct: 892 PPGP----SGSPGK-------DGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGP 940
Query: 351 GAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLF----- 405
G + G+ G G GPR P P KG G PG GL
Sbjct: 941 PGAPGPLGIAGITGARGLAGPPGMPGPRGSPG-PQGVKGESGK-----PGANGLSGERGP 994
Query: 406 PHPYTFPAAAAAFSLCHKKEDAGAAAEAL-------GGAGAGGAGAAPKA-------GLS 451
P P P A D ++ L GG G G +P A G
Sbjct: 995 PGPQGLPGLAGTAG--EPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPP 1052
Query: 452 GLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQ--PPPQPPSALGCALGESPALLRQA 509
G PAG+ P P G P P + P PQ P GE A +
Sbjct: 1053 GPVGPAGKSGDRGES-----GPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKG 1107
Query: 510 FLDL-------AEPG-----GAAGSAEAAPP-----PGQPPQVVANGPGSGPPPPAGGAG 552
PG GA GS A P P PP GP P G G
Sbjct: 1108 HRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRG 1167
Query: 553 SRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAA-AGSGPAGSRVPAPHH 604
+R G G P A G GAAA AG G + AP++
Sbjct: 1168 NRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFAPYY 1220
Score = 45.4 bits (106), Expect = 3e-04
Identities = 114/471 (24%), Positives = 141/471 (29%), Gaps = 102/471 (21%)
Query: 472 PPRTPG-----GLPVPTYLQPPPQPPSAL-GCALGE---SPALLRQAFLDLAEPGGAAGS 522
PP PG G+P P PP C G SP GG AG
Sbjct: 113 PPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGY 172
Query: 523 AEAAPPPGQP-PQVVANGPGS-------GPPPPAGGAGSRDALFESPPGGSGGDCSAGST 574
A PPG P P + PGS GPP G AG PPG G +G
Sbjct: 173 PGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGP-----SGPPGPPGAIGPSGPA 227
Query: 575 PPADSVAAAGAGAAAAGSGPAGSRVPA--PHHPHLLEGRKAGGGSYHHSSAFRP------ 626
G GP G + PA P P + R G + P
Sbjct: 228 GKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGEN 287
Query: 627 -VGGKDDAESLAKLHGASA-----GAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLL-- 678
+ G++ A GA G P +A + PP PP
Sbjct: 288 GLPGENGAPGPMGPRGAPGERGRPGLPGAAGA--RGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 679 ------------------LPPQPDEPGSERHHPAPPPPPPP-----------PPPPPLAQ 709
P Q EPG + H A PP PP P +
Sbjct: 346 SPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG 405
Query: 710 HPHHRGLLSPGGTS-----------CCYPSEDSSEDEDDEEEEQ-EVDVEGHKPPEGEEE 757
P G P G + P ++ ++ E E+ E + G G +
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPG---VPGAKG 462
Query: 758 EEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRG--PSEKGSSRDR-APAVAGAFPLGL 814
E+G+D E G+ G R G P EKG + +R AP AG
Sbjct: 463 EDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAG 522
Query: 815 NSSR--------LLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPGSP 857
R + G G PGSD P PP S G S PG P
Sbjct: 523 EPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPP-------GSQGESGRPGPP 566
Score = 41.6 bits (96), Expect = 0.005
Identities = 91/359 (25%), Positives = 101/359 (28%), Gaps = 88/359 (24%)
Query: 522 SAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSG-----GDCSAGSTPP 576
+A PP GQ PQ GP P PP + D PG G G C + T P
Sbjct: 93 TAPTRPPNGQGPQ----GPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGP 148
Query: 577 A---------DSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPV 627
D + G A GPAG P P P G GS + P
Sbjct: 149 QNYSPQYDSYDVKSGVAVGGLAGYPGPAGP--PGPPGPPGTSGHPGSPGSPGYQG---PP 203
Query: 628 GGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPP------ 681
G A G S PP PP + P
Sbjct: 204 GEPGQA-------GPSG------------------------PPGPPGAIGPSGPAGKDGE 232
Query: 682 --QPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEE 739
+P PG ER P PP P P HRG G E + E
Sbjct: 233 SGRPGRPG-ERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEK----GETGAPGLKGEN 287
Query: 740 E-EQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGS 798
E G P G E GR G P G R G S+
Sbjct: 288 GLPGENGAPGPMGPRGAPGERGRP---------------GLPGAAGARGNDGARGSDGQP 332
Query: 799 SRDRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPGSP 857
P AG FP S E G G PGS+ P PQ G PG P
Sbjct: 333 GPPGPPGTAG-FP---GSPGAKGEVGPAGSPGSNGAPGQRGEPGPQ-GHAGAQGPPGPP 386
Score = 31.6 bits (70), Expect = 5.0
Identities = 48/189 (25%), Positives = 61/189 (32%), Gaps = 29/189 (15%)
Query: 670 PQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGG--TSCCYP 727
PQPP+ PP P + P PP P P + P G P G SC
Sbjct: 89 PQPPTAPTR-PPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTG 147
Query: 728 SEDSSEDEDDEEEEQEVDV---EGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGG 784
++ S D + + V V G+ P G G G P G
Sbjct: 148 PQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTS------------GHPGSPG 195
Query: 785 GRFLQGRGPSEKGSSRDRAP-----AVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPP 839
QG P E G + P A+ + P G + E G+ G PG P PP
Sbjct: 196 SPGYQG-PPGEPGQAGPSGPPGPPGAIGPSGPAGKDG-----ESGRPGRPGERGLPGPPG 249
Query: 840 PLAPQKASG 848
P G
Sbjct: 250 IKGPAGIPG 258
Score = 31.2 bits (69), Expect = 6.5
Identities = 46/179 (25%), Positives = 57/179 (31%), Gaps = 16/179 (8%)
Query: 681 PQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEE 740
P P+ P E P PP P PP +G P G P + D
Sbjct: 75 PNPEIPFGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPG----IPGRNG-----DPGI 125
Query: 741 EQEVDVEGHKPPEGEEEEEGRDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSR 800
+ G P G E P + + + +V G VGG L G P G
Sbjct: 126 PGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSG-VAVGG---LAGY-PGPAGPPG 180
Query: 801 DRAPAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASG--GGSSSPGSP 857
P P S G+ G G PP PP + P +G G S PG P
Sbjct: 181 PPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRP 239
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,398,840
Number of Sequences: 37866
Number of extensions: 5184239
Number of successful extensions: 130634
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 1801
Number of HSP's that attempted gapping in prelim test: 39733
Number of HSP's gapped (non-prelim): 50354
length of query: 1252
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1138
effective length of database: 13,930,794
effective search space: 15853243572
effective search space used: 15853243572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.