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Search of human proteins with 239747320
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747320 PREDICTED: forkhead box protein O6 [Homo sapiens]
(589 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747320 PREDICTED: forkhead box protein O6 [Homo sapiens] 1233 0.0
gi|239741142 PREDICTED: forkhead box protein O6 [Homo sapiens] 337 1e-92
gi|239752748 PREDICTED: similar to forkhead box O6 [Homo sapiens] 279 4e-75
gi|103472003 forkhead box O4 [Homo sapiens] 190 4e-48
gi|42519916 forkhead box O3A [Homo sapiens] 145 1e-34
gi|4503739 forkhead box O3A [Homo sapiens] 145 1e-34
gi|9257222 forkhead box O1 [Homo sapiens] 141 2e-33
gi|24497501 forkhead box A1 [Homo sapiens] 57 6e-08
gi|195947376 forkhead box I2 [Homo sapiens] 54 5e-07
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 51 3e-06
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 51 3e-06
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 51 3e-06
gi|22779860 forkhead box L1 [Homo sapiens] 51 3e-06
gi|110832843 TBP-associated factor 4 [Homo sapiens] 50 4e-06
gi|50345831 forkhead box J3 [Homo sapiens] 50 6e-06
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 49 1e-05
gi|8923842 forkhead box J2 [Homo sapiens] 49 1e-05
gi|39812378 RAN binding protein 9 [Homo sapiens] 48 2e-05
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 48 2e-05
gi|134142824 forkhead box D2 [Homo sapiens] 48 2e-05
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 47 4e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 47 6e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 47 6e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 47 6e-05
gi|160707881 formin 2 [Homo sapiens] 47 6e-05
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 47 6e-05
gi|24497506 forkhead box A3 [Homo sapiens] 47 6e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 46 8e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 46 8e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 46 8e-05
>gi|239747320 PREDICTED: forkhead box protein O6 [Homo sapiens]
Length = 589
Score = 1233 bits (3189), Expect = 0.0
Identities = 589/589 (100%), Positives = 589/589 (100%)
Query: 1 MAAKLRAHQVDVDPDFAPQSRPRSCTWPLPQPDLAGDEDGALGAGVAEGAEDCGPERRAT 60
MAAKLRAHQVDVDPDFAPQSRPRSCTWPLPQPDLAGDEDGALGAGVAEGAEDCGPERRAT
Sbjct: 1 MAAKLRAHQVDVDPDFAPQSRPRSCTWPLPQPDLAGDEDGALGAGVAEGAEDCGPERRAT 60
Query: 61 APAMAPAPPLGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVR 120
APAMAPAPPLGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVR
Sbjct: 61 APAMAPAPPLGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVR 120
Query: 121 YVPYFKDKGDSNSSAGWKVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTE 180
YVPYFKDKGDSNSSAGWKVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTE
Sbjct: 121 YVPYFKDKGDSNSSAGWKVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTE 180
Query: 181 SCSSRAPSSSFVLRGSPAPRADGGGEVTFPEVATCEVVDLGIGPQARAFSVPLGASLQGW 240
SCSSRAPSSSFVLRGSPAPRADGGGEVTFPEVATCEVVDLGIGPQARAFSVPLGASLQGW
Sbjct: 181 SCSSRAPSSSFVLRGSPAPRADGGGEVTFPEVATCEVVDLGIGPQARAFSVPLGASLQGW 240
Query: 241 GTAAGPSPELGSGQGWLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTP 300
GTAAGPSPELGSGQGWLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTP
Sbjct: 241 GTAAGPSPELGSGQGWLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTP 300
Query: 301 DGRANGLPRALNQGLQRTRQGKAGKSQLLPSKARKCQRQGAWGPEESDQCLELGQYLDQE 360
DGRANGLPRALNQGLQRTRQGKAGKSQLLPSKARKCQRQGAWGPEESDQCLELGQYLDQE
Sbjct: 301 DGRANGLPRALNQGLQRTRQGKAGKSQLLPSKARKCQRQGAWGPEESDQCLELGQYLDQE 360
Query: 361 VEATRTGLAKAGSDMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATHCGDFEKAPTARGL 420
VEATRTGLAKAGSDMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATHCGDFEKAPTARGL
Sbjct: 361 VEATRTGLAKAGSDMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATHCGDFEKAPTARGL 420
Query: 421 EGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMT 480
EGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMT
Sbjct: 421 EGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMT 480
Query: 481 LPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFPADLDLDMFS 540
LPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFPADLDLDMFS
Sbjct: 481 LPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFPADLDLDMFS 540
Query: 541 GSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPPNQSWVPG 589
GSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPPNQSWVPG
Sbjct: 541 GSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPPNQSWVPG 589
>gi|239741142 PREDICTED: forkhead box protein O6 [Homo sapiens]
Length = 492
Score = 337 bits (865), Expect = 1e-92
Identities = 163/170 (95%), Positives = 164/170 (96%)
Query: 420 LEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLM 479
L+G Q P PAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLM
Sbjct: 323 LDGAQDAYGPRPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLM 382
Query: 480 TLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFPADLDLDMF 539
TLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFPADLDLDMF
Sbjct: 383 TLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFPADLDLDMF 442
Query: 540 SGSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPPNQSWVPG 589
SGSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPPNQSWVPG
Sbjct: 443 SGSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPPNQSWVPG 492
Score = 289 bits (739), Expect = 6e-78
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MAAKLRAHQVDVDPDFAPQSRPRSCTWPLPQPDLAGDEDGALGAGVAEGAEDCGPERRAT 60
MAAKLRAHQVDVDPDFAPQSRPRSCTWPLPQPDLAGDEDGALGAGVAEGAEDCGPERRAT
Sbjct: 1 MAAKLRAHQVDVDPDFAPQSRPRSCTWPLPQPDLAGDEDGALGAGVAEGAEDCGPERRAT 60
Query: 61 APAMAPAPPLGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVR 120
APAMAPAPPLGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVR
Sbjct: 61 APAMAPAPPLGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVR 120
Query: 121 YVPYFKDKGDSNSSAGWK 138
YVPYFKDKGDSNSSAGWK
Sbjct: 121 YVPYFKDKGDSNSSAGWK 138
>gi|239752748 PREDICTED: similar to forkhead box O6 [Homo sapiens]
Length = 562
Score = 279 bits (714), Expect = 4e-75
Identities = 134/137 (97%), Positives = 134/137 (97%)
Query: 2 AAKLRAHQVDVDPDFAPQSRPRSCTWPLPQPDLAGDEDGALGAGVAEGAEDCGPERRATA 61
AAKLRAH VDVDPDFAPQSRP S TWPLPQPDLAGDEDGALGAGVAEGAEDCGPERRATA
Sbjct: 179 AAKLRAHHVDVDPDFAPQSRPHSSTWPLPQPDLAGDEDGALGAGVAEGAEDCGPERRATA 238
Query: 62 PAMAPAPPLGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVRY 121
PAMAPAPPLGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVRY
Sbjct: 239 PAMAPAPPLGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVRY 298
Query: 122 VPYFKDKGDSNSSAGWK 138
VPYFKDKGDSNSSAGWK
Sbjct: 299 VPYFKDKGDSNSSAGWK 315
Score = 114 bits (285), Expect = 3e-25
Identities = 83/180 (46%), Positives = 90/180 (50%), Gaps = 30/180 (16%)
Query: 430 PPAPRPGPVLGAPGELALAGAAAA-------------YPGKGAAPYAPPAPSRSALAHPI 476
P AP PGPV A A + A+ P G A + ALA P
Sbjct: 393 PSAPAPGPVPAAAKWAASPASHASDDYEAWADFRGGGRPLLGEAAELEDDEALEALA-PS 451
Query: 477 SLMTLPGEAGAA----GLAPPGHA---AAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDR 529
S + P A A G PG A GGP G G A G L A D
Sbjct: 452 SPLMYPSPASALSPALGSRCPGELPRLAELGGPLG-----LHGGGGAGLPEGLLDGAQDA 506
Query: 530 FPADLDLDMFSGSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPPNQSWVPG 589
+ +G+LECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPPNQSWVPG
Sbjct: 507 YGPRAR----AGTLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPPNQSWVPG 562
>gi|103472003 forkhead box O4 [Homo sapiens]
Length = 505
Score = 190 bits (482), Expect = 4e-48
Identities = 185/588 (31%), Positives = 253/588 (43%), Gaps = 132/588 (22%)
Query: 10 VDVDPDFAPQSRPRSCTWPLPQPDLAGD--EDGALGAGVAEGAEDCGPERRATAPAMAPA 67
+D+DPDF PQSRPRSCTWPLP+P++A E + + E G P+ P
Sbjct: 16 IDLDPDFEPQSRPRSCTWPLPRPEIANQPSEPPEVEPDLGEKVHTEGRSEPILLPSRLPE 75
Query: 68 PP-------LGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVR 120
P LGA GP + SRRNAWGN SYA+LI++AIESAP+KRLTL+QIY+WMVR
Sbjct: 76 PAGGPQPGILGAVTGP--RKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVR 133
Query: 121 YVPYFKDKGDSNSSAGWKVGASGWGGGWGRRLGLPGAARCVGLQE---GRQKEGFLAPPG 177
VPYFKDKGDSNSSAGWK R L ++ + + G+ L P G
Sbjct: 134 TVPYFKDKGDSNSSAGWKNSI---------RHNLSLHSKFIKVHNEATGKSSWWMLNPEG 184
Query: 178 VTESCSSRAP--------SSSFVLRG-SPAPRADGGGEVTFPEVATCEVVDLGIGPQARA 228
S +AP SSS +LRG S AP+ P V L P+
Sbjct: 185 ---GKSGKAPRRRAASMDSSSKLLRGRSKAPKKK-------PSV-------LPAPPEGAT 227
Query: 229 FSVPLGASLQGWGTAAGPSPELGSGQGWLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQ 288
+ P+G + G+ + E W F P S+++ S+ ++ + +
Sbjct: 228 PTSPVGHFAKWSGSPCSRNRE--EADMWTTFRPRSSSNASSVSTRLSP--------LRPE 277
Query: 289 EEAWTENLNFTPDGRANGLPRALNQGLQRTRQGKAGKSQLLPSKARKCQRQGAWGPEESD 348
E E + + A G+P LN+GL+ S L S
Sbjct: 278 SEVLAEEIPASVSSYAGGVPPTLNEGLELLDGLNLTSSHSLLS----------------- 320
Query: 349 QCLELGQYLDQEVEATRTGLAKAG-SDMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATH 407
R+GL+ G TG H+ + +F G +
Sbjct: 321 ----------------RSGLSGFSLQHPGVTGPLHT--------YSSSLFSPAEGPLSAG 356
Query: 408 CGDFEKAPTARGLEGRQVVPPPPPA----PRPGPVLG-APGELALAG---AAAAYPGKGA 459
G F + L PPPPA + P+L AP L L G ++ G G
Sbjct: 357 EGCFSSSQALEALLTSDT--PPPPADVLMTQVDPILSQAPTLLLLGGLPSSSKLATGVGL 414
Query: 460 APYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAA 519
P AP S+L +S++ P +A + P L L P A
Sbjct: 415 CPKPLEAPGPSSLVPTLSMIAPPPVMASAPI------------PKALGTPVLTPPTEA-- 460
Query: 520 AGPLGAAPDRFPADLDLDMFSGSLECDVESIILNDFMDSDE-MDFNFD 566
A+ DR P DLDLDM+ +LECD+++II +D MD E +DFNF+
Sbjct: 461 -----ASQDRMPQDLDLDMYMENLECDMDNII-SDLMDEGEGLDFNFE 502
>gi|42519916 forkhead box O3A [Homo sapiens]
Length = 673
Score = 145 bits (365), Expect = 1e-34
Identities = 91/199 (45%), Positives = 106/199 (53%), Gaps = 63/199 (31%)
Query: 3 AKLRAHQVDVDPDFAPQSRPRSCTWPLPQPDLAG-----------------------DED 39
A L +V++DP+F PQSRPRSCTWPL +P+L DED
Sbjct: 9 APLSPLEVELDPEFEPQSRPRSCTWPLQRPELQASPAKPSGETAADSMIPEEEDDEDDED 68
Query: 40 G--------ALGAG------------------VAEGAEDCGPERRATAPAMA-------- 65
G A+G G +A G +D G A ++
Sbjct: 69 GGGRAGSAMAIGGGGGSGTLGSGLLLEDSARVLAPGGQDPGSGPATAAGGLSGGTQALLQ 128
Query: 66 -----PAPPLGAEVGPLRKAK-SSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMV 119
P P GA G + K SSRRNAWGNLSYADLIT+AIES+PDKRLTLSQIY+WMV
Sbjct: 129 PQQPLPPPQPGAAGGSGQPRKCSSRRNAWGNLSYADLITRAIESSPDKRLTLSQIYEWMV 188
Query: 120 RYVPYFKDKGDSNSSAGWK 138
R VPYFKDKGDSNSSAGWK
Sbjct: 189 RCVPYFKDKGDSNSSAGWK 207
Score = 72.0 bits (175), Expect = 1e-12
Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 10/92 (10%)
Query: 507 LLDALPGP--YAAAAAGPLGAAPDRFPADLDLDMFSGSLECDVESIILNDFMDSDEMDFN 564
L D+L G Y+ +A P+ ++FP+DLDLDMF+GSLECD+ESII ++ MD+D +DFN
Sbjct: 583 LSDSLSGSSLYSTSANLPV-MGHEKFPSDLDLDMFNGSLECDMESIIRSELMDADGLDFN 641
Query: 565 FDSALPPP------PPGLAGA-PPPNQSWVPG 589
FDS + GA +QSWVPG
Sbjct: 642 FDSLISTQNVVGLNVGNFTGAKQASSQSWVPG 673
>gi|4503739 forkhead box O3A [Homo sapiens]
Length = 673
Score = 145 bits (365), Expect = 1e-34
Identities = 91/199 (45%), Positives = 106/199 (53%), Gaps = 63/199 (31%)
Query: 3 AKLRAHQVDVDPDFAPQSRPRSCTWPLPQPDLAG-----------------------DED 39
A L +V++DP+F PQSRPRSCTWPL +P+L DED
Sbjct: 9 APLSPLEVELDPEFEPQSRPRSCTWPLQRPELQASPAKPSGETAADSMIPEEEDDEDDED 68
Query: 40 G--------ALGAG------------------VAEGAEDCGPERRATAPAMA-------- 65
G A+G G +A G +D G A ++
Sbjct: 69 GGGRAGSAMAIGGGGGSGTLGSGLLLEDSARVLAPGGQDPGSGPATAAGGLSGGTQALLQ 128
Query: 66 -----PAPPLGAEVGPLRKAK-SSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMV 119
P P GA G + K SSRRNAWGNLSYADLIT+AIES+PDKRLTLSQIY+WMV
Sbjct: 129 PQQPLPPPQPGAAGGSGQPRKCSSRRNAWGNLSYADLITRAIESSPDKRLTLSQIYEWMV 188
Query: 120 RYVPYFKDKGDSNSSAGWK 138
R VPYFKDKGDSNSSAGWK
Sbjct: 189 RCVPYFKDKGDSNSSAGWK 207
Score = 72.0 bits (175), Expect = 1e-12
Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 10/92 (10%)
Query: 507 LLDALPGP--YAAAAAGPLGAAPDRFPADLDLDMFSGSLECDVESIILNDFMDSDEMDFN 564
L D+L G Y+ +A P+ ++FP+DLDLDMF+GSLECD+ESII ++ MD+D +DFN
Sbjct: 583 LSDSLSGSSLYSTSANLPV-MGHEKFPSDLDLDMFNGSLECDMESIIRSELMDADGLDFN 641
Query: 565 FDSALPPP------PPGLAGA-PPPNQSWVPG 589
FDS + GA +QSWVPG
Sbjct: 642 FDSLISTQNVVGLNVGNFTGAKQASSQSWVPG 673
>gi|9257222 forkhead box O1 [Homo sapiens]
Length = 655
Score = 141 bits (355), Expect = 2e-33
Identities = 88/203 (43%), Positives = 100/203 (49%), Gaps = 74/203 (36%)
Query: 10 VDVDPDFAPQSRPRSCTWPLPQPDL----------------AGDEDGALGAGVAEGA--- 50
V++DPDF P RPRSCTWPLP+P+ A + D A G A A
Sbjct: 8 VEIDPDFEPLPRPRSCTWPLPRPEFSQSNSATSSPAPSGSAAANPDAAAGLPSASAAAVS 67
Query: 51 -------------ED------------------------CGPERRATAPAMAPAPPLGAE 73
ED CG + A + PAPP
Sbjct: 68 ADFMSNLSLLEESEDFPQAPGSVAAAVAAAAAAAATGGLCGDFQGPEAGCLHPAPPQPPP 127
Query: 74 VGPL------------------RKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIY 115
GPL RK+ SSRRNAWGNLSYADLITKAIES+ +KRLTLSQIY
Sbjct: 128 PGPLSQHPPVPPAAAGPLAGQPRKSSSSRRNAWGNLSYADLITKAIESSAEKRLTLSQIY 187
Query: 116 DWMVRYVPYFKDKGDSNSSAGWK 138
+WMV+ VPYFKDKGDSNSSAGWK
Sbjct: 188 EWMVKSVPYFKDKGDSNSSAGWK 210
Score = 54.7 bits (130), Expect = 2e-07
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 528 DRFPADLDLDMFSGSLECDVESIILNDFMDSDEMDFNFDSALP 570
++ P+DLD MF L+CD+ESII ND MD D +DFNFD+ LP
Sbjct: 596 EKLPSDLD-GMFIERLDCDMESIIRNDLMDGDTLDFNFDNVLP 637
Score = 33.1 bits (74), Expect = 0.73
Identities = 43/143 (30%), Positives = 48/143 (33%), Gaps = 31/143 (21%)
Query: 410 DFEKAPTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAA-PYAPPAPS 468
DFE P R P P P A A +G+AAA P A P A A
Sbjct: 13 DFEPLPRPRSCTW------PLPRPEFSQSNSATSSPAPSGSAAANPDAAAGLPSASAAAV 66
Query: 469 RSALAHPISLMT-------LPGE------AGAAGLAPPGHAAAFGGPPGGLLLDALP--- 512
+ +SL+ PG A AA A G F GP G L A P
Sbjct: 67 SADFMSNLSLLEESEDFPQAPGSVAAAVAAAAAAAATGGLCGDFQGPEAGCLHPAPPQPP 126
Query: 513 --------GPYAAAAAGPLGAAP 527
P AAAGPL P
