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Search of human proteins with 239747300
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
(470 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 966 0.0
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 966 0.0
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 480 e-135
gi|19924099 synapsin I isoform Ia [Homo sapiens] 55 1e-07
gi|19924097 synapsin I isoform Ib [Homo sapiens] 55 1e-07
gi|118402590 myosin XV [Homo sapiens] 53 7e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 52 1e-06
gi|169194607 PREDICTED: hypothetical protein [Homo sapiens] 52 2e-06
gi|169201944 PREDICTED: hypothetical protein [Homo sapiens] 52 2e-06
gi|169192119 PREDICTED: hypothetical protein [Homo sapiens] 52 2e-06
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 50 4e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 47 3e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 47 3e-05
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-05
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-05
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 46 6e-05
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 46 6e-05
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 46 6e-05
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 45 2e-04
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 45 2e-04
gi|23510413 sorting nexin 26 [Homo sapiens] 45 2e-04
gi|239757110 PREDICTED: hypothetical protein [Homo sapiens] 44 3e-04
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 44 3e-04
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 44 3e-04
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 44 4e-04
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 44 4e-04
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 44 4e-04
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 966 bits (2498), Expect = 0.0
Identities = 470/470 (100%), Positives = 470/470 (100%)
Query: 1 MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR 60
MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR
Sbjct: 1 MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR 60
Query: 61 LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR 120
LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR
Sbjct: 61 LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR 120
Query: 121 RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG
Sbjct: 121 RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
Query: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPE 240
LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPE
Sbjct: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPE 240
Query: 241 NEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGA 300
NEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGA
Sbjct: 241 NEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGA 300
Query: 301 ARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGGSERQNSKRI 360
ARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGGSERQNSKRI
Sbjct: 301 ARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGGSERQNSKRI 360
Query: 361 VYAGPGELRELVEVGEPKSDPLLWEAGLDRAQVLGLRRRKTAHALDAAPPPAGTRAGTIS 420
VYAGPGELRELVEVGEPKSDPLLWEAGLDRAQVLGLRRRKTAHALDAAPPPAGTRAGTIS
Sbjct: 361 VYAGPGELRELVEVGEPKSDPLLWEAGLDRAQVLGLRRRKTAHALDAAPPPAGTRAGTIS 420
Query: 421 SRISSGHWEPPILAFRIVGKQVYPPARPRLPAPPRGSQRRIYEASKPHSD 470
SRISSGHWEPPILAFRIVGKQVYPPARPRLPAPPRGSQRRIYEASKPHSD
Sbjct: 421 SRISSGHWEPPILAFRIVGKQVYPPARPRLPAPPRGSQRRIYEASKPHSD 470
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 966 bits (2498), Expect = 0.0
Identities = 470/470 (100%), Positives = 470/470 (100%)
Query: 1 MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR 60
MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR
Sbjct: 1 MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR 60
Query: 61 LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR 120
LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR
Sbjct: 61 LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR 120
Query: 121 RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG
Sbjct: 121 RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
Query: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPE 240
LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPE
Sbjct: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPE 240
Query: 241 NEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGA 300
NEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGA
Sbjct: 241 NEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGA 300
Query: 301 ARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGGSERQNSKRI 360
ARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGGSERQNSKRI
Sbjct: 301 ARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGGSERQNSKRI 360
Query: 361 VYAGPGELRELVEVGEPKSDPLLWEAGLDRAQVLGLRRRKTAHALDAