Guide to the Human Genome
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Name: FOXL1 Sequence: fasta or formatted (345aa) NCBI GI: 22779860
Description:

forkhead box L1

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         44           3
 C cysteine            0.6          2           1
 D aspartate           4.6         16           1
 E glutamate           3.2         11           1
 F phenylalanine       3.8         13           1
 G glycine            10.7         37           2
 H histidine           2.0          7           1
 I isoleucine          2.9         10           1
 K lysine              4.1         14           1
 L leucine             9.3         32           2
 M methionine          1.7          6           1
 N asparagine          2.6          9           1
 P proline            13.0         45           2
 Q glutamine           4.9         17           1
 R arginine            6.7         23           3
 S serine              9.0         31           3
 T threonine           2.0          7           1
 V valine              2.3          8           1
 W tryptophan          0.9          3           1
 Y tyrosine            2.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box L1 
FOXC1                 0.241   forkhead box C1 
FOXL2                 0.225   forkhead box L2 
FOXC2                 0.223   forkhead box C2 
FOXE1                 0.213   forkhead box E1 
FOXD3                 0.210   forkhead box D3 
FOXS1                 0.206   forkhead box S1 
FOXD1                 0.204   forkhead box D1 
FOXI1                 0.201   forkhead box I1 isoform a 
FOXD4                 0.200   forkhead box D4 
FOXE3                 0.199   forkhead box E3 
FOXI3                 0.197   forkhead box I3 
FOXD4L3               0.196   forkhead box D4-like 3 
FOXD4L2               0.196   forkhead box D4-like 2 
FOXD4L1               0.196   forkhead box D4-like 1 
FOXD4L5               0.196   forkhead box D4-like 5 
FOXD4L6               0.196   forkhead box D4-like 6 
FOXD4L4               0.196   forkhead box D4-like 4 
FOXI2                 0.194   forkhead box I2 
FOXA1                 0.193   forkhead box A1 
FOXD2                 0.193   forkhead box D2 
FOXF2                 0.190   forkhead box F2 
LOC651986             0.187   PREDICTED: similar to forkhead box L2 
LOC651986             0.187   PREDICTED: similar to forkhead box L2 
LOC651986             0.187   PREDICTED: similar to forkhead box L2 
FOXA2                 0.184   forkhead box A2 isoform 2 
FOXA2                 0.184   forkhead box A2 isoform 1 
FOXB2                 0.182   forkhead box B2 
FOXF1                 0.180   forkhead box F1 
FOXB1                 0.180   forkhead box B1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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