Sbjct: 127 PPGPLSQHPPVPPAAAGPLAGQP 149
>gi|24497501 forkhead box A1 [Homo sapiens]
Length = 472
Score = 56.6 bits (135), Expect = 6e-08
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 40 GALGAGVAEGAEDCGPERRATAPAMAPAPPLGAEVGPLRKA--------KSSRRNAWGNL 91
GA+GA A GP A P M+P + +G R K S +A
Sbjct: 114 GAMGAQQAASMNGLGPYAAAMNPCMSPMAYAPSNLGRSRAGGGGDAKTFKRSYPHAKPPY 173
Query: 92 SYADLITKAIESAPDKRLTLSQIYDWMVRYVPYFK 126
SY LIT AI+ AP K LTLS+IY W++ PY++
Sbjct: 174 SYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYR 208
>gi|195947376 forkhead box I2 [Homo sapiens]
Length = 318
Score = 53.5 bits (127), Expect = 5e-07
Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 31/150 (20%)
Query: 11 DVDPDFAPQSRPRSCTWPLPQPDLAGDEDGALGAG--VAEGAEDCGPERRATAPAMAP-- 66
D+ P AP + ++ P P + GA+G G + A P+ A+ P AP
Sbjct: 7 DLGPSSAPPGQAQATAHP---PGYEPGDLGAVGGGPLLWVNAPALSPKSYASGPGPAPPY 63
Query: 67 -APPLGAEVGPLRKAKSSRRNA---WGNLS--------------YADLITKAIESAPDKR 108
AP GA GPL A A W +LS Y+ LI AI+SAP ++
Sbjct: 64 AAPSYGAP-GPLLGAPGGLAGADLAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAPLRK 122
Query: 109 LTLSQIYDWMVRYVPYFKDKGDSNSSAGWK 138
LTLSQIY ++ P++K S AGW+
Sbjct: 123 LTLSQIYQYVAGNFPFYK-----RSKAGWQ 147
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 50.8 bits (120), Expect = 3e-06
Identities = 43/118 (36%), Positives = 49/118 (41%), Gaps = 25/118 (21%)
Query: 415 PTARGLEGRQVVPPPPPAP---RPGPVLGAPGELALAGAAAAYPGKG-AAPYAPPAPSRS 470
P G EG + P PP AP P + G PGE L G A KG P PP P+ S
Sbjct: 871 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGS 930
Query: 471 ALAHPISLMTLPGEAGAAG----LAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLG 524
PGE GAAG + PPG GPPG +PG GP+G
Sbjct: 931 -----------PGERGAAGSGGPIGPPGRPGP-QGPPGAAGEKGVPG-----EKGPIG 971
Score = 45.8 bits (107), Expect = 1e-04
Identities = 42/127 (33%), Positives = 50/127 (39%), Gaps = 24/127 (18%)
Query: 415 PTAR-GLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALA 473
PT R G++G +P P P G GE+ G KG + PP P
Sbjct: 972 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGE--HGPPGPPG---- 1025
Query: 474 HPISLMTLPGEAGAAG----LAPPGHAAA--------FGGPPGGLLLDALPGPYA----A 517
PI + PG AGA G P GH A F GPPG + L LPGP
Sbjct: 1026 -PIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGET 1084
Query: 518 AAAGPLG 524
GP+G
Sbjct: 1085 GDVGPMG 1091
Score = 40.0 bits (92), Expect = 0.006
Identities = 38/94 (40%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 435 PGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGLA-PP 493
PGP G PGE L G A KG P P AP + P L PGE G G A P
Sbjct: 859 PGPP-GPPGEQGLPGTAGKEGTKGD-PGPPGAPGKDG---PAGLRGFPGERGLPGTAGGP 913
Query: 494 GHAAAFG--GPPGGLLLDALPGPY-AAAAAGPLG 524
G G GPPG PG AA + GP+G
Sbjct: 914 GLKGNEGPSGPPGPA---GSPGERGAAGSGGPIG 944
Score = 39.3 bits (90), Expect = 0.010
Identities = 46/143 (32%), Positives = 55/143 (38%), Gaps = 43/143 (30%)
Query: 415 PTARGLEGRQ-VVPPPPPAPRPGP--VLGAPGELALAGAAAAYPGKGA-APYAPP----- 465
P A G G+ V P PA +PGP + G PG + G A G P PP
Sbjct: 1255 PGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGL 1314
Query: 466 ---APSRSALAHP--ISLMTLPGEAGAAG----------------LAPPGHAAAF--GGP 502
A ++ HP I L+ PGE G G + PG + GGP
Sbjct: 1315 RGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGP 1374
Query: 503 PGGLLLDALPGPYAAAAAGPLGA 525
PG LPGP AGP GA
Sbjct: 1375 PG------LPGP-----AGPKGA 1386
Score = 38.9 bits (89), Expect = 0.013
Identities = 39/118 (33%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 417 ARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAA------YPGKGAA--PYAPPAPS 468
A+G G P P +P P G PG L G A + GKGA P A AP
Sbjct: 1203 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1262
Query: 469 RSALAHPISLMTLPGEAGAAGL----APPGHAAAFG--GPPGGLLLDALPGPYAAAAA 520
++ P PG G GL G A G GPPG + LPG A A
Sbjct: 1263 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGA 1320
Score = 34.7 bits (78), Expect = 0.25
Identities = 35/112 (31%), Positives = 41/112 (36%), Gaps = 20/112 (17%)
Query: 415 PTARGLEGRQVVPPPPPAPRP-GPV-----LGAPGELALAGAAAAYPGKGA-------AP 461
P +G +G + PP P P GPV GA GE G + KG P
Sbjct: 1006 PGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGP 1065
Query: 462 YAP------PAPS-RSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGL 506
P P PS + M PG G G A P A GPPGG+
Sbjct: 1066 PGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGV 1117
Score = 32.3 bits (72), Expect = 1.3
Identities = 27/85 (31%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 440 GAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAF 499
G PGE G A P P I LPGE+G GL P
Sbjct: 479 GLPGEKGHRGDTGAQ----GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGI 534
Query: 500 GGPPGGLLLDALPGPYAAAAAGPLG 524
GPPG +D GP + GP G
Sbjct: 535 PGPPGVRGMDGPQGP--KGSLGPQG 557
Score = 32.0 bits (71), Expect = 1.6
Identities = 35/105 (33%), Positives = 37/105 (35%), Gaps = 23/105 (21%)
Query: 430 PPAP-----RPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGE 484
PP P RPGP LG PG L G + P P P L PG+
Sbjct: 402 PPGPMGYTGRPGP-LGQPGSPGLKGESG-----DLGPQGPRGPQ--------GLTGPPGK 447
Query: 485 AGAAGLAPPGHAAAFGGPP---GGLLLDALPG-PYAAAAAGPLGA 525
AG G A A G P G D LPG P G GA
Sbjct: 448 AGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGA 492
Score = 31.2 bits (69), Expect = 2.8
Identities = 35/137 (25%), Positives = 46/137 (33%), Gaps = 22/137 (16%)
Query: 420 LEGRQVVPPPPPAPRPGPVLGAPGELALAGAAA-----AYPGKGAAPYA--PPAPSRSAL 472
LE +V PP P ++G PG G PG+ P + P P ++L
Sbjct: 305 LEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSL 364
Query: 473 AHPISLMTLPGEAGAAGLAPPGHA--------AAFGGPPGGLLLDALPGPYA-------A 517
P + G+ G A A A GPPG + PGP
Sbjct: 365 MLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLK 424
Query: 518 AAAGPLGAAPDRFPADL 534
+G LG R P L
Sbjct: 425 GESGDLGPQGPRGPQGL 441
Score = 31.2 bits (69), Expect = 2.8
Identities = 41/129 (31%), Positives = 47/129 (36%), Gaps = 27/129 (20%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPG-KGAAPY----APPAPSR 469
P RGL G Q P P P+ P G PG+ L G +PG +G + PP P
Sbjct: 787 PGERGLPGPQG-PNGFPGPKGPP--GPPGKDGLPG----HPGQRGEVGFQGKTGPPGPPG 839
Query: 470 SALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAA----GPLGA 525
+ G GAAG P GPPG LPG GP GA
Sbjct: 840 -----------VVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGA 888
Query: 526 APDRFPADL 534
PA L
Sbjct: 889 PGKDGPAGL 897
Score = 30.8 bits (68), Expect = 3.6
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 140 GASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRAPSSSFVLRGSPAP 199
G G G G R GLPG + GL + G PPGV + P S +G P P
Sbjct: 503 GERGDDGEIGPR-GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGP 561
Query: 200 RADGG 204
G
Sbjct: 562 PGQQG 566
Score = 30.0 bits (66), Expect = 6.2
Identities = 38/135 (28%), Positives = 43/135 (31%), Gaps = 43/135 (31%)
Query: 417 ARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAA----PYAPPAPSRSAL 472
ARGL G+ P GP G G+ GA KG + P+ PP
Sbjct: 741 ARGLSGKS-----GPRGERGPT-GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERG--- 791
Query: 473 AHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPG----------------PYA 516
LPG G G P GPPG D LPG P
Sbjct: 792 --------LPGPQGPNGFPGPK------GPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGP 837
Query: 517 AAAAGPLGAAPDRFP 531
GP GAA + P
Sbjct: 838 PGVVGPQGAAGETGP 852
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 50.8 bits (120), Expect = 3e-06
Identities = 43/118 (36%), Positives = 49/118 (41%), Gaps = 25/118 (21%)
Query: 415 PTARGLEGRQVVPPPPPAP---RPGPVLGAPGELALAGAAAAYPGKG-AAPYAPPAPSRS 470
P G EG + P PP AP P + G PGE L G A KG P PP P+ S
Sbjct: 850 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGS 909
Query: 471 ALAHPISLMTLPGEAGAAG----LAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLG 524
PGE GAAG + PPG GPPG +PG GP+G
Sbjct: 910 -----------PGERGAAGSGGPIGPPGRPGP-QGPPGAAGEKGVPG-----EKGPIG 950
Score = 45.8 bits (107), Expect = 1e-04
Identities = 42/127 (33%), Positives = 50/127 (39%), Gaps = 24/127 (18%)
Query: 415 PTAR-GLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALA 473
PT R G++G +P P P G GE+ G KG + PP P
Sbjct: 951 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGE--HGPPGPPG---- 1004
Query: 474 HPISLMTLPGEAGAAG----LAPPGHAAA--------FGGPPGGLLLDALPGPYA----A 517
PI + PG AGA G P GH A F GPPG + L LPGP
Sbjct: 1005 -PIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGET 1063
Query: 518 AAAGPLG 524
GP+G
Sbjct: 1064 GDVGPMG 1070
Score = 40.0 bits (92), Expect = 0.006
Identities = 38/94 (40%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 435 PGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGLA-PP 493
PGP G PGE L G A KG P P AP + P L PGE G G A P
Sbjct: 838 PGPP-GPPGEQGLPGTAGKEGTKGD-PGPPGAPGKDG---PAGLRGFPGERGLPGTAGGP 892
Query: 494 GHAAAFG--GPPGGLLLDALPGPY-AAAAAGPLG 524
G G GPPG PG AA + GP+G
Sbjct: 893 GLKGNEGPSGPPGPA---GSPGERGAAGSGGPIG 923
Score = 39.3 bits (90), Expect = 0.010
Identities = 46/143 (32%), Positives = 55/143 (38%), Gaps = 43/143 (30%)
Query: 415 PTARGLEGRQ-VVPPPPPAPRPGP--VLGAPGELALAGAAAAYPGKGA-APYAPP----- 465
P A G G+ V P PA +PGP + G PG + G A G P PP
Sbjct: 1234 PGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGL 1293
Query: 466 ---APSRSALAHP--ISLMTLPGEAGAAG----------------LAPPGHAAAF--GGP 502
A ++ HP I L+ PGE G G + PG + GGP
Sbjct: 1294 RGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGP 1353
Query: 503 PGGLLLDALPGPYAAAAAGPLGA 525
PG LPGP AGP GA
Sbjct: 1354 PG------LPGP-----AGPKGA 1365
Score = 38.9 bits (89), Expect = 0.013
Identities = 39/118 (33%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 417 ARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAA------YPGKGAA--PYAPPAPS 468
A+G G P P +P P G PG L G A + GKGA P A AP
Sbjct: 1182 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1241
Query: 469 RSALAHPISLMTLPGEAGAAGL----APPGHAAAFG--GPPGGLLLDALPGPYAAAAA 520
++ P PG G GL G A G GPPG + LPG A A
Sbjct: 1242 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGA 1299
Score = 34.7 bits (78), Expect = 0.25
Identities = 35/112 (31%), Positives = 41/112 (36%), Gaps = 20/112 (17%)
Query: 415 PTARGLEGRQVVPPPPPAPRP-GPV-----LGAPGELALAGAAAAYPGKGA-------AP 461
P +G +G + PP P P GPV GA GE G + KG P
Sbjct: 985 PGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGP 1044
Query: 462 YAP------PAPS-RSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGL 506
P P PS + M PG G G A P A GPPGG+
Sbjct: 1045 PGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGV 1096
Score = 32.3 bits (72), Expect = 1.3
Identities = 27/85 (31%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 440 GAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAF 499
G PGE G A P P I LPGE+G GL P
Sbjct: 458 GLPGEKGHRGDTGAQ----GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGI 513
Query: 500 GGPPGGLLLDALPGPYAAAAAGPLG 524
GPPG +D GP + GP G
Sbjct: 514 PGPPGVRGMDGPQGP--KGSLGPQG 536
Score = 32.0 bits (71), Expect = 1.6
Identities = 35/105 (33%), Positives = 37/105 (35%), Gaps = 23/105 (21%)
Query: 430 PPAP-----RPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGE 484
PP P RPGP LG PG L G + P P P L PG+
Sbjct: 381 PPGPMGYTGRPGP-LGQPGSPGLKGESG-----DLGPQGPRGPQ--------GLTGPPGK 426
Query: 485 AGAAGLAPPGHAAAFGGPP---GGLLLDALPG-PYAAAAAGPLGA 525
AG G A A G P G D LPG P G GA
Sbjct: 427 AGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGA 471
Score = 31.2 bits (69), Expect = 2.8
Identities = 35/137 (25%), Positives = 46/137 (33%), Gaps = 22/137 (16%)
Query: 420 LEGRQVVPPPPPAPRPGPVLGAPGELALAGAAA-----AYPGKGAAPYA--PPAPSRSAL 472
LE +V PP P ++G PG G PG+ P + P P ++L
Sbjct: 284 LEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSL 343
Query: 473 AHPISLMTLPGEAGAAGLAPPGHA--------AAFGGPPGGLLLDALPGPYA-------A 517
P + G+ G A A A GPPG + PGP
Sbjct: 344 MLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLK 403
Query: 518 AAAGPLGAAPDRFPADL 534
+G LG R P L
Sbjct: 404 GESGDLGPQGPRGPQGL 420
Score = 31.2 bits (69), Expect = 2.8
Identities = 41/129 (31%), Positives = 47/129 (36%), Gaps = 27/129 (20%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPG-KGAAPY----APPAPSR 469
P RGL G Q P P P+ P G PG+ L G +PG +G + PP P
Sbjct: 766 PGERGLPGPQG-PNGFPGPKGPP--GPPGKDGLPG----HPGQRGEVGFQGKTGPPGPPG 818
Query: 470 SALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAA----GPLGA 525
+ G GAAG P GPPG LPG GP GA
Sbjct: 819 -----------VVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGA 867
Query: 526 APDRFPADL 534
PA L
Sbjct: 868 PGKDGPAGL 876
Score = 30.8 bits (68), Expect = 3.6
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 140 GASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRAPSSSFVLRGSPAP 199
G G G G R GLPG + GL + G PPGV + P S +G P P
Sbjct: 482 GERGDDGEIGPR-GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGP 540
Query: 200 RADGG 204
G
Sbjct: 541 PGQQG 545
Score = 30.0 bits (66), Expect = 6.2
Identities = 38/135 (28%), Positives = 43/135 (31%), Gaps = 43/135 (31%)
Query: 417 ARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAA----PYAPPAPSRSAL 472
ARGL G+ P GP G G+ GA KG + P+ PP
Sbjct: 720 ARGLSGKS-----GPRGERGPT-GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERG--- 770
Query: 473 AHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPG----------------PYA 516
LPG G G P GPPG D LPG P
Sbjct: 771 --------LPGPQGPNGFPGPK------GPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGP 816
Query: 517 AAAAGPLGAAPDRFP 531
GP GAA + P
Sbjct: 817 PGVVGPQGAAGETGP 831
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 50.8 bits (120), Expect = 3e-06
Identities = 43/118 (36%), Positives = 49/118 (41%), Gaps = 25/118 (21%)
Query: 415 PTARGLEGRQVVPPPPPAP---RPGPVLGAPGELALAGAAAAYPGKG-AAPYAPPAPSRS 470
P G EG + P PP AP P + G PGE L G A KG P PP P+ S
Sbjct: 957 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGS 1016
