Guide to the Human Genome
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Name: FOXJ3 Sequence: fasta or formatted (622aa) NCBI GI: 50345831
Description:

forkhead box J3

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         28           2
 C cysteine            1.4          9           1
 D aspartate           5.1         32           2
 E glutamate           2.7         17           2
 F phenylalanine       2.1         13           2
 G glycine             4.3         27           1
 H histidine           5.8         36           2
 I isoleucine          3.4         21           2
 K lysine              3.5         22           3
 L leucine             7.9         49           2
 M methionine          2.9         18           2
 N asparagine          5.5         34           2
 P proline             9.2         57           4
 Q glutamine           9.3         58           3
 R arginine            3.2         20           2
 S serine             15.0         93           2
 T threonine           6.1         38           2
 V valine              4.0         25           1
 W tryptophan          1.3          8           1
 Y tyrosine            2.7         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box J3 
FOXJ2                 0.254   forkhead box J2 
FOXC2                 0.086   forkhead box C2 
FOXI1                 0.081   forkhead box I1 isoform a 
FOXG1                 0.078   forkhead box G1 
FOXI3                 0.078   forkhead box I3 
FOXI2                 0.077   forkhead box I2 
FOXJ1                 0.077   forkhead box J1 
FOXA2                 0.074   forkhead box A2 isoform 2 
FOXA2                 0.074   forkhead box A2 isoform 1 
FOXA3                 0.074   forkhead box A3 
FOXK2                 0.073   forkhead box K2 
FOXC1                 0.073   forkhead box C1 
FOXA1                 0.073   forkhead box A1 
FOXF1                 0.072   forkhead box F1 
FOXB1                 0.071   forkhead box B1 
FOXD2                 0.070   forkhead box D2 
FOXD1                 0.070   forkhead box D1 
FOXF2                 0.070   forkhead box F2 
FOXL1                 0.070   forkhead box L1 
FOXK1                 0.070   forkhead box K1 
FOXD3                 0.069   forkhead box D3 
FOXE1                 0.068   forkhead box E1 
FOXB2                 0.066   forkhead box B2 
FOXD4L1               0.065   forkhead box D4-like 1 
FOXS1                 0.065   forkhead box S1 
FOXN2                 0.065   T-cell leukemia virus enhancer factor 
FOXD4L3               0.064   forkhead box D4-like 3 
FOXI1                 0.064   forkhead box I1 isoform b 
FOXD4L2               0.064   forkhead box D4-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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