Guide to the Human Genome
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Name: FOXA3 Sequence: fasta or formatted (350aa) NCBI GI: 24497506
Description:

forkhead box A3

Referenced in:

FOX Family
Liver

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         30           2
 C cysteine            0.9          3           1
 D aspartate           2.3          8           1
 E glutamate           5.1         18           2
 F phenylalanine       2.9         10           1
 G glycine            11.4         40           2
 H histidine           1.7          6           1
 I isoleucine          2.0          7           1
 K lysine              4.3         15           2
 L leucine             8.6         30           2
 M methionine          2.9         10           1
 N asparagine          3.7         13           2
 P proline            13.7         48           4
 Q glutamine           3.1         11           2
 R arginine            3.1         11           2
 S serine             10.0         35           4
 T threonine           5.1         18           3
 V valine              3.7         13           1
 W tryptophan          1.1          4           1
 Y tyrosine            5.7         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box A3 
FOXA2                 0.360   forkhead box A2 isoform 2 
FOXA2                 0.360   forkhead box A2 isoform 1 
FOXA1                 0.354   forkhead box A1 
FOXD1                 0.227   forkhead box D1 
FOXB1                 0.213   forkhead box B1 
FOXE3                 0.203   forkhead box E3 
FOXB2                 0.203   forkhead box B2 
FOXC1                 0.200   forkhead box C1 
FOXC2                 0.190   forkhead box C2 
FOXD2                 0.189   forkhead box D2 
FOXE1                 0.183   forkhead box E1 
FOXD3                 0.182   forkhead box D3 
FOXI3                 0.175   forkhead box I3 
FOXL1                 0.172   forkhead box L1 
FOXS1                 0.169   forkhead box S1 
FOXF2                 0.166   forkhead box F2 
FOXI2                 0.166   forkhead box I2 
FOXD4L1               0.164   forkhead box D4-like 1 
FOXD4                 0.164   forkhead box D4 
FOXD4L3               0.164   forkhead box D4-like 3 
FOXD4L2               0.164   forkhead box D4-like 2 
FOXD4L5               0.164   forkhead box D4-like 5 
FOXD4L6               0.164   forkhead box D4-like 6 
FOXD4L4               0.164   forkhead box D4-like 4 
FOXG1                 0.162   forkhead box G1 
FOXF1                 0.151   forkhead box F1 
FOXI1                 0.151   forkhead box I1 isoform a 
FOXQ1                 0.142   forkhead box Q1 
FOXJ1                 0.141   forkhead box J1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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