Query: 471 ALAHPISLMTLPGEAGAAG----LAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLG 524
PGE GAAG + PPG GPPG +PG GP+G
Sbjct: 1017 -----------PGERGAAGSGGPIGPPGRPGP-QGPPGAAGEKGVPG-----EKGPIG 1057
Score = 45.8 bits (107), Expect = 1e-04
Identities = 42/127 (33%), Positives = 50/127 (39%), Gaps = 24/127 (18%)
Query: 415 PTAR-GLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALA 473
PT R G++G +P P P G GE+ G KG + PP P
Sbjct: 1058 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGE--HGPPGPPG---- 1111
Query: 474 HPISLMTLPGEAGAAG----LAPPGHAAA--------FGGPPGGLLLDALPGPYA----A 517
PI + PG AGA G P GH A F GPPG + L LPGP
Sbjct: 1112 -PIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGET 1170
Query: 518 AAAGPLG 524
GP+G
Sbjct: 1171 GDVGPMG 1177
Score = 40.0 bits (92), Expect = 0.006
Identities = 38/94 (40%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 435 PGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGLA-PP 493
PGP G PGE L G A KG P P AP + P L PGE G G A P
Sbjct: 945 PGPP-GPPGEQGLPGTAGKEGTKGD-PGPPGAPGKDG---PAGLRGFPGERGLPGTAGGP 999
Query: 494 GHAAAFG--GPPGGLLLDALPGPY-AAAAAGPLG 524
G G GPPG PG AA + GP+G
Sbjct: 1000 GLKGNEGPSGPPGPA---GSPGERGAAGSGGPIG 1030
Score = 39.3 bits (90), Expect = 0.010
Identities = 46/143 (32%), Positives = 55/143 (38%), Gaps = 43/143 (30%)
Query: 415 PTARGLEGRQ-VVPPPPPAPRPGP--VLGAPGELALAGAAAAYPGKGA-APYAPP----- 465
P A G G+ V P PA +PGP + G PG + G A G P PP
Sbjct: 1341 PGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGL 1400
Query: 466 ---APSRSALAHP--ISLMTLPGEAGAAG----------------LAPPGHAAAF--GGP 502
A ++ HP I L+ PGE G G + PG + GGP
Sbjct: 1401 RGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGP 1460
Query: 503 PGGLLLDALPGPYAAAAAGPLGA 525
PG LPGP AGP GA
Sbjct: 1461 PG------LPGP-----AGPKGA 1472
Score = 38.9 bits (89), Expect = 0.013
Identities = 39/118 (33%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 417 ARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAA------YPGKGAA--PYAPPAPS 468
A+G G P P +P P G PG L G A + GKGA P A AP
Sbjct: 1289 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1348
Query: 469 RSALAHPISLMTLPGEAGAAGL----APPGHAAAFG--GPPGGLLLDALPGPYAAAAA 520
++ P PG G GL G A G GPPG + LPG A A
Sbjct: 1349 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGA 1406
Score = 34.7 bits (78), Expect = 0.25
Identities = 35/112 (31%), Positives = 41/112 (36%), Gaps = 20/112 (17%)
Query: 415 PTARGLEGRQVVPPPPPAPRP-GPV-----LGAPGELALAGAAAAYPGKGA-------AP 461
P +G +G + PP P P GPV GA GE G + KG P
Sbjct: 1092 PGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGP 1151
Query: 462 YAP------PAPS-RSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGL 506
P P PS + M PG G G A P A GPPGG+
Sbjct: 1152 PGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGV 1203
Score = 32.3 bits (72), Expect = 1.3
Identities = 27/85 (31%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 440 GAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAF 499
G PGE G A P P I LPGE+G GL P
Sbjct: 565 GLPGEKGHRGDTGAQ----GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGI 620
Query: 500 GGPPGGLLLDALPGPYAAAAAGPLG 524
GPPG +D GP + GP G
Sbjct: 621 PGPPGVRGMDGPQGP--KGSLGPQG 643
Score = 32.0 bits (71), Expect = 1.6
Identities = 35/105 (33%), Positives = 37/105 (35%), Gaps = 23/105 (21%)
Query: 430 PPAP-----RPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGE 484
PP P RPGP LG PG L G + P P P L PG+
Sbjct: 488 PPGPMGYTGRPGP-LGQPGSPGLKGESG-----DLGPQGPRGPQ--------GLTGPPGK 533
Query: 485 AGAAGLAPPGHAAAFGGPP---GGLLLDALPG-PYAAAAAGPLGA 525
AG G A A G P G D LPG P G GA
Sbjct: 534 AGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGA 578
Score = 31.2 bits (69), Expect = 2.8
Identities = 35/137 (25%), Positives = 46/137 (33%), Gaps = 22/137 (16%)
Query: 420 LEGRQVVPPPPPAPRPGPVLGAPGELALAGAAA-----AYPGKGAAPYA--PPAPSRSAL 472
LE +V PP P ++G PG G PG+ P + P P ++L
Sbjct: 391 LEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSL 450
Query: 473 AHPISLMTLPGEAGAAGLAPPGHA--------AAFGGPPGGLLLDALPGPYA-------A 517
P + G+ G A A A GPPG + PGP
Sbjct: 451 MLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLK 510
Query: 518 AAAGPLGAAPDRFPADL 534
+G LG R P L
Sbjct: 511 GESGDLGPQGPRGPQGL 527
Score = 31.2 bits (69), Expect = 2.8
Identities = 41/129 (31%), Positives = 47/129 (36%), Gaps = 27/129 (20%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPG-KGAAPY----APPAPSR 469
P RGL G Q P P P+ P G PG+ L G +PG +G + PP P
Sbjct: 873 PGERGLPGPQG-PNGFPGPKGPP--GPPGKDGLPG----HPGQRGEVGFQGKTGPPGPPG 925
Query: 470 SALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAA----GPLGA 525
+ G GAAG P GPPG LPG GP GA
Sbjct: 926 -----------VVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGA 974
Query: 526 APDRFPADL 534
PA L
Sbjct: 975 PGKDGPAGL 983
Score = 30.8 bits (68), Expect = 3.6
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 140 GASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRAPSSSFVLRGSPAP 199
G G G G R GLPG + GL + G PPGV + P S +G P P
Sbjct: 589 GERGDDGEIGPR-GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGP 647
Query: 200 RADGG 204
G
Sbjct: 648 PGQQG 652
Score = 30.0 bits (66), Expect = 6.2
Identities = 38/135 (28%), Positives = 43/135 (31%), Gaps = 43/135 (31%)
Query: 417 ARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAA----PYAPPAPSRSAL 472
ARGL G+ P GP G G+ GA KG + P+ PP
Sbjct: 827 ARGLSGKS-----GPRGERGPT-GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERG--- 877
Query: 473 AHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPG----------------PYA 516
LPG G G P GPPG D LPG P
Sbjct: 878 --------LPGPQGPNGFPGPK------GPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGP 923
Query: 517 AAAAGPLGAAPDRFP 531
GP GAA + P
Sbjct: 924 PGVVGPQGAAGETGP 938
>gi|22779860 forkhead box L1 [Homo sapiens]
Length = 345
Score = 50.8 bits (120), Expect = 3e-06
Identities = 62/245 (25%), Positives = 95/245 (38%), Gaps = 37/245 (15%)
Query: 54 GPERRATAPAMAPAPPLGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQ 113
GPER A APA L A +A++ ++ + SY LI AI+ AP++R+TL+
Sbjct: 22 GPERPGLPLAFAPAAALAAS----GRAETPQKPPY---SYIALIAMAIQDAPEQRVTLNG 74
Query: 114 IYDWMVRYVPYFKDKGDS-NSSAGWKVGASGWGGGWGRRLGLPGAA-------RCVGLQE 165
IY +++ P++ D +S + + R G PG RC+ + E
Sbjct: 75 IYQFIMDRFPFYHDNRQGWQNSIRHNLSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFE 134
Query: 166 G----RQKEGFLAPPGVTESCSSRAPSSSFVLRGSPAPRADGGGEVTFPEVATCEVVDLG 221
R+K PG E+ RA + P + GG + P ++ + G
Sbjct: 135 NGNYRRRKRKPKPGPGAPEAKRPRAETHQRSAEAQPEAGSGAGG--SGPAISRLQAAPAG 192
Query: 222 IGPQARAFSVP--------------LGASLQG-WGTAAGPSPELGSGQGWLPFYPFSTAD 266
P S P G + QG A G + G G G P P S +
Sbjct: 193 PSPLLDGPSPPAPLHWPGTASPNEDAGDAAQGAAAVAVGQAARTGDGPG-SPLRPASRSS 251
Query: 267 PSAED 271
P + D
Sbjct: 252 PKSSD 256
Score = 31.6 bits (70), Expect = 2.1
Identities = 37/126 (29%), Positives = 46/126 (36%), Gaps = 26/126 (20%)
Query: 428 PPPPAPRPGPVLGAP----GELALAGAAAAY---------PGKGAAPYAPPAPSRSALAH 474
P PPAP P +P G+ A AA A PG P + +P S +
Sbjct: 200 PSPPAPLHWPGTASPNEDAGDAAQGAAAVAVGQAARTGDGPGSPLRPASRSSPKSSDKSK 259
Query: 475 PISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPD---RFP 531
S+ ++ AG G PP GG A PGP A L A+ F
Sbjct: 260 SFSIDSI--LAGKQGQKPPSGDELLGG--------AKPGPGGRLGASLLAASSSLRPPFN 309
Query: 532 ADLDLD 537
A L LD
Sbjct: 310 ASLMLD 315
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 50.4 bits (119), Expect = 4e-06
Identities = 43/108 (39%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 425 VVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGE 484
++P P PA PG V+ P GAAA AP AP P+ A A P + P
Sbjct: 225 LLPLPKPA-APGTVIQTP---PFVGAAAP-----PAPAAPSPPAAPAPAAPAAAPPPPPP 275
Query: 485 AGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFPA 532
A A PPGH A GPP A+P P AA G GAAP PA
Sbjct: 276 APATLARPPGHPA---GPP--TAAPAVPPPAAAQNGGSAGAAPAPAPA 318
Score = 44.3 bits (103), Expect = 3e-04
Identities = 41/123 (33%), Positives = 47/123 (38%), Gaps = 10/123 (8%)
Query: 414 APTARGLEGRQVVPPPP-PAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSR--- 469
AP A P P PA P P AP LA A P A PPA ++
Sbjct: 248 APPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGG 307
Query: 470 SALAHPISLMTLPGEAGAAGLAPPGHAAAFGGP------PGGLLLDALPGPYAAAAAGPL 523
SA A P G AG +G PG AAA P P ++ A P AA+GP
Sbjct: 308 SAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPA 367
Query: 524 GAA 526
A
Sbjct: 368 STA 370
Score = 40.0 bits (92), Expect = 0.006
Identities = 43/114 (37%), Positives = 46/114 (40%), Gaps = 15/114 (13%)
Query: 425 VVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGE 484
V P PAP GP A G ALA A A PG G P P P A P + TL G
Sbjct: 146 VAAGPEPAPA-GPAKPA-GPAALA--ARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGS 201
Query: 485 AGAAG---LAPPGHAAAFGGPPGGLLL--DALPG------PYAAAAAGPLGAAP 527
A A P + GP L L A PG P+ AAA P AAP
Sbjct: 202 AALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAP 255
Score = 38.9 bits (89), Expect = 0.013
Identities = 46/141 (32%), Positives = 54/141 (38%), Gaps = 22/141 (15%)
Query: 400 VNGDFATHCGDFEKAPTARGLEGRQVVPPPPPAPRPG--------------PVLGAPGEL 445
V+G A G AP A G G PPP RPG P++ P
Sbjct: 63 VSGSPAGAAGAGPAAP-AEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLV--PAGP 119
Query: 446 ALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGG 505
A A P +G+A P P+ +A+A P AG A A P AA GP G
Sbjct: 120 APPAAKLRPPPEGSAGSCAPVPAAAAVAAGPE----PAPAGPAKPAGPAALAARAGPGPG 175
Query: 506 LLLDALPGPYAAAAAGPLGAA 526
PGP AGP GAA
Sbjct: 176 PGPGPGPGPGPGKPAGP-GAA 195
Score = 33.5 bits (75), Expect = 0.56
Identities = 35/115 (30%), Positives = 40/115 (34%), Gaps = 19/115 (16%)
Query: 426 VPPPPPA---------PRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPI 476
VPPP A P P P G P + PG GAA A PAP A +
Sbjct: 297 VPPPAAAQNGGSAGAAPAPAPAAGGP------AGVSGQPGPGAAA-AAPAPGVKAESPKR 349
Query: 477 SLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFP 531
+ P A + P AA G + ALP P AA P P P
Sbjct: 350 VVQAAPPAAQTLAASGPASTAA-SMVIGPTMQGALPSP--AAVPPPAPGTPTGLP 401
Score = 30.0 bits (66), Expect = 6.2
Identities = 32/88 (36%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 443 GELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGE-AGAAGLAPPGHAAAFGG 501
G L AA+A AP P R+A A + + G AGAAG P AA G
Sbjct: 27 GSLESQLAASAAHHHHLAPRTPEV--RAAAAGALGNHVVSGSPAGAAGAGP---AAPAEG 81
Query: 502 PPGGLLLDALPGPYAAAAAGPLGAAPDR 529
PG A P P A A P G P R
Sbjct: 82 APG-----AAPEPPPAGRARPGGGGPQR 104
>gi|50345831 forkhead box J3 [Homo sapiens]
Length = 622
Score = 50.1 bits (118), Expect = 6e-06
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Query: 92 SYADLITKAIESAPDKRLTLSQIYDWMVRYVPYFKDKGDSNSSAGWK 138
SYA LIT AI S+P K++TLS+IY W+ PY+++ G +GWK
Sbjct: 82 SYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAG-----SGWK 123
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 49.3 bits (116), Expect = 1e-05
Identities = 52/176 (29%), Positives = 61/176 (34%), Gaps = 39/176 (22%)
Query: 415 PTARGLEGRQVVP--PPPPAPRPGPVL-GAPGELALAGAAAA--YPGKGAAPYAPPAPS- 468
P G++G P P PP P+ P G PGE L G G+ P AP
Sbjct: 43 PGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGE 102
Query: 469 RSALAHP----ISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLG 524
R +L P + LPG G AG++ P GPPG L LPGP GP G
Sbjct: 103 RGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGP-----PGPPG 157
Query: 525 AAPDRFPADLDLDMFSGSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAP 580
P P + D S PP PPG G P
Sbjct: 158 --PPGHPG----------------------VLPEGATDLQCPSICPPGPPGPPGMP 189
Score = 39.3 bits (90), Expect = 0.010
Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 414 APTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALA 473
AP RG +G++ P P P + G G+ GAA +G A + P
Sbjct: 398 APGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAG-SDGLPGDKGEL 456
Query: 474 HPISLMTLPGEAGAAG-LAPPGHAAAFG--------GPPGGLLLDALPG 513
P L+ GE+G+ G L P G G GPPG L L +PG
Sbjct: 457 GPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPG 505
Score = 31.6 bits (70), Expect = 2.1
Identities = 48/168 (28%), Positives = 54/168 (32%), Gaps = 49/168 (29%)
Query: 430 PPAPRPGPVLGAPGELALAGAA--AAYPGKGAAPYAPPAPSRSAL---AHPISLMTLPGE 484
P A P +L GEL A A PG P P P + + A P L PG
Sbjct: 4 PRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGP 63
Query: 485 AGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFPADLDLDMFSGSLE 544
GA G A G PG L GP GP GA +R GSL
Sbjct: 64 KGAPGKPGKPGEAGLPGLPGVDGLTGRDGP-----PGPKGAPGER-----------GSLG 107
Query: 545 CDVESIILNDFMDSDEMDFNFDSALPPPPPGLAG---APPPNQSWVPG 589
PP PPGL G PP ++ V G
Sbjct: 108 -------------------------PPGPPGLGGKGLPGPPGEAGVSG 130
>gi|8923842 forkhead box J2 [Homo sapiens]
Length = 574
Score = 49.3 bits (116), Expect = 1e-05
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 92 SYADLITKAIESAPDKRLTLSQIYDWMVRYVPYFKDKGDSNSSAGWK 138
SYA LIT AI S+P K++TLS+IY W+ PY+K N+ GWK
Sbjct: 70 SYATLITYAINSSPAKKMTLSEIYRWICDNFPYYK-----NAGIGWK 111
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 48.1 bits (113), Expect = 2e-05
Identities = 42/128 (32%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 415 PTARGLEGRQVVPPPPPAPRP--GPVLGAPGELALAGAAAAYPGKGAA------------ 460
P + + +Q+ PPPP A P G VL AP ++ + A PG GA
Sbjct: 9 PPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGGEGLGAAAAALL 68
Query: 461 --PYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPG--HAAAFGGPPGGLLLDALPGPYA 516
P PP P+ +A P P A A PP AA GP GG AL +
Sbjct: 69 LHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPALVAGSS 128
Query: 517 AAAAGPLG 524
AAA P G
Sbjct: 129 AAAPFPHG 136
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 48.1 bits (113), Expect = 2e-05
Identities = 51/168 (30%), Positives = 58/168 (34%), Gaps = 32/168 (19%)
Query: 427 PPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAP----YAPP--APSRSALAHPISLMT 480
PPPPP P PG P +L G + G P APP R +L HP
