Guide to the Human Genome
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Name: LOC100131908 Sequence: fasta or formatted (562aa) NCBI GI: 239752748
Description:

PREDICTED: similar to forkhead box O6

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         72           3
 C cysteine            1.1          6           1
 D aspartate           5.7         32           2
 E glutamate           5.0         28           3
 F phenylalanine       2.1         12           1
 G glycine            10.3         58           4
 H histidine           2.1         12           2
 I isoleucine          2.1         12           2
 K lysine              4.3         24           3
 L leucine             8.9         50           2
 M methionine          1.8         10           1
 N asparagine          2.3         13           1
 P proline            11.0         62           5
 Q glutamine           3.9         22           2
 R arginine            6.9         39           3
 S serine              8.0         45           2
 T threonine           2.8         16           1
 V valine              3.2         18           1
 W tryptophan          3.0         17           2
 Y tyrosine            2.5         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to forkhead box O6 
FOXO6                 0.566   PREDICTED: forkhead box protein O6 
FOXO3                 0.243   forkhead box O3A 
FOXO3                 0.243   forkhead box O3A 
FOXO6                 0.221   PREDICTED: forkhead box protein O6 
FOXO1                 0.216   forkhead box O1 
FOXO4                 0.212   forkhead box O4 
FOXA1                 0.059   forkhead box A1 
FOXG1                 0.058   forkhead box G1 
FOXI2                 0.056   forkhead box I2 
FOXD3                 0.056   forkhead box D3 
FOXE3                 0.055   forkhead box E3 
FOXI3                 0.054   forkhead box I3 
FOXC1                 0.054   forkhead box C1 
FOXL1                 0.053   forkhead box L1 
FOXQ1                 0.053   forkhead box Q1 
FOXD2                 0.051   forkhead box D2 
FOXJ3                 0.051   forkhead box J3 
FOXC2                 0.050   forkhead box C2 
FOXL2                 0.048   forkhead box L2 
FOXP4                 0.048   forkhead box P4 isoform 2 
FOXA2                 0.047   forkhead box A2 isoform 2 
FOXI1                 0.047   forkhead box I1 isoform a 
FOXA2                 0.047   forkhead box A2 isoform 1 
FOXD1                 0.047   forkhead box D1 
FOXP4                 0.047   forkhead box P4 isoform 3 
FOXP4                 0.047   forkhead box P4 isoform 1 
FOXS1                 0.045   forkhead box S1 
FOXA3                 0.044   forkhead box A3 
FOXJ2                 0.044   forkhead box J2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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