Sbjct: 258 PPPPPPPLPGLATSPPFQLTKPGLWSTLHGDAWGPERKGSAPPERQEQRHSLPHP----- 312
Query: 481 LPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFPADLDLDMFS 540
P A A PPGH PPG PGP A G P P DL
Sbjct: 313 YPYPAPAYTAHPPGHRLVPAAPPG-------PGPRPPGAESH-GCLPATRPPGSDLR--- 361
Query: 541 GSLECDVESIILNDFMDSDEMDFNFDSAL---PPPPPGLAGAPPPNQS 585
ES + MDS + + P PPGL G + S
Sbjct: 362 -------ESRVQRSRMDSSVSPAATTACVPYAPSRPPGLPGTTTSSSS 402
Score = 37.0 bits (84), Expect = 0.051
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAH 474
P A+ Q PPPPP P P +L + + L G Y G GAA P P
Sbjct: 780 PLAKFPPPSQPQPPPPPPPSPASLLKSLASV-LEGQKYCYRGTGAAVSTRPGPL------ 832
Query: 475 PISLMTLPGEAGAAGLAPPGHAAAFGGPP 503
P + + +GA L P A + G P
Sbjct: 833 PTTQYSPGPPSGATALPPTSAAPSAQGSP 861
Score = 30.0 bits (66), Expect = 6.2
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 19/119 (15%)
Query: 423 RQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKG-AAPYAPPAPSRSA-LAHPISLMT 480
R + PPPPPA GP A E + +G P PP P R L P S +
Sbjct: 475 RLLRPPPPPAWLKGPACRAAREDGEILEELFFGTEGPPRPAPPPLPHREGFLGPPASRFS 534
Query: 481 LPGEAGAAGLAPP------------GHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAP 527
+ + PP H+++ GP + P PY A + PL P
Sbjct: 535 VGTQDSHTPPTPPTPTTSSSNSNSGSHSSSPAGP-----VSFPPPPYLARSIDPLPRPP 588
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 48.1 bits (113), Expect = 2e-05
Identities = 44/144 (30%), Positives = 55/144 (38%), Gaps = 36/144 (25%)
Query: 423 RQVVPPPPPAPRPGPVLGAPGELALAGAAAAY-----------------------PGKGA 459
RQ +PPP P P P P L G A AG A+ P G
Sbjct: 225 RQPLPPPHPHPHPHPELLLRGGAAAAGDPGAFLPGFAAYGAYGYGYGLALPAYGAPPPGP 284
Query: 460 APYAPPAP-----SRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGP 514
AP+ P P + +A A P L PG A A PP A+ F G + P P
Sbjct: 285 APHPHPHPHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPP-TASVFAG------AGSAPAP 337
Query: 515 YAAAAAGPLGAAPDRFPADLDLDM 538
A+ +GP G P PA L ++
Sbjct: 338 APASGSGP-GPGPAGLPAFLGAEL 360
Score = 46.2 bits (108), Expect = 8e-05
Identities = 92/365 (25%), Positives = 122/365 (33%), Gaps = 99/365 (27%)
Query: 31 QPDLAGDED-------------GALGAGVAEGAEDCGPERRATAPAMAPAPPLG--AEVG 75
+ DLA DE+ + GA A G+ G A P PP G A
Sbjct: 64 EADLAEDEEESGGCSDGEPRALASRGAAAAAGSPGPGAAAARGAAGPGPGPPSGGAATRS 123
Query: 76 PLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVRYVPYFKDKGDS-NSS 134
PL K SY LIT AI +P KRLTLS+I +++ PY+++K + +S
Sbjct: 124 PLVKPP---------YSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNS 174
Query: 135 AGWKVGASGWGGGWGRRLGLPGAARCVGLQEG-----------RQKEGFLAPPGVTESCS 183
+ + R G PG L R+++ F P +
Sbjct: 175 IRHNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGSFLRRRKRFKRQP-LPPPHP 233
Query: 184 SRAPSSSFVLRGSPAPRADGGGEVTFPEVATCEVVDLGIG-------------------- 223
P +LRG A D G P A G G
Sbjct: 234 HPHPHPELLLRGGAAAAGDPG--AFLPGFAAYGAYGYGYGLALPAYGAPPPGPAPHPHPH 291
Query: 224 PQARAF-----------SVPLGAS------------LQGWGTAAGPSPELGSGQGWLPFY 260
P A AF SVP G + G G+A P+P GSG G P
Sbjct: 292 PHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGAGSAPAPAPASGSGPGPGP-- 349
Query: 261 PFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTPDGRANGLPRA-LNQGLQRTR 319
A P + C + + +L+ G A GLP A L QGL+
Sbjct: 350 --------------AGLPAFLGAELGCAKAFYAASLSPPAAGTAAGLPTALLRQGLKTDA 395
Query: 320 QGKAG 324
G AG
Sbjct: 396 GGGAG 400
Score = 42.7 bits (99), Expect = 0.001
Identities = 48/131 (36%), Positives = 50/131 (38%), Gaps = 23/131 (17%)
Query: 415 PTARGLEGRQVVPPPPPA----PRPGPVLGAPGEL-ALAGAAAAY-------PGKGAAPY 462
PTA G P P PA P PGP G P L A G A A+ P G A
Sbjct: 323 PTASVFAGAGSAPAPAPASGSGPGPGPA-GLPAFLGAELGCAKAFYAASLSPPAAGTAAG 381
Query: 463 APPAPSRSALAHPISLMTLPGEAGAAGLAPP-------GHAAAFGGPPGGLLLDALPGPY 515
P A R L G AG AG P GH PPG + PGP
Sbjct: 382 LPTALLRQGLKTDAGGGAGGGGAG-AGQRPSFSIDHIMGHGGGGAAPPGA--GEGSPGPP 438
Query: 516 AAAAAGPLGAA 526
AAAAGP G A
Sbjct: 439 FAAAAGPGGQA 449
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 47.4 bits (111), Expect = 4e-05
Identities = 45/120 (37%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 418 RGLEGRQVVPPPP--PAPRPGPVL--GAPGELALAGAAAAYPGKGAAPYAP--PAPSRSA 471
RG +G P PP PA P P L GA G+ GA PG P P P P +
Sbjct: 334 RGPKGEAGDPGPPGLPAYSPHPSLAKGARGDPGFPGAQGE-PGSQGEPGDPGLPGPPGLS 392
Query: 472 LAHPISLMTLPGEAGAAG-LAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRF 530
+ LPGE G G + PG A +GGPPG PGP GP G PD F
Sbjct: 393 IGDGDQRRGLPGEMGPKGFIGDPGIPALYGGPPGPDGKRGPPGP--PGLPGPPG--PDGF 448
Score = 40.8 bits (94), Expect = 0.004
Identities = 38/120 (31%), Positives = 47/120 (39%), Gaps = 24/120 (20%)
Query: 428 PPPPAPR---------PGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISL 478
P PP R PGPV G PG+ GA PG+ P +P + P ++
Sbjct: 1222 PGPPGERGDPGEANTLPGPV-GVPGQKGDQGA----PGERGPPGSPGLQGFPGITPPSNI 1276
Query: 479 MTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPG-------PYAAAAAGPLGAAPDRFP 531
PG+ GA G+ + GPPG ALPG P A G G A D P
Sbjct: 1277 SGAPGDKGAPGIF---GLKGYRGPPGPPGSAALPGSKGDTGNPGAPGTPGTKGWAGDSGP 1333
Score = 35.0 bits (79), Expect = 0.19
Identities = 43/142 (30%), Positives = 50/142 (35%), Gaps = 36/142 (25%)
Query: 418 RGLEGRQVVPPPPPAPRPGPVLGAPGEL--------ALAG--AAAAYPGKGAAPYAPPAP 467
RG G +P PP P G PG++ A+ G A PG P P
Sbjct: 632 RGFPGDAGLPGPPGFLGPPGPAGTPGQIDCDTDVKRAVGGDRQEAIQPGCIGGPKGLP-- 689
Query: 468 SRSALAHPISLMTLPGEAGAAGL-APPGHAAAFGGP-----PGGLLLDALPGPYAAAAAG 521
L PG GA GL PG A A GGP PG + PGP G
Sbjct: 690 ---------GLPGPPGPTGAKGLRGIPGFAGADGGPGPRGLPGDAGREGFPGP--PGFIG 738
Query: 522 PLGA-------APDRFPADLDL 536
P G+ PD P + L
Sbjct: 739 PRGSKGAVGLPGPDGSPGPIGL 760
Score = 33.9 bits (76), Expect = 0.43
Identities = 43/132 (32%), Positives = 48/132 (36%), Gaps = 25/132 (18%)
Query: 414 APTARGLEGRQVVPPPPPAPR--PGPVLGA-PGELALAGAAAAYPGKGAAPYAPPAPSRS 470
+P GL G P PP R PG VLGA PG AG KG P R
Sbjct: 754 SPGPIGLPG----PDGPPGERGLPGEVLGAQPGPRGDAGVPGQPGLKGLPGDRGPPGFRG 809
Query: 471 ALAHP-----ISLMTLPGEAGAAGLAPPGHAAAFGGPP---GGLLLDALPG--------- 513
+ P LPG +G GL P F G P G L L +PG
Sbjct: 810 SQGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGIPGREGLPGDRG 869
Query: 514 -PYAAAAAGPLG 524
P A GP+G
Sbjct: 870 DPGDTGAPGPVG 881
Score = 33.5 bits (75), Expect = 0.56
Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 128 KGDS-NSSAGWKVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRA 186
KGD+ N A G GW G G + G PG G + R ++GF+ G T + R
Sbjct: 1310 KGDTGNPGAPGTPGTKGWAGDSGPQ-GRPGVFGLPGEKGPRGEQGFMGNTGPTGAVGDRG 1368
Query: 187 PSSSFVLRGSPA-PRADGGGEVTFPEVA----TCEVVDLGIGPQAR 227
P +G P P A G V P +A V +GPQ R
Sbjct: 1369 PKGP---KGDPGFPGAP--GTVGAPGIAGIPQKIAVQPGTVGPQGR 1409
Score = 31.6 bits (70), Expect = 2.1
Identities = 36/125 (28%), Positives = 45/125 (36%), Gaps = 16/125 (12%)
Query: 419 GLEGRQVVPPPPPAP-RPGP------VLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSA 471
G +G++ P PP P PGP + GA G G + +G + A
Sbjct: 426 GPDGKRGPPGPPGLPGPPGPDGFLFGLKGAKGRAGFPGLPGSPGARGPKGWKGDAGECRC 485
Query: 472 LAHPISLMTLPGEAGAAGLA----PPGHAAAFGGPPGGLLLDALPG----PYAAAAAGPL 523
++ LPG G G A PG G PG L PG P A GP
Sbjct: 486 TEGDEAIKGLPGLPGPKGFAGINGEPGRKGD-RGDPGQHGLPGFPGLKGVPGNIGAPGPK 544
Query: 524 GAAPD 528
GA D
Sbjct: 545 GAKGD 549
Score = 31.2 bits (69), Expect = 2.8
Identities = 33/122 (27%), Positives = 38/122 (31%), Gaps = 11/122 (9%)
Query: 414 APTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAG--------AAAAYPGKGAAPYAPP 465
A R EG + + P P P G GE G +PG P
Sbjct: 480 AGECRCTEGDEAIKGLPGLPGPKGFAGINGEPGRKGDRGDPGQHGLPGFPGLKGVPGNIG 539
Query: 466 APSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLD---ALPGPYAAAAAGP 522
AP +T GE G G+ G PG LD LPGP GP
Sbjct: 540 APGPKGAKGDSRTITTKGERGQPGVPGVPGMKGDDGSPGRDGLDGFPGLPGPPGDGIKGP 599
Query: 523 LG 524
G
Sbjct: 600 PG 601
Score = 30.0 bits (66), Expect = 6.2
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 412 EKAPTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGA--AAAYPGKGAAPYAPP-APS 468
+K G G Q PP AP G PGE GA A G+G P
Sbjct: 1395 QKIAVQPGTVGPQGRRGPPGAPGEMGPQGPPGEPGFRGAPGKAGPQGRGGVSAVPGFRGD 1454
Query: 469 RSALAH--PISLMTLPGEAGAAGL-APPGHAAAFG 500
+ H PI PG G+ GL PG + + G
Sbjct: 1455 EGPIGHQGPIGQEGAPGRPGSPGLPGMPGRSVSIG 1489
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 46.6 bits (109), Expect = 6e-05
Identities = 43/117 (36%), Positives = 45/117 (38%), Gaps = 22/117 (18%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAH 474
P G +GR P PP A V+G PG AG PGK P P A
Sbjct: 556 PGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGE----PGKAGERGVPGPPGAVGPAG 611
Query: 475 PISLMTLPGEAGAAGLAPPGHAAAFG-----GPPGGLLLDALPGPYAAAAAGPLGAA 526
GEAGA G PPG A G GP G LPGP AGP G A
Sbjct: 612 K------DGEAGAQG--PPGPAGPAGERGEQGPAGSPGFQGLPGP-----AGPPGEA 655
Score = 45.8 bits (107), Expect = 1e-04
Identities = 109/402 (27%), Positives = 134/402 (33%), Gaps = 93/402 (23%)
Query: 140 GASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRAPSSSFVLRGSPAP 199
G +G G G R G PG G R G PG + P+ RGSP P
Sbjct: 461 GPAGEEGKRGAR-GEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGE---RGSPGP 516
Query: 200 RADGG--GEVTFPEVATCEVVDLGIGPQARAFSVPLGASLQGWGTAAGPSPELG----SG 253
G GE P A +P L G + GP + G +G
Sbjct: 517 AGPKGSPGEAGRPGEA----------------GLPGAKGLTGSPGSPGPDGKTGPPGPAG 560
Query: 254 QGWLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTPDGRANGLPRALNQ 313
Q P P P A +G PG E P G P A+
Sbjct: 561 QDGRPGPP---GPPGARG---QAGVMGFPGPKGAAGEPGKAGERGVP-----GPPGAVGP 609
Query: 314 GLQRTRQGKAGKSQLLPSKARKCQRQGAWGPEESDQCLELGQYLDQEVEATRTGLAKAGS 373
+ G+AG +Q P A +G GP S L EA + G
Sbjct: 610 A---GKDGEAG-AQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPG 665
Query: 374 DMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATHCGDFEKAPTARGLEGRQVVPPPPPAP 433
D+G+ G +R ++ GE RG++G PP P P
Sbjct: 666 DLGAPGPSGARGERGFPGE-------------------------RGVQG----PPGPAGP 696
Query: 434 RPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGLAPP 493
R GAPG G A A PG AP + AP L +PGE GAAGL P
Sbjct: 697 RGAN--GAPGNDGAKGDAGA-PG---APGSQGAPG---------LQGMPGERGAAGLPGP 741
Query: 494 ----GHAAAFG--GPPGGLLLDALPGPYAAAAAGPLGAAPDR 529
G A G G PG + L GP GP GA D+
Sbjct: 742 KGDRGDAGPKGADGSPGKDGVRGLTGP--IGPPGPAGAPGDK 781
Score = 42.7 bits (99), Expect = 0.001
Identities = 44/116 (37%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 418 RGLEGRQVVPPPPPAPRPGPV--LGAPGELALAGAAAAYPGKGAAPYAPPAPSR-----S 470
RGL G + PP PA PG G G GA A PG P PP P+
Sbjct: 763 RGLTGP--IGPPGPAGAPGDKGESGPSGPAGPTGARGA-PGDRGEP-GPPGPAGFAGPPG 818
Query: 471 ALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAA-AAAGPLGA 525
A P PG+AGA G A P A GPPG + PG A +AGP GA
Sbjct: 819 ADGQP-GAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGA 873
Score = 40.0 bits (92), Expect = 0.006
Identities = 43/125 (34%), Positives = 45/125 (36%), Gaps = 19/125 (15%)
Query: 417 ARGLEGRQVVPPPP-PAPRPGPV-----LGAPGELALAGAAA-AYPGKGAAPYAPPAP-- 467
ARG G + P PP PA GP GA GE AGA A P A P PP P
Sbjct: 795 ARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIG 854
Query: 468 --------SRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAA 519
A P PG AG G P A GPPG + GP
Sbjct: 855 NVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGP--RGE 912
Query: 520 AGPLG 524
GP G
Sbjct: 913 TGPAG 917
Score = 38.1 bits (87), Expect = 0.023
Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 431 PAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGL 490
PA RPG V G PG AG + PG AP P +A ++ LPG+ G G
Sbjct: 915 PAGRPGEV-GPPGPPGPAGEKGS-PGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGF 972
Query: 491 AP------------PGHAAAFGGPPGGLLLDALPGP 514
P A+ GPPG + L GP
Sbjct: 973 PGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGP 1008
Score = 37.7 bits (86), Expect = 0.030
Identities = 37/118 (31%), Positives = 40/118 (33%), Gaps = 16/118 (13%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAY--------PGKGAAPYAPPA 466
P G G + +P PP AP P G PGE GA+ PGK
Sbjct: 178 PGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGK 237
Query: 467 PSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLG 524
P R P PG GA GL G G LD G A AGP G
Sbjct: 238 PGRPGERGP------PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGD--AGPAGPKG 287
Score = 37.7 bits (86), Expect = 0.030
Identities = 44/125 (35%), Positives = 49/125 (39%), Gaps = 13/125 (10%)
Query: 418 RGLEGRQVVP----PPPPAPRPGPV--LGAPGELALAGAAAAYPGKGAAPYAPPAPSRSA 471
RG EG Q V PP PA GP GA G+ GA A PG AP P A S
Sbjct: 361 RGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGA-PGIAGAPGFPGARGPSG 419
Query: 472 LAHPISLMTLPGEAGAAGLAPPGHAAAFG--GPPGGLLLDALPGPYAAAAAGPLGAAPDR 529
P G +G G PG G G PG + + PGP A G GA +
Sbjct: 420 PQGPGGPPGPKGNSGEPG--APGSKGDTGAKGEPGPVGVQGPPGP--AGEEGKRGARGEP 475
Query: 530 FPADL 534
P L
Sbjct: 476 GPTGL 480
Score = 37.7 bits (86), Expect = 0.030
Identities = 112/443 (25%), Positives = 138/443 (31%), Gaps = 84/443 (18%)
Query: 127 DKGDSNSSA-GWKVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSR 185
DKG+S S GA G G G G PG A GF PPG ++
Sbjct: 780 DKGESGPSGPAGPTGARGAPGDRGEP-GPPGPA------------GFAGPPGADGQPGAK 826
Query: 186 APSSSFVLRGSPAPRADGGGEVTFPEVATCEVVDLGI--GPQARAFSVPLGASLQGWGTA 243
+G P G P + ++G AR + P GA+ G+ A
Sbjct: 827 GEPGDAGAKGDAGPPGPAG-----PAGPPGPIGNVGAPGAKGARGSAGPPGAT--GFPGA 879
Query: 244 AGP-SPELGSGQGWLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTP-- 300
AG P SG P P + +GP PG + +P
Sbjct: 880 AGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA 939
Query: 301 DGRANGLPRALNQGLQRTRQGKAGKSQLLPSKARKCQRQGAWGPEESDQCLELGQYLDQE 360
DG A QG+ R G G LP + + G GP
Sbjct: 940 DGPAGAPGTPGPQGIAGQR-GVVG----LPGQRGERGFPGLPGPSG-------------- 980
Query: 361 VEATRTGLAKAGSDMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATHCGDFEKAPTARGL 420
E + G + A + G G GE R A + +P A+G
Sbjct: 981 -EPGKQGPSGASGERGPPGPMGPPGLAGPPGESG----REGAPGAEGSPGRDGSPGAKGD 1035
Query: 421 EGRQVVPPPPPAP----RPGPV-----LGAPGELALAGAAAAYPGKGAAPYAPPAPSR-- 469
G PP AP PGPV G GE AG A GA A P R
Sbjct: 1036 RGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGD 1095
Query: 470 ------------------SALAHPISLMTLPGE---AGAAGLAPPGHAAAFGGPPGGLLL 508
S L P PGE +GA+G A P G PG L
Sbjct: 1096 KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGL 1155
Query: 509 DALPGPYAAAAAGPLGAAPDRFP 531
+ LPGP GP G D P
Sbjct: 1156 NGLPGP--IGPPGPRGRTGDAGP 1176
Score = 37.4 bits (85), Expect = 0.039
Identities = 37/107 (34%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 428 PPPPAPRPGPVLGAPGELALAGA--AAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEA 485
PP P PG + G PGE GA A PG+ +P A + A P PG
Sbjct: 996 PPGPMGPPG-LAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGP------PGAP 1048
Query: 486 GAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFPA 532
GA G P A G G GP A AGP+G R PA
Sbjct: 1049 GAPGAPGPVGPAGKSGDRGE------TGP--AGPAGPVGPVGARGPA 1087
Score = 36.6 bits (83), Expect = 0.066
Identities = 44/147 (29%), Positives = 53/147 (36%), Gaps = 26/147 (17%)
Query: 418 RGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAA--AAYPGKGAAPYAPPAPSRSALAHP 475
RG G Q P PP G+PGE +GA+ A G + AP + L P
Sbjct: 1111 RGFSGLQGPPGPP---------GSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGP 1161
Query: 476 ISLMTLPGEAGAAG----LAPPGHAAAFGGPPGGLLLDALPGPYAAAA--------AGPL 523
I G G AG PPG G P G LP P A A
Sbjct: 1162 IGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGRYYRADDA 1221
Query: 524 GAAPDRFPADLDLDMFSGSLECDVESI 550
DR DL++D SL +E+I
Sbjct: 1222 NVVRDR---DLEVDTTLKSLSQQIENI 1245
Score = 36.2 bits (82), Expect = 0.087
Identities = 36/111 (32%), Positives = 40/111 (36%), Gaps = 24/111 (21%)
Query: 419 GLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAA-----AYPGKGAAPYAPPAPSRSALA 473
G GR +P P P P G PG L G A Y K + P P
Sbjct: 127 GPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGP-----M 181
Query: 474 HPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLG 524
P LPG GA G P G F GPPG P A+GP+G
Sbjct: 182 GPSGPRGLPGPPGAPG--PQG----FQGPPG--------EPGEPGASGPMG 218
Score = 35.0 bits (79), Expect = 0.19
Identities = 36/111 (32%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 418 RGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPIS 477
RGL G + P AP P G G AG G P P A A P
Sbjct: 304 RGLPGER---GRPGAPGPAGARGNDGATGAAGPPGP-TGPAGPPGFPGAVGAKGEAGPQG 359
Query: 478 LMTLPGEAGAAGL-APPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAP 527
G G G PPG A A GP G D PG A A + AP
Sbjct: 360 PRGSEGPQGVRGEPGPPGPAGA-AGPAGNPGADGQPGAKGANGAPGIAGAP 409
Score = 35.0 bits (79), Expect = 0.19
Identities = 39/119 (32%), Positives = 44/119 (36%), Gaps = 13/119 (10%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAA--AAYPGKGAAPYAPPAPSRSAL 472
P A G +G P + P V G PG AGAA A PG P A A +
Sbjct: 346 PGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGI 405
Query: 473 AHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFP 531
A PG GA G P GGPPG PG A + G GA + P
Sbjct: 406 A------GAPGFPGARG---PSGPQGPGGPPGPKGNSGEPG--APGSKGDTGAKGEPGP 453
Score = 33.5 bits (75), Expect = 0.56
Identities = 31/112 (27%), Positives = 37/112 (33%), Gaps = 17/112 (15%)
Query: 417 ARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPI 476
ARG +G PP P G PG + G A +G+ P
Sbjct: 321 ARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGS-------------EGPQ 367
Query: 477 SLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPG----PYAAAAAGPLG 524
+ PG G AG A P G PG + PG P A GP G
Sbjct: 368 GVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSG 419
Score = 32.3 bits (72), Expect = 1.3
Identities = 37/113 (32%), Positives = 41/113 (36%), Gaps = 17/113 (15%)
Query: 427 PPPPPAPRPGP-VLGAPGELALAGAAAAYPGKGAAPYAPP-----APSRSALAHPISLMT 480
PP P R P G PG G + KG A A P +P + +
Sbjct: 246 PPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG 305
Query: 481 LPGEAGAAGLAPPGHAAAFG--------GPPGGLLLDALPG-PYAAAAAGPLG 524
LPGE G G PG A A G GPPG PG P A A G G
Sbjct: 306 LPGERGRPG--APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAG 356
Score = 31.6 bits (70), Expect = 2.1
Identities = 39/111 (35%), Positives = 45/111 (40%), Gaps = 28/111 (25%)
Query: 419 GLEGRQV-VPPPPPAPRPGPV--LGAPGELALAGAAAAYPGKGAAPYAP-PAPSRSALAH 474
GL+G + P P PG GAPG++ G PG+ P AP PA +R
Sbjct: 272 GLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGL----PGERGRPGAPGPAGARGN--- 324
Query: 475 PISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAA-AAAGPLG 524
G GAAG PPG GPPG PG A AGP G
Sbjct: 325 -------DGATGAAG--PPGPTGP-AGPPG------FPGAVGAKGEAGPQG 359
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 46.6 bits (109), Expect = 6e-05
Identities = 40/118 (33%), Positives = 47/118 (39%), Gaps = 12/118 (10%)
Query: 417 ARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYP-----GKGAAPYAPPAPSRSA 471
A G G Q +P PP P G G PG+ + G A A G+ P +P
Sbjct: 658 APGPSGFQGLPGPPGPPGEG---GKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQG 714
Query: 472 LAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAA-AGPLGAAPD 528
L P L PG G G + P GPPG L +PG AA AGP G D
Sbjct: 715 LQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPG---LQGMPGERGAAGIAGPKGDRGD 769
Score = 45.1 bits (105), Expect = 2e-04
Identities = 110/404 (27%), Positives = 134/404 (33%), Gaps = 68/404 (16%)
Query: 138 KVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRAPSSSFVLRGSP 197
K GA G GG G +G PG G + ++G P G R PS L G
Sbjct: 490 KRGARGEPGGVGP-IGPPGERGAPGNRGFPGQDGLAGPKGAP---GERGPSG---LAGPK 542
Query: 198 APRADGG--GEVTFPEVATCEVVDLGIGPQARAFSVPLGASLQGWGTAAGPSPELGSGQG 255
D G GE P GPQ + P GA + G P P+ GQ
Sbjct: 543 GANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVG--PSGAPGED-GRPGPPGPQGARGQP 599
Query: 256 WLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTP--DGR--ANGLPRAL 311
+ +P A+G PG + L P DG A G P
Sbjct: 600 GVMGFPGPKG---------ANG---EPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA 647
Query: 312 NQGLQRTRQGKAGKSQLLPSKARKCQRQGAWGPEESDQCLELGQYLDQEV--EATRTGLA 369
+R QG G S QG GP E G+ DQ V EA GL
Sbjct: 648 GPAGERGEQGAPGPSGF----------QGLPGPPGPPG--EGGKPGDQGVPGEAGAPGLV 695
Query: 370 KAGSDMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATHCGDFEKAPTARGLEGRQVVPPP 429
+ G G+ S + + G P G +G P
Sbjct: 696 GPRGERGFPGERGSPGAQGLQGPRG----------------LPGTPGTDGPKGASGPAGP 739
Query: 430 PPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPP--APSRSALAHPISLMTLPGEAGA 487
P A P + G PGE AG A +G P AP + + PG AGA
Sbjct: 740 PGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGA 799
Query: 488 AG----LAPPGHAAAFG--GPPGGLLLDALPGPYAAAAAGPLGA 525
G + PPG A + G G PG PGP A AGP GA
Sbjct: 800 NGEKGEVGPPGPAGSAGARGAPGERGETGPPGP--AGFAGPPGA 841
Score = 44.7 bits (104), Expect = 2e-04
Identities = 41/119 (34%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 414 APTARGLEGRQ--VVPPPPPAPRPGPVL-GAPGELALAGAAAAYPGKGAA-----PYAPP 465
A ARG +G+ PP P P GP GAPG AG A +GA P P
Sbjct: 340 AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG 399
Query: 466 APSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLG 524
+P + + +PG G+AG A F GP G PGP A GPLG
Sbjct: 400 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP------PGP--QGATGPLG 450
Score = 38.5 bits (88), Expect = 0.017
Identities = 42/126 (33%), Positives = 45/126 (35%), Gaps = 26/126 (20%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAG--AAAAYPGKGAAPYAPPA------ 466
P G +G Q P P P GAPG G A PG G P PP
Sbjct: 458 PGIAGFKGEQ---GPKGEPGPAGPQGAPGPAGEEGKRGARGEPG-GVGPIGPPGERGAPG 513
Query: 467 ----PSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAA--- 519
P + LA P PGE G +GLA P A G PG LPG
Sbjct: 514 NRGFPGQDGLAGPKGA---PGERGPSGLAGPKGANGDPGRPGE---PGLPGARGLTGRPG 567
Query: 520 -AGPLG 524
AGP G
Sbjct: 568 DAGPQG 573
Score = 38.1 bits (87), Expect = 0.023
Identities = 42/133 (31%), Positives = 46/133 (34%), Gaps = 29/133 (21%)
Query: 414 APTARGLEGRQVVP--PPPPAPRPGPVLGAPGELALAGAAAAYPGKG------------- 458
AP RG +G P P PP P PGP PG L G AA G
Sbjct: 145 APGPRGRDGEPGTPGNPGPPGP-PGP----PGPPGLGGNFAAQMAGGFDEKAGGAQLGVM 199
Query: 459 ------AAPYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALP 512
P PP P + P PGE G G++ P GPPG D
Sbjct: 200 QGPMGPMGPRGPPGP--AGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEA 257
Query: 513 G-PYAAAAAGPLG 524
G P A GP G
Sbjct: 258 GKPGKAGERGPPG 270
Score = 37.4 bits (85), Expect = 0.039
Identities = 42/136 (30%), Positives = 48/136 (35%), Gaps = 30/136 (22%)
Query: 414 APTARGLEGRQ--------VVPPPPPAPRPGPV-LGAPGELALAGAAAAYPGKGAAPYAP 464
AP G EG++ V P PP R P G PG+ LAG A +G + A
Sbjct: 481 APGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG 540
Query: 465 PA--------PSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYA 516
P P L L PG+AG G P A G PG PGP
Sbjct: 541 PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP------PGPQG 594
Query: 517 AAA-------AGPLGA 525
A GP GA
Sbjct: 595 ARGQPGVMGFPGPKGA 610
Score = 37.4 bits (85), Expect = 0.039
Identities = 38/117 (32%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 414 APTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALA 473
AP RGL G+ A PGP G GE GA PG P P
Sbjct: 625 APGLRGLPGKD--GETGAAGPPGPA-GPAGERGEQGA----PGPSGFQGLPGPPGPPGEG 677
Query: 474 HPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAA----GPLGAA 526
+PGEAGA GL P F G G L GP GP GA+
Sbjct: 678 GKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAS 734
Score = 37.0 bits (84), Expect = 0.051
Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 14/114 (12%)
Query: 417 ARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKG----AAPYAPPAPSRSAL 472
A G++G P +P P G PGE G A A +G P PP P
Sbjct: 304 APGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGP----- 358
Query: 473 AHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAA 526
P PG GA G A P A GP G PG + GP GA+
Sbjct: 359 VGPAGGPGFPGAPGAKGEAGPTGAR---GPEGAQGPRGEPG--TPGSPGPAGAS 407
Score = 37.0 bits (84), Expect = 0.051
Identities = 113/446 (25%), Positives = 143/446 (32%), Gaps = 90/446 (20%)
Query: 140 GASGWGGGWGRR--LGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRA------PSSSF 191
GA+G G G R +G G G GR G + PPG + + P+ S
Sbjct: 756 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA 815
Query: 192 VLRGSPAPRADGG--GEVTFPEVATCEVVDLGIGPQARAFSVPLGASLQGWGTAAGPSPE 249
RG+P R + G G F + G Q A + G + P P+
Sbjct: 816 GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQ 875
Query: 250 LGSGQGWLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTPDGRANGLPR 309
+G + P A A+G PG N N P G P
Sbjct: 876 GPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPG----------SNGNPGPPGP----PG 921
Query: 310 ALNQGLQRTRQGKAGKSQLLPSKARKCQRQGAWGPEESDQCLELGQYLDQEVEATR---- 365
+ + +G +G P +A + QG GP E G+ D
Sbjct: 922 PSGKDGPKGARGDSGP----PGRAGEPGLQGPAGPPG-----EKGEPGDDGPSGAEGPPG 972
Query: 366 -TGLAKAGSDMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATHCGDFEKAPTARGLEGRQ 424
GLA +G G R + G E + AP A G G
Sbjct: 973 PQGLAGQRGIVGLPGQRGERGFPGLPGPSGEP-------------GKQGAPGASGDRGPP 1019
Query: 425 VVPPPP----PAPRPGPV--LGAPGELALAGAAAAYPGKG-----AAPYAPPAPSRSALA 473
PP PA PG GA G GAA +G AP AP P A
Sbjct: 1020 GPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPA 1079
Query: 474 HPISLMTLPGEAGAAG-LAPPGHAAAFG--GPPG--------------GLL-------LD 509
P GEAGA G + P G A A G GP G GL L
Sbjct: 1080 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1139
Query: 510 ALPGPYAAA----AAGPLGAAPDRFP 531
LPGP + A+GP G + R P
Sbjct: 1140 GLPGPPGPSGDQGASGPAGPSGPRGP 1165
Score = 36.6 bits (83), Expect = 0.066
Identities = 34/115 (29%), Positives = 40/115 (34%), Gaps = 3/115 (2%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAH 474
P G G + P PP P G PG+ G +G P P P
Sbjct: 233 PGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGF-PGTPGLPGVKGHRG 291
Query: 475 PISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDR 529
L GEAGA G+ + G PG + LPG GP GAA R
Sbjct: 292 YPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPG--ERGRTGPAGAAGAR 344
Score = 35.0 bits (79), Expect = 0.19
Identities = 47/155 (30%), Positives = 55/155 (35%), Gaps = 41/155 (26%)
Query: 415 PTARGLEGR--------QVVP---------PPPPAPR-----------PGPV-----LGA 441
P ARGL GR +V P P PP P+ PGP G
Sbjct: 557 PGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGK 616
Query: 442 PGELALAGAAA--AYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAF 499
GE L GA PGK A P + A PG +G GL P
Sbjct: 617 AGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE 676
Query: 500 GGPPGGLLLDALPGPYAAAAAGPLGAAPDR-FPAD 533
GG PG +PG A A G +G +R FP +
Sbjct: 677 GGKPGD---QGVPG--EAGAPGLVGPRGERGFPGE 706
Score = 34.7 bits (78), Expect = 0.25
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 428 PPPPAPRPGP--VLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEA 485
PP PA PGP G PGE G + +G P P P A PG+A
Sbjct: 211 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGP-PGPPGKPGDDGEAGK------PGKA 263
Query: 486 GAAGLAPPGHAAAFGGPPG 504
G G P A F G PG
Sbjct: 264 GERGPPGPQGARGFPGTPG 282
Score = 34.7 bits (78), Expect = 0.25
Identities = 45/132 (34%), Positives = 50/132 (37%), Gaps = 28/132 (21%)
Query: 417 ARGLEGRQVVPPP--PPAPR--PGPV--LGAPGELALAGAAAAYPGKG----AAPYAPPA 466
A G+ G P P PP P+ GP+ G GE +AG KG A P P
Sbjct: 424 APGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPG 483
Query: 467 PSRSALAHPISLMTLPGEAGAAG-LAPPGHAAAFG--GPPGGLLLDALPGPYAA------ 517
P A GE G G + PPG A G G PG D L GP A
Sbjct: 484 P-----AGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPG---QDGLAGPKGAPGERGP 535
Query: 518 -AAAGPLGAAPD 528
AGP GA D
Sbjct: 536 SGLAGPKGANGD 547
Score = 33.5 bits (75), Expect = 0.56
Identities = 36/116 (31%), Positives = 42/116 (36%), Gaps = 19/116 (16%)
Query: 418 RGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPI- 476
RG G Q +P PP G G+ +G A P P P PS A+ I
Sbjct: 1133 RGFTGLQGLPGPP---------GPSGDQGASGPAG--PSGPRGPPGPVGPSGKDGANGIP 1181
Query: 477 SLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGP----YAAAAAGPLGAAPD 528
+ PG G +G P GPPG PGP A A GP PD
Sbjct: 1182 GPIGPPGPRGRSGETGPAGPPGNPGPPGP---PGPPGPGIDMSAFAGLGPREKGPD 1234
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 46.6 bits (109), Expect = 6e-05
Identities = 40/118 (33%), Positives = 47/118 (39%), Gaps = 12/118 (10%)
Query: 417 ARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYP-----GKGAAPYAPPAPSRSA 471
A G G Q +P PP P G G PG+ + G A A G+ P +P
Sbjct: 589 APGPSGFQGLPGPPGPPGEG---GKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQG 645
Query: 472 LAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAA-AGPLGAAPD 528
L P L PG G G + P GPPG L +PG AA AGP G D
Sbjct: 646 LQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPG---LQGMPGERGAAGIAGPKGDRGD 700
Score = 45.1 bits (105), Expect = 2e-04
Identities = 110/404 (27%), Positives = 134/404 (33%), Gaps = 68/404 (16%)
Query: 138 KVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRAPSSSFVLRGSP 197
K GA G GG G +G PG G + ++G P G R PS L G
Sbjct: 421 KRGARGEPGGVGP-IGPPGERGAPGNRGFPGQDGLAGPKGAP---GERGPSG---LAGPK 473
Query: 198 APRADGG--GEVTFPEVATCEVVDLGIGPQARAFSVPLGASLQGWGTAAGPSPELGSGQG 255
D G GE P GPQ + P GA + G P P+ GQ
Sbjct: 474 GANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVG--PSGAPGED-GRPGPPGPQGARGQP 530
Query: 256 WLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTP--DGR--ANGLPRAL 311
+ +P A+G PG + L P DG A G P
Sbjct: 531 GVMGFPGPKG---------ANG---EPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA 578
Query: 312 NQGLQRTRQGKAGKSQLLPSKARKCQRQGAWGPEESDQCLELGQYLDQEV--EATRTGLA 369
+R QG G S QG GP E G+ DQ V EA GL
Sbjct: 579 GPAGERGEQGAPGPSGF----------QGLPGPPGPPG--EGGKPGDQGVPGEAGAPGLV 626
Query: 370 KAGSDMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATHCGDFEKAPTARGLEGRQVVPPP 429
+ G G+ S + + G P G +G P
Sbjct: 627 GPRGERGFPGERGSPGAQGLQGPRG----------------LPGTPGTDGPKGASGPAGP 670
Query: 430 PPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPP--APSRSALAHPISLMTLPGEAGA 487
P A P + G PGE AG A +G P AP + + PG AGA
Sbjct: 671 PGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGA 730
Query: 488 AG----LAPPGHAAAFG--GPPGGLLLDALPGPYAAAAAGPLGA 525
G + PPG A + G G PG PGP A AGP GA
Sbjct: 731 NGEKGEVGPPGPAGSAGARGAPGERGETGPPGP--AGFAGPPGA 772
Score = 44.7 bits (104), Expect = 2e-04
Identities = 41/119 (34%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 414 APTARGLEGRQ--VVPPPPPAPRPGPVL-GAPGELALAGAAAAYPGKGAA-----PYAPP 465
A ARG +G+ PP P P GP GAPG AG A +GA P P
Sbjct: 271 AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG 330
Query: 466 APSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLG 524
+P + + +PG G+AG A F GP G PGP A GPLG
Sbjct: 331 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP------PGP--QGATGPLG 381
Score = 38.5 bits (88), Expect = 0.017
Identities = 42/126 (33%), Positives = 45/126 (35%), Gaps = 26/126 (20%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAG--AAAAYPGKGAAPYAPPA------ 466
P G +G Q P P P GAPG G A PG G P PP
Sbjct: 389 PGIAGFKGEQ---GPKGEPGPAGPQGAPGPAGEEGKRGARGEPG-GVGPIGPPGERGAPG 444
Query: 467 ----PSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAA--- 519
P + LA P PGE G +GLA P A G PG LPG
Sbjct: 445 NRGFPGQDGLAGPKGA---PGERGPSGLAGPKGANGDPGRPGE---PGLPGARGLTGRPG 498
Query: 520 -AGPLG 524
AGP G
Sbjct: 499 DAGPQG 504
Score = 38.1 bits (87), Expect = 0.023
Identities = 42/133 (31%), Positives = 46/133 (34%), Gaps = 29/133 (21%)
Query: 414 APTARGLEGRQVVP--PPPPAPRPGPVLGAPGELALAGAAAAYPGKG------------- 458
AP RG +G P P PP P PGP PG L G AA G
Sbjct: 76 APGPRGRDGEPGTPGNPGPPGP-PGP----PGPPGLGGNFAAQMAGGFDEKAGGAQLGVM 130
Query: 459 ------AAPYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALP 512
P PP P + P PGE G G++ P GPPG D
Sbjct: 131 QGPMGPMGPRGPPGP--AGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEA 188
Query: 513 G-PYAAAAAGPLG 524
G P A GP G
Sbjct: 189 GKPGKAGERGPPG 201
Score = 37.4 bits (85), Expect = 0.039
Identities = 42/136 (30%), Positives = 48/136 (35%), Gaps = 30/136 (22%)
Query: 414 APTARGLEGRQ--------VVPPPPPAPRPGPV-LGAPGELALAGAAAAYPGKGAAPYAP 464
AP G EG++ V P PP R P G PG+ LAG A +G + A
Sbjct: 412 APGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG 471
Query: 465 PA--------PSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYA 516
P P L L PG+AG G P A G PG PGP
Sbjct: 472 PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP------PGPQG 525
Query: 517 AAA-------AGPLGA 525
A GP GA
Sbjct: 526 ARGQPGVMGFPGPKGA 541
Score = 37.4 bits (85), Expect = 0.039
Identities = 38/117 (32%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 414 APTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALA 473
AP RGL G+ A PGP G GE GA PG P P
Sbjct: 556 APGLRGLPGKD--GETGAAGPPGPA-GPAGERGEQGA----PGPSGFQGLPGPPGPPGEG 608
Query: 474 HPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAA----GPLGAA 526
+PGEAGA GL P F G G L GP GP GA+
Sbjct: 609 GKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAS 665
Score = 37.0 bits (84), Expect = 0.051
Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 14/114 (12%)
Query: 417 ARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKG----AAPYAPPAPSRSAL 472
A G++G P +P P G PGE G A A +G P PP P
Sbjct: 235 APGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGP----- 289
Query: 473 AHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAA 526
P PG GA G A P A GP G PG + GP GA+
Sbjct: 290 VGPAGGPGFPGAPGAKGEAGPTGAR---GPEGAQGPRGEPG--TPGSPGPAGAS 338
Score = 37.0 bits (84), Expect = 0.051
Identities = 113/446 (25%), Positives = 143/446 (32%), Gaps = 90/446 (20%)
Query: 140 GASGWGGGWGRR--LGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRA------PSSSF 191
GA+G G G R +G G G GR G + PPG + + P+ S
Sbjct: 687 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA 746
Query: 192 VLRGSPAPRADGG--GEVTFPEVATCEVVDLGIGPQARAFSVPLGASLQGWGTAAGPSPE 249
RG+P R + G G F + G Q A + G + P P+
Sbjct: 747 GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQ 806
Query: 250 LGSGQGWLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTPDGRANGLPR 309
+G + P A A+G PG N N P G P
Sbjct: 807 GPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPG----------SNGNPGPPGP----PG 852
Query: 310 ALNQGLQRTRQGKAGKSQLLPSKARKCQRQGAWGPEESDQCLELGQYLDQEVEATR---- 365
+ + +G +G P +A + QG GP E G+ D
Sbjct: 853 PSGKDGPKGARGDSGP----PGRAGEPGLQGPAGPPG-----EKGEPGDDGPSGAEGPPG 903
Query: 366 -TGLAKAGSDMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATHCGDFEKAPTARGLEGRQ 424
GLA +G G R + G E + AP A G G
Sbjct: 904 PQGLAGQRGIVGLPGQRGERGFPGLPGPSGEP-------------GKQGAPGASGDRGPP 950
Query: 425 VVPPPP----PAPRPGPV--LGAPGELALAGAAAAYPGKG-----AAPYAPPAPSRSALA 473
PP PA PG GA G GAA +G AP AP P A
Sbjct: 951 GPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPA 1010
Query: 474 HPISLMTLPGEAGAAG-LAPPGHAAAFG--GPPG--------------GLL-------LD 509
P GEAGA G + P G A A G GP G GL L
Sbjct: 1011 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1070
Query: 510 ALPGPYAAA----AAGPLGAAPDRFP 531
LPGP + A+GP G + R P
Sbjct: 1071 GLPGPPGPSGDQGASGPAGPSGPRGP 1096
Score = 36.6 bits (83), Expect = 0.066
Identities = 34/115 (29%), Positives = 40/115 (34%), Gaps = 3/115 (2%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAH 474
P G G + P PP P G PG+ G +G P P P
Sbjct: 164 PGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGF-PGTPGLPGVKGHRG 222
Query: 475 PISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDR 529
L GEAGA G+ + G PG + LPG GP GAA R
Sbjct: 223 YPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPG--ERGRTGPAGAAGAR 275
Score = 35.0 bits (79), Expect = 0.19
Identities = 47/155 (30%), Positives = 55/155 (35%), Gaps = 41/155 (26%)
Query: 415 PTARGLEGR--------QVVP---------PPPPAPR-----------PGPV-----LGA 441
P ARGL GR +V P P PP P+ PGP G
Sbjct: 488 PGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGK 547
Query: 442 PGELALAGAAA--AYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAF 499
GE L GA PGK A P + A PG +G GL P
Sbjct: 548 AGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE 607
Query: 500 GGPPGGLLLDALPGPYAAAAAGPLGAAPDR-FPAD 533
GG PG +PG A A G +G +R FP +
Sbjct: 608 GGKPGD---QGVPG--EAGAPGLVGPRGERGFPGE 637
Score = 34.7 bits (78), Expect = 0.25
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 428 PPPPAPRPGP--VLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEA 485
PP PA PGP G PGE G + +G P P P A PG+A
Sbjct: 142 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGP-PGPPGKPGDDGEAGK------PGKA 194
Query: 486 GAAGLAPPGHAAAFGGPPG 504
G G P A F G PG
Sbjct: 195 GERGPPGPQGARGFPGTPG 213
Score = 34.7 bits (78), Expect = 0.25
Identities = 45/132 (34%), Positives = 50/132 (37%), Gaps = 28/132 (21%)
Query: 417 ARGLEGRQVVPPP--PPAPR--PGPV--LGAPGELALAGAAAAYPGKG----AAPYAPPA 466
A G+ G P P PP P+ GP+ G GE +AG KG A P P
Sbjct: 355 APGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPG 414
Query: 467 PSRSALAHPISLMTLPGEAGAAG-LAPPGHAAAFG--GPPGGLLLDALPGPYAA------ 517
P A GE G G + PPG A G G PG D L GP A
Sbjct: 415 P-----AGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPG---QDGLAGPKGAPGERGP 466
Query: 518 -AAAGPLGAAPD 528
AGP GA D
Sbjct: 467 SGLAGPKGANGD 478
Score = 33.5 bits (75), Expect = 0.56
Identities = 36/116 (31%), Positives = 42/116 (36%), Gaps = 19/116 (16%)
Query: 418 RGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPI- 476
RG G Q +P PP G G+ +G A P P P PS A+ I
Sbjct: 1064 RGFTGLQGLPGPP---------GPSGDQGASGPAG--PSGPRGPPGPVGPSGKDGANGIP 1112
Query: 477 SLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGP----YAAAAAGPLGAAPD 528
+ PG G +G P GPPG PGP A A GP PD
Sbjct: 1113 GPIGPPGPRGRSGETGPAGPPGNPGPPGP---PGPPGPGIDMSAFAGLGPREKGPD 1165
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 46.6 bits (109), Expect = 6e-05
Identities = 53/179 (29%), Positives = 65/179 (36%), Gaps = 42/179 (23%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAH 474
P L+G +++PPPPP P PG + P L AG P GA PP +A+
Sbjct: 897 PQPPPLQGTEMLPPPPP-PLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPP 955
Query: 475 PISL----MTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDA-LPGPYAAAAAG-----PLG 524
P L + LP AG+ PP G PP L A +P P AG PL
Sbjct: 956 PPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1015
Query: 525 AAPDRFPADLDLDMFSGSLECDVESIILNDFMDSDEMDFNFDSALPPPPP-GLAGAPPP 582
A P L + +PPPPP AG PPP
Sbjct: 1016 GAGIPPPPPLP------------------------------GAGIPPPPPLPGAGIPPP 1044
Score = 37.4 bits (85), Expect = 0.039
Identities = 49/162 (30%), Positives = 54/162 (33%), Gaps = 46/162 (28%)
Query: 429 PPPAPRPGPVLGAPGELALAGAAAAYPGKGAA-PYAPPAPSRSALAHPISLMTLPGEAGA 487
PPP P PG + P L AG P GA P PP P P LPG
Sbjct: 976 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP----PLPG---- 1027
Query: 488 AGLAPPGHAAAFGGPPGGLLLDA-LPGPYAAAAAG-----PLGAAPDRFPADLDLDMFSG 541
AG+ PP G PP L A +P P AG PL A P L
Sbjct: 1028 AGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP------ 1081
Query: 542 SLECDVESIILNDFMDSDEMDFNFDSALPPPPP-GLAGAPPP 582
+ +PPPPP AG PPP
Sbjct: 1082 ------------------------GAGIPPPPPLPGAGIPPP 1099
Score = 36.6 bits (83), Expect = 0.066
Identities = 35/98 (35%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 426 VPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAA-PYAPPAPSRSALAHPISLMTLPGE 484
+PPPPP P G + P L AG P GA P PP P P LPG
Sbjct: 1008 IPPPPPLPGAG--IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP----PLPG- 1060
Query: 485 AGAAGLAPPGHAAAFGGPPGGLLLDA-LPGPYAAAAAG 521
AG+ PP G PP L A +P P AG
Sbjct: 1061 ---AGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG 1095
Score = 36.6 bits (83), Expect = 0.066
Identities = 33/98 (33%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 415 PTARGLEGRQVVPPPP--------PAPRPGPVLGAPGELALAGAAAAYPGKGAA-PYAPP 465
P L G + PPPP P P PG + P L AG P GA P PP
Sbjct: 1009 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPP 1068
Query: 466 APSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPP 503
P P LPG AG+ PP G PP
Sbjct: 1069 LPGAGIPPPP----PLPG----AGIPPPPPLPGAGIPP 1098
Score = 36.6 bits (83), Expect = 0.066
Identities = 32/97 (32%), Positives = 36/97 (37%), Gaps = 15/97 (15%)
Query: 415 PTARGLEGRQVVPPPP--------PAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPA 466
P L G + PPPP P P PG + P L AG P GA PP
Sbjct: 1086 PPPPPLPGAGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPP 1145
Query: 467 PSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPP 503
R + P LPG AG+ PP G PP
Sbjct: 1146 LPRVGIPPP---PPLPG----AGIPPPPPLPGAGIPP 1175
Score = 35.8 bits (81), Expect = 0.11
Identities = 33/98 (33%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 415 PTARGLEGRQVVPPPP--------PAPRPGPVLGAPGELALAGAAAAYPGKGAA-PYAPP 465
P L G + PPPP P P PG + P L AG P GA P PP
Sbjct: 1042 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPP 1101
Query: 466 APSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPP 503
P P LPG AG+ PP G PP
Sbjct: 1102 LPGVGIPPPP----PLPG----AGIPPPPPLPGAGIPP 1131
Score = 35.8 bits (81), Expect = 0.11
Identities = 35/108 (32%), Positives = 38/108 (35%), Gaps = 20/108 (18%)
Query: 426 VPPPPPAPR---------PGPVLGAPGELALAGAAAAYPGKGAA-PYAPPAPSRSALAHP 475
+PPPPP PR PG + P L AG P G P PP P P
Sbjct: 1140 IPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPPP 1199
Query: 476 ISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPL 523
LPG AG+ PP G PP LP P PL
Sbjct: 1200 ----PLPG----AGIPPPPPLPGMGIPPAP--APPLPPPGTGIPPPPL 1237
Score = 34.7 bits (78), Expect = 0.25
Identities = 51/183 (27%), Positives = 58/183 (31%), Gaps = 64/183 (34%)
Query: 416 TARGLEGRQVVPPPPPAPRPG------PVLGAPGELALAGA------AAAYPGKGAAPYA 463
++ + G +VPPPPP P PG P P L G PG G P
Sbjct: 866 SSSSMPGLGMVPPPPP-PLPGMTVPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPP-P 923
Query: 464 PPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDA---LPGPYAAAAA 520
PP P L P LPG AG+ PP PP L A LP P A
Sbjct: 924 PPLPGAGILPLP----PLPG----AGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGI 975
Query: 521 GPLGAAPDRFPADLDLDMFSGSLECDVESIILNDFMDSDEMDFNFDSALPPPPP-GLAGA 579
P P P + +PPPPP AG
Sbjct: 976 PP----PPPLPG----------------------------------AGIPPPPPLPGAGI 997
Query: 580 PPP 582
PPP
Sbjct: 998 PPP 1000
Score = 32.0 bits (71), Expect = 1.6
Identities = 27/91 (29%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAH 474
P + E R+ P PP+P PV AP A AA P A P+ P A
Sbjct: 280 PESLAAEPRE--PQQPPSPGGLPVSEAPSLPAAQPAAKDSPSSTAFPFPEAGPGEEAAGA 337
Query: 475 PISLMTLPGEAGAAGLAPPGHAAAFGGPPGG 505
P+ GA G AF P G
Sbjct: 338 PV--------RGAGDTDEEGEEDAFEDAPRG 360
Score = 31.6 bits (70), Expect = 2.1
Identities = 32/105 (30%), Positives = 39/105 (37%), Gaps = 17/105 (16%)
Query: 415 PTARGLEGRQVVPPPP--------PAPRPGPVLGAPGELALAG--AAAAYPGKGAAPY-A 463
P L G + PPPP P P PG + P L AG PG G P A
Sbjct: 1163 PPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGMGIPPAPA 1222
Query: 464 PPAPSRSALAHPISLMTLPG-----EAGAAGLAPPGHAAAFGGPP 503
PP P P L+ + G + G++ L P F PP
Sbjct: 1223 PPLPPPGTGIPPPPLLPVSGPPLLPQVGSSTLPTP-QVCGFLPPP 1266
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 46.6 bits (109), Expect = 6e-05
Identities = 50/175 (28%), Positives = 66/175 (37%), Gaps = 33/175 (18%)
Query: 425 VVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGE 484
V PP P+P P PG + G + P G P A P PS + P + P
Sbjct: 651 VPPPEAPSPFRAPPFHPPGPMPSVG---SMPSAGPMPSAGPMPSAGPV--PSARPGPPTT 705
Query: 485 AGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAA-------GPLGAAPDRFPADLDLD 537
A GL+ PG + PP LPGP A P G P P D +
Sbjct: 706 ANHLGLSVPGLVSV---PP-----RLLPGPENHRAGSNEDPILAPSGTPPPTIPPD---E 754
Query: 538 MFSGSL---------ECDVESIILNDFMDSDEMDFNFDSALPP-PPPGLAGAPPP 582
F G + + + + ++ DSD+ LPP PPP +GA PP
Sbjct: 755 TFGGRVPRPAFVHYDKEEASDVEISLESDSDDSVVIVPEGLPPLPPPPPSGATPP 809
Score = 46.2 bits (108), Expect = 8e-05
Identities = 53/175 (30%), Positives = 64/175 (36%), Gaps = 37/175 (21%)
Query: 428 PPPPAPRP--GPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEA 485
PPP AP P P PG + G+ P G P A P PS + P + P A
Sbjct: 652 PPPEAPSPFRAPPFHPPGPMPSVGSM---PSAGPMPSAGPMPSAGPV--PSARPGPPTTA 706
Query: 486 GAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAG-------PLGAAPDRFPADLDLDM 538
GL+ PG + PP LPGP A P G P P D +
Sbjct: 707 NHLGLSVPGLVSV---PPR-----LLPGPENHRAGSNEDPILAPSGTPPPTIPPD---ET 755
Query: 539 FSGSLE------------CDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPP 581
F G + DVE + +D DS + LPPPPP A PP
Sbjct: 756 FGGRVPRPAFVHYDKEEASDVEISLESDSDDSVVIVPEGLPPLPPPPPSGATPPP 810
Score = 34.3 bits (77), Expect = 0.33
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 427 PPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAP 461
PPPPP P PGPV P +L G PG G P
Sbjct: 842 PPPPPPPVPGPVTLPPPQLVPEGT----PGGGGPP 872
>gi|24497506 forkhead box A3 [Homo sapiens]
Length = 350
Score = 46.6 bits (109), Expect = 6e-05
Identities = 39/118 (33%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 16 FAPQSRPRSCTWPLPQPDLAGDEDGAL------GAGVAEGAEDCGPERRATAPAMAPAPP 69
+ P P S PLP LA A G GV+ G+ G P
Sbjct: 50 YPPGGLPAS---PLPSGPLAPPAPAAPLGPTFPGLGVSGGSSSSGYGAPGPGLVHGKEMP 106
Query: 70 LGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVRYVPYFKD 127
G PL AK SY LIT AI+ AP K LTLS+IY W++ PY+++
Sbjct: 107 KGYR-RPLAHAKPP-------YSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRE 156
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 46.2 bits (108), Expect = 8e-05
Identities = 45/124 (36%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 415 PTARGLEGRQVVPPPPP-APRPGP--VLGAPGELALAGAAAAYPGK--GAAPYAPPAPSR 469
P A G EG + P P + + GP + G PGE L GA A PG G P PP P
Sbjct: 1011 PGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGA-PGLKGGEGPQGPPGPVG 1069
Query: 470 S-------ALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYA-AAAAG 521
S A PI L PG G G A A GP G D + GP AG
Sbjct: 1070 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1129
Query: 522 PLGA 525
P G+
Sbjct: 1130 PAGS 1133
Score = 40.8 bits (94), Expect = 0.004
Identities = 41/132 (31%), Positives = 48/132 (36%), Gaps = 25/132 (18%)
Query: 412 EKAPTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGA----APYAPPAP 467
EK P +G GR V P P P G+PGE G KG+ PP P
Sbjct: 1106 EKGP--QGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGP 1163
Query: 468 SRSALAHPISLMTLPGEAGAAGLAPPGHAAAFG-----------GPPGGLLLDALPGPYA 516
L P+ + G G G P G FG GPPG + L LPGP
Sbjct: 1164 P--GLQGPVGAPGIAGGDGEPG--PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG 1219
Query: 517 AAA----AGPLG 524
GP+G
Sbjct: 1220 EKGENGDVGPMG 1231
Score = 40.0 bits (92), Expect = 0.006
Identities = 40/112 (35%), Positives = 44/112 (39%), Gaps = 19/112 (16%)
Query: 425 VVPPPPPAPRPGPV--------LGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPI 476
VV P P GP+ G PGE L GAA GK A P S P
Sbjct: 980 VVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAA----GKEGAKGDPGPQGISGKDGPA 1035
Query: 477 SLMTLPGEAGAAGL-APPGHAAAFG--GPPGGLLLDALPGPY-AAAAAGPLG 524
L PGE G G PG G GPPG + PG +A AGP+G
Sbjct: 1036 GLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPV---GSPGERGSAGTAGPIG 1084
Score = 35.8 bits (81), Expect = 0.11
Identities = 38/119 (31%), Positives = 42/119 (35%), Gaps = 27/119 (22%)
Query: 418 RGLEGRQVVPPPPPAPRPGPV--------LGAPGELALAG-----AAAAYPG-KG----A 459
RG++G PP P +PG G PGE G PG KG
Sbjct: 576 RGVQG-----PPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGER 630
Query: 460 APYAPPAP----SRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGP 514
P PP P I LPGEAG GL P G PG +D PGP
Sbjct: 631 GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGP 689
Score = 34.3 bits (77), Expect = 0.33
Identities = 50/173 (28%), Positives = 61/173 (35%), Gaps = 40/173 (23%)
Query: 427 PPPPPAPRPGPVLGAPGELALAGAA----AAYPGKGAAPYAPPAPSRSALAHPISLMT-L 481
P PP GP G P E + + AY KG A+ P L+
Sbjct: 405 PTSPPNEEFGP--GVPAETDITETSINGHGAYGEKGQK-------GEPAVVEPGMLVEGP 455
Query: 482 PGEAGAAG-LAPPGHAAAFG--------GPPG--GLL-LDALPGPYAAAAAGPLGAAPDR 529
PG AG AG + PPG G GPPG GL D LPGP G + P R
Sbjct: 456 PGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGP-----PGTMLMLPFR 510
Query: 530 FPADLDLDMFSGSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPP 582
+ D + E ++I+ PP P GL G P P
Sbjct: 511 YGGDGSKGPTISAQEAQAQAIL---------QQARIALRGPPGPMGLTGRPGP 554
Score = 33.9 bits (76), Expect = 0.43
Identities = 51/170 (30%), Positives = 57/170 (33%), Gaps = 64/170 (37%)
Query: 415 PTARGLEGRQ-------------------VVPPPPPAPRPGP-----VLGAPGELALAGA 450
P A G EGRQ V P PA +PGP + G GE L GA
Sbjct: 1377 PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGA 1436
Query: 451 AAAYPGKGAAPYAPPA--------PSRSALAHP--ISLMT------------LPGEAGAA 488
A G P PP S+ HP I L+ LPG G+
Sbjct: 1437 AGQDGPPG--PMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSP 1494
Query: 489 GL----APPGHAAAFG--GPPGGLLLDALPGPYA----AAAAGPLGAAPD 528
G PG A G GPPG LPGP + GP G D
Sbjct: 1495 GAKGDGGIPGPAGPLGPPGPPG------LPGPQGPKGNKGSTGPAGQKGD 1538
Score = 33.1 bits (74), Expect = 0.73
Identities = 35/121 (28%), Positives = 38/121 (31%), Gaps = 22/121 (18%)
Query: 418 RGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPIS 477
RGL G + P P P V G PG G G+ P P L P
Sbjct: 663 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ----GEPGPPGQQGNPGPQGLPGPQG 718
Query: 478 LMTLPGEAGAAGL----------APPGHAAAFG--------GPPGGLLLDALPGPYAAAA 519
+ PGE G G PPGH G GPPG PGP
Sbjct: 719 PIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKG 778
Query: 520 A 520
A
Sbjct: 779 A 779
Score = 33.1 bits (74), Expect = 0.73
Identities = 51/177 (28%), Positives = 57/177 (32%), Gaps = 44/177 (24%)
Query: 427 PPPPPAPR-PGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEA 485
PP PP PR P GA G G+ + G G GE
Sbjct: 1232 PPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEK----------------------GEP 1269
Query: 486 GAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAA----AAGPLG-------AAPDRFPADL 534
G AG P A GGP G GP AA A GP G P FP D
Sbjct: 1270 GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP 1329
Query: 535 DLDMFSGSLECDVESIILNDFMDSDE-MDFNFDSALPPPPPGLAGAP-PPNQSWVPG 589
G D + D+ D + PP P G AG P PP + PG
Sbjct: 1330 GPPGEPGPAG--------QDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1378
Score = 32.3 bits (72), Expect = 1.3
Identities = 106/414 (25%), Positives = 134/414 (32%), Gaps = 80/414 (19%)
Query: 138 KVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRAPSSSFVLRGSP 197
K G G G G R G+PG G + R +G PG R P +G P
Sbjct: 587 KPGKRGRPGADGGR-GMPGEP---GAKGDRGFDGLPGLPGDKGHRGERGP------QGPP 636
Query: 198 APRADGG-----GEVTFPEVATCEVVDLGI-GPQARAFSVPLGASLQGWGTAAGPSPELG 251
P D G GE+ P E G+ GP+ P + G GP +G
Sbjct: 637 GPPGDDGMRGEDGEIG-PRGLPGEAGPRGLLGPRGTP-GAPGQPGMAGVDGPPGPKGNMG 694
Query: 252 SGQGWLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTPDGRAN--GLPR 309
QG P P +P + L GP PG P G+ GLP
Sbjct: 695 P-QGE-PGPPGQQGNPGPQGLPGPQGPIGPPGEK-------------GPQGKPGLAGLPG 739
Query: 310 ALNQGLQRTRQGKAGKSQLL--PSKARKCQRQGAWGPEESDQCLELGQYLDQEVEATRTG 367
A ++G++G+ L P G G + +D L + E G
Sbjct: 740 ADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLK---GSKGEKGEDG 796
Query: 368 LAKAGSDMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATHCGDFEKAPTA-------RGL 420
DMG GD GE+ ++ R G+ PT G
Sbjct: 797 FPGFKGDMGLKGD---------RGEVGQIGPR--GEDGPEGPKGRAGPTGDPGPSGQAGE 845
Query: 421 EGRQVVPPPPPAP-RPGP--------VLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSA 471
+G+ VP P P R GP GA GE G A +G P SR A
Sbjct: 846 KGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGA 905
Query: 472 LAHPISLMTLPGEAGAAGL-APPGHAAAFG-----------GPPGGLLLDALPG 513
P G +G G PPG G GPPG D LPG
Sbjct: 906 RG-PTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 958
Score = 32.0 bits (71), Expect = 1.6
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 128 KGDSNSSA-GWKVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRA 186
KGD K G +G G G R GLPGA GL+ G +G P G S
Sbjct: 1020 KGDPGPQGISGKDGPAGLRGFPGER-GLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG 1078
Query: 187 PSSSFVLRGSPAPRADGG 204
+ L G P P+ G
Sbjct: 1079 TAGPIGLPGRPGPQGPPG 1096
Score = 30.4 bits (67), Expect = 4.8
Identities = 43/166 (25%), Positives = 55/166 (33%), Gaps = 24/166 (14%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVL----------GAPGELALAGAAAAYPGKG-----A 459
P A G +G PP P P P L G PG + L G KG
Sbjct: 1434 PGAAGQDG----PPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1489
Query: 460 APYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAA 519
+P A + P + PG G G P GP G LPGP +
Sbjct: 1490 TQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGP--PGS 1547
Query: 520 AGPLGAAPDRFP--ADLDLDMFSGSLECDVESIILNDFMDSDEMDF 563
GP G P + + ++ D + IL D+ D E F
Sbjct: 1548 PGPPGEVIQPLPILSSKKTRRHTEGMQADADDNIL-DYSDGMEEIF 1592
Score = 30.0 bits (66), Expect = 6.2
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 418 RGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPIS 477
+G G + PP A P G PG+ G PG P P P A
Sbjct: 1287 KGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGN----PGPVGFPGDPGPPGEPGPAGQDG 1342
Query: 478 LMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLG 524
+ GE G G P + GPPG PG AA A G G
Sbjct: 1343 VGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG--AAGAEGRQG 1387
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 46.2 bits (108), Expect = 8e-05
Identities = 45/124 (36%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 415 PTARGLEGRQVVPPPPP-APRPGP--VLGAPGELALAGAAAAYPGK--GAAPYAPPAPSR 469
P A G EG + P P + + GP + G PGE L GA A PG G P PP P
Sbjct: 960 PGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGA-PGLKGGEGPQGPPGPVG 1018
Query: 470 S-------ALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYA-AAAAG 521
S A PI L PG G G A A GP G D + GP AG
Sbjct: 1019 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1078
Query: 522 PLGA 525
P G+
Sbjct: 1079 PAGS 1082
Score = 40.8 bits (94), Expect = 0.004
Identities = 41/132 (31%), Positives = 48/132 (36%), Gaps = 25/132 (18%)
Query: 412 EKAPTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGA----APYAPPAP 467
EK P +G GR V P P P G+PGE G KG+ PP P
Sbjct: 1055 EKGP--QGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGP 1112
Query: 468 SRSALAHPISLMTLPGEAGAAGLAPPGHAAAFG-----------GPPGGLLLDALPGPYA 516
L P+ + G G G P G FG GPPG + L LPGP
Sbjct: 1113 P--GLQGPVGAPGIAGGDGEPG--PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG 1168
Query: 517 AAA----AGPLG 524
GP+G
Sbjct: 1169 EKGENGDVGPMG 1180
Score = 40.0 bits (92), Expect = 0.006
Identities = 40/112 (35%), Positives = 44/112 (39%), Gaps = 19/112 (16%)
Query: 425 VVPPPPPAPRPGPV--------LGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPI 476
VV P P GP+ G PGE L GAA GK A P S P
Sbjct: 929 VVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAA----GKEGAKGDPGPQGISGKDGPA 984
Query: 477 SLMTLPGEAGAAGL-APPGHAAAFG--GPPGGLLLDALPGPY-AAAAAGPLG 524
L PGE G G PG G GPPG + PG +A AGP+G
Sbjct: 985 GLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPV---GSPGERGSAGTAGPIG 1033
Score = 35.8 bits (81), Expect = 0.11
Identities = 38/119 (31%), Positives = 42/119 (35%), Gaps = 27/119 (22%)
Query: 418 RGLEGRQVVPPPPPAPRPGPV--------LGAPGELALAG-----AAAAYPG-KG----A 459
RG++G PP P +PG G PGE G PG KG
Sbjct: 525 RGVQG-----PPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGER 579
Query: 460 APYAPPAP----SRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGP 514
P PP P I LPGEAG GL P G PG +D PGP
Sbjct: 580 GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGP 638
Score = 34.3 bits (77), Expect = 0.33
Identities = 50/173 (28%), Positives = 61/173 (35%), Gaps = 40/173 (23%)
Query: 427 PPPPPAPRPGPVLGAPGELALAGAA----AAYPGKGAAPYAPPAPSRSALAHPISLMT-L 481
P PP GP G P E + + AY KG A+ P L+
Sbjct: 354 PTSPPNEEFGP--GVPAETDITETSINGHGAYGEKGQK-------GEPAVVEPGMLVEGP 404
Query: 482 PGEAGAAG-LAPPGHAAAFG--------GPPG--GLL-LDALPGPYAAAAAGPLGAAPDR 529
PG AG AG + PPG G GPPG GL D LPGP G + P R
Sbjct: 405 PGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGP-----PGTMLMLPFR 459
Query: 530 FPADLDLDMFSGSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPP 582
+ D + E ++I+ PP P GL G P P
Sbjct: 460 YGGDGSKGPTISAQEAQAQAIL---------QQARIALRGPPGPMGLTGRPGP 503
Score = 33.9 bits (76), Expect = 0.43
Identities = 51/170 (30%), Positives = 57/170 (33%), Gaps = 64/170 (37%)
Query: 415 PTARGLEGRQ-------------------VVPPPPPAPRPGP-----VLGAPGELALAGA 450
P A G EGRQ V P PA +PGP + G GE L GA
Sbjct: 1326 PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGA 1385
Query: 451 AAAYPGKGAAPYAPPA--------PSRSALAHP--ISLMT------------LPGEAGAA 488
A G P PP S+ HP I L+ LPG G+
Sbjct: 1386 AGQDGPPG--PMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSP 1443
Query: 489 GL----APPGHAAAFG--GPPGGLLLDALPGPYA----AAAAGPLGAAPD 528
G PG A G GPPG LPGP + GP G D
Sbjct: 1444 GAKGDGGIPGPAGPLGPPGPPG------LPGPQGPKGNKGSTGPAGQKGD 1487
Score = 33.1 bits (74), Expect = 0.73
Identities = 35/121 (28%), Positives = 38/121 (31%), Gaps = 22/121 (18%)
Query: 418 RGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPIS 477
RGL G + P P P V G PG G G+ P P L P
Sbjct: 612 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ----GEPGPPGQQGNPGPQGLPGPQG 667
Query: 478 LMTLPGEAGAAGL----------APPGHAAAFG--------GPPGGLLLDALPGPYAAAA 519
+ PGE G G PPGH G GPPG PGP
Sbjct: 668 PIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKG 727
Query: 520 A 520
A
Sbjct: 728 A 728
Score = 33.1 bits (74), Expect = 0.73
Identities = 51/177 (28%), Positives = 57/177 (32%), Gaps = 44/177 (24%)
Query: 427 PPPPPAPR-PGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEA 485
PP PP PR P GA G G+ + G G GE
Sbjct: 1181 PPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEK----------------------GEP 1218
Query: 486 GAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAA----AAGPLG-------AAPDRFPADL 534
G AG P A GGP G GP AA A GP G P FP D
Sbjct: 1219 GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP 1278
Query: 535 DLDMFSGSLECDVESIILNDFMDSDE-MDFNFDSALPPPPPGLAGAP-PPNQSWVPG 589
G D + D+ D + PP P G AG P PP + PG
Sbjct: 1279 GPPGEPGPAG--------QDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1327
Score = 32.3 bits (72), Expect = 1.3
Identities = 106/414 (25%), Positives = 134/414 (32%), Gaps = 80/414 (19%)
Query: 138 KVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRAPSSSFVLRGSP 197
K G G G G R G+PG G + R +G PG R P +G P
Sbjct: 536 KPGKRGRPGADGGR-GMPGEP---GAKGDRGFDGLPGLPGDKGHRGERGP------QGPP 585
Query: 198 APRADGG-----GEVTFPEVATCEVVDLGI-GPQARAFSVPLGASLQGWGTAAGPSPELG 251
P D G GE+ P E G+ GP+ P + G GP +G
Sbjct: 586 GPPGDDGMRGEDGEIG-PRGLPGEAGPRGLLGPRGTP-GAPGQPGMAGVDGPPGPKGNMG 643
Query: 252 SGQGWLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTPDGRAN--GLPR 309
QG P P +P + L GP PG P G+ GLP
Sbjct: 644 P-QGE-PGPPGQQGNPGPQGLPGPQGPIGPPGEK-------------GPQGKPGLAGLPG 688
Query: 310 ALNQGLQRTRQGKAGKSQLL--PSKARKCQRQGAWGPEESDQCLELGQYLDQEVEATRTG 367
A ++G++G+ L P G G + +D L + E G
Sbjct: 689 ADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLK---GSKGEKGEDG 745
Query: 368 LAKAGSDMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATHCGDFEKAPTA-------RGL 420
DMG GD GE+ ++ R G+ PT G
Sbjct: 746 FPGFKGDMGLKGD---------RGEVGQIGPR--GEDGPEGPKGRAGPTGDPGPSGQAGE 794
Query: 421 EGRQVVPPPPPAP-RPGP--------VLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSA 471
+G+ VP P P R GP GA GE G A +G P SR A
Sbjct: 795 KGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGA 854
Query: 472 LAHPISLMTLPGEAGAAGL-APPGHAAAFG-----------GPPGGLLLDALPG 513
P G +G G PPG G GPPG D LPG
Sbjct: 855 RG-PTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 907
Score = 32.0 bits (71), Expect = 1.6
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 128 KGDSNSSA-GWKVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRA 186
KGD K G +G G G R GLPGA GL+ G +G P G S
Sbjct: 969 KGDPGPQGISGKDGPAGLRGFPGER-GLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG 1027
Query: 187 PSSSFVLRGSPAPRADGG 204
+ L G P P+ G
Sbjct: 1028 TAGPIGLPGRPGPQGPPG 1045
Score = 30.4 bits (67), Expect = 4.8
Identities = 43/166 (25%), Positives = 55/166 (33%), Gaps = 24/166 (14%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVL----------GAPGELALAGAAAAYPGKG-----A 459
P A G +G PP P P P L G PG + L G KG
Sbjct: 1383 PGAAGQDG----PPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1438
Query: 460 APYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAA 519
+P A + P + PG G G P GP G LPGP +
Sbjct: 1439 TQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGP--PGS 1496
Query: 520 AGPLGAAPDRFP--ADLDLDMFSGSLECDVESIILNDFMDSDEMDF 563
GP G P + + ++ D + IL D+ D E F
Sbjct: 1497 PGPPGEVIQPLPILSSKKTRRHTEGMQADADDNIL-DYSDGMEEIF 1541
Score = 30.0 bits (66), Expect = 6.2
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 418 RGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPIS 477
+G G + PP A P G PG+ G PG P P P A
Sbjct: 1236 KGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGN----PGPVGFPGDPGPPGEPGPAGQDG 1291
Query: 478 LMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLG 524
+ GE G G P + GPPG PG AA A G G
Sbjct: 1292 VGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG--AAGAEGRQG 1336
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 46.2 bits (108), Expect = 8e-05
Identities = 45/124 (36%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 415 PTARGLEGRQVVPPPPP-APRPGP--VLGAPGELALAGAAAAYPGK--GAAPYAPPAPSR 469
P A G EG + P P + + GP + G PGE L GA A PG G P PP P
Sbjct: 999 PGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGA-PGLKGGEGPQGPPGPVG 1057
Query: 470 S-------ALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYA-AAAAG 521
S A PI L PG G G A A GP G D + GP AG
Sbjct: 1058 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1117
Query: 522 PLGA 525
P G+
Sbjct: 1118 PAGS 1121
Score = 40.8 bits (94), Expect = 0.004
Identities = 41/132 (31%), Positives = 48/132 (36%), Gaps = 25/132 (18%)
Query: 412 EKAPTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGA----APYAPPAP 467
EK P +G GR V P P P G+PGE G KG+ PP P
Sbjct: 1094 EKGP--QGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGP 1151
Query: 468 SRSALAHPISLMTLPGEAGAAGLAPPGHAAAFG-----------GPPGGLLLDALPGPYA 516
L P+ + G G G P G FG GPPG + L LPGP
Sbjct: 1152 P--GLQGPVGAPGIAGGDGEPG--PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG 1207
Query: 517 AAA----AGPLG 524
GP+G
Sbjct: 1208 EKGENGDVGPMG 1219
Score = 40.0 bits (92), Expect = 0.006
Identities = 40/112 (35%), Positives = 44/112 (39%), Gaps = 19/112 (16%)
Query: 425 VVPPPPPAPRPGPV--------LGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPI 476
VV P P GP+ G PGE L GAA GK A P S P
Sbjct: 968 VVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAA----GKEGAKGDPGPQGISGKDGPA 1023
Query: 477 SLMTLPGEAGAAGL-APPGHAAAFG--GPPGGLLLDALPGPY-AAAAAGPLG 524
L PGE G G PG G GPPG + PG +A AGP+G
Sbjct: 1024 GLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPV---GSPGERGSAGTAGPIG 1072
Score = 35.8 bits (81), Expect = 0.11
Identities = 38/119 (31%), Positives = 42/119 (35%), Gaps = 27/119 (22%)
Query: 418 RGLEGRQVVPPPPPAPRPGPV--------LGAPGELALAG-----AAAAYPG-KG----A 459
RG++G PP P +PG G PGE G PG KG
Sbjct: 564 RGVQG-----PPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGER 618
Query: 460 APYAPPAP----SRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGP 514
P PP P I LPGEAG GL P G PG +D PGP
Sbjct: 619 GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGP 677
Score = 34.3 bits (77), Expect = 0.33
Identities = 50/173 (28%), Positives = 61/173 (35%), Gaps = 40/173 (23%)
Query: 427 PPPPPAPRPGPVLGAPGELALAGAA----AAYPGKGAAPYAPPAPSRSALAHPISLMT-L 481
P PP GP G P E + + AY KG A+ P L+
Sbjct: 393 PTSPPNEEFGP--GVPAETDITETSINGHGAYGEKGQK-------GEPAVVEPGMLVEGP 443
Query: 482 PGEAGAAG-LAPPGHAAAFG--------GPPG--GLL-LDALPGPYAAAAAGPLGAAPDR 529
PG AG AG + PPG G GPPG GL D LPGP G + P R
Sbjct: 444 PGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGP-----PGTMLMLPFR 498
Query: 530 FPADLDLDMFSGSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPP 582
+ D + E ++I+ PP P GL G P P
Sbjct: 499 YGGDGSKGPTISAQEAQAQAIL---------QQARIALRGPPGPMGLTGRPGP 542
Score = 33.9 bits (76), Expect = 0.43
Identities = 51/170 (30%), Positives = 57/170 (33%), Gaps = 64/170 (37%)
Query: 415 PTARGLEGRQ-------------------VVPPPPPAPRPGP-----VLGAPGELALAGA 450
P A G EGRQ V P PA +PGP + G GE L GA
Sbjct: 1365 PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGA 1424
Query: 451 AAAYPGKGAAPYAPPA--------PSRSALAHP--ISLMT------------LPGEAGAA 488
A G P PP S+ HP I L+ LPG G+
Sbjct: 1425 AGQDGPPG--PMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSP 1482
Query: 489 GL----APPGHAAAFG--GPPGGLLLDALPGPYA----AAAAGPLGAAPD 528
G PG A G GPPG LPGP + GP G D
Sbjct: 1483 GAKGDGGIPGPAGPLGPPGPPG------LPGPQGPKGNKGSTGPAGQKGD 1526
Score = 33.1 bits (74), Expect = 0.73
Identities = 35/121 (28%), Positives = 38/121 (31%), Gaps = 22/121 (18%)
Query: 418 RGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPIS 477
RGL G + P P P V G PG G G+ P P L P
Sbjct: 651 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ----GEPGPPGQQGNPGPQGLPGPQG 706
Query: 478 LMTLPGEAGAAGL----------APPGHAAAFG--------GPPGGLLLDALPGPYAAAA 519
+ PGE G G PPGH G GPPG PGP
Sbjct: 707 PIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKG 766
Query: 520 A 520
A
Sbjct: 767 A 767
Score = 33.1 bits (74), Expect = 0.73
Identities = 51/177 (28%), Positives = 57/177 (32%), Gaps = 44/177 (24%)
Query: 427 PPPPPAPR-PGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEA 485
PP PP PR P GA G G+ + G G GE
Sbjct: 1220 PPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEK----------------------GEP 1257
Query: 486 GAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAA----AAGPLG-------AAPDRFPADL 534
G AG P A GGP G GP AA A GP G P FP D
Sbjct: 1258 GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP 1317
Query: 535 DLDMFSGSLECDVESIILNDFMDSDE-MDFNFDSALPPPPPGLAGAP-PPNQSWVPG 589
G D + D+ D + PP P G AG P PP + PG
Sbjct: 1318 GPPGEPGPAG--------QDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1366
Score = 32.3 bits (72), Expect = 1.3
Identities = 106/414 (25%), Positives = 134/414 (32%), Gaps = 80/414 (19%)
Query: 138 KVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRAPSSSFVLRGSP 197
K G G G G R G+PG G + R +G PG R P +G P
Sbjct: 575 KPGKRGRPGADGGR-GMPGEP---GAKGDRGFDGLPGLPGDKGHRGERGP------QGPP 624
Query: 198 APRADGG-----GEVTFPEVATCEVVDLGI-GPQARAFSVPLGASLQGWGTAAGPSPELG 251
P D G GE+ P E G+ GP+ P + G GP +G
Sbjct: 625 GPPGDDGMRGEDGEIG-PRGLPGEAGPRGLLGPRGTP-GAPGQPGMAGVDGPPGPKGNMG 682
Query: 252 SGQGWLPFYPFSTADPSAEDLHMASGPWHHPGHIFCQEEAWTENLNFTPDGRAN--GLPR 309
QG P P +P + L GP PG P G+ GLP
Sbjct: 683 P-QGE-PGPPGQQGNPGPQGLPGPQGPIGPPGEK-------------GPQGKPGLAGLPG 727
Query: 310 ALNQGLQRTRQGKAGKSQLL--PSKARKCQRQGAWGPEESDQCLELGQYLDQEVEATRTG 367
A ++G++G+ L P G G + +D L + E G
Sbjct: 728 ADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLK---GSKGEKGEDG 784
Query: 368 LAKAGSDMGSTGDWHSRIKKRMYGEMAEVFWRVNGDFATHCGDFEKAPTA-------RGL 420
DMG GD GE+ ++ R G+ PT G
Sbjct: 785 FPGFKGDMGLKGD---------RGEVGQIGPR--GEDGPEGPKGRAGPTGDPGPSGQAGE 833
Query: 421 EGRQVVPPPPPAP-RPGP--------VLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSA 471
+G+ VP P P R GP GA GE G A +G P SR A
Sbjct: 834 KGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGA 893
Query: 472 LAHPISLMTLPGEAGAAGL-APPGHAAAFG-----------GPPGGLLLDALPG 513
P G +G G PPG G GPPG D LPG
Sbjct: 894 RG-PTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 946
Score = 32.0 bits (71), Expect = 1.6
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 128 KGDSNSSA-GWKVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRA 186
KGD K G +G G G R GLPGA GL+ G +G P G S
Sbjct: 1008 KGDPGPQGISGKDGPAGLRGFPGER-GLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG 1066
Query: 187 PSSSFVLRGSPAPRADGG 204
+ L G P P+ G
Sbjct: 1067 TAGPIGLPGRPGPQGPPG 1084
Score = 30.4 bits (67), Expect = 4.8
Identities = 43/166 (25%), Positives = 55/166 (33%), Gaps = 24/166 (14%)
Query: 415 PTARGLEGRQVVPPPPPAPRPGPVL----------GAPGELALAGAAAAYPGKG-----A 459
P A G +G PP P P P L G PG + L G KG
Sbjct: 1422 PGAAGQDG----PPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1477
Query: 460 APYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAA 519
+P A + P + PG G G P GP G LPGP +
Sbjct: 1478 TQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGP--PGS 1535
Query: 520 AGPLGAAPDRFP--ADLDLDMFSGSLECDVESIILNDFMDSDEMDF 563
GP G P + + ++ D + IL D+ D E F
Sbjct: 1536 PGPPGEVIQPLPILSSKKTRRHTEGMQADADDNIL-DYSDGMEEIF 1580
Score = 30.0 bits (66), Expect = 6.2
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 418 RGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPIS 477
+G G + PP A P G PG+ G PG P P P A
Sbjct: 1275 KGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGN----PGPVGFPGDPGPPGEPGPAGQDG 1330
Query: 478 LMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLG 524
+ GE G G P + GPPG PG AA A G G
Sbjct: 1331 VGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG--AAGAEGRQG 1375
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,381,065
Number of Sequences: 37866
Number of extensions: 1981270
Number of successful extensions: 18383
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 786
Number of HSP's that attempted gapping in prelim test: 11210
Number of HSP's gapped (non-prelim): 6094
length of query: 589
length of database: 18,247,518
effective HSP length: 108
effective length of query: 481
effective length of database: 14,157,990
effective search space: 6809993190
effective search space used: 6809993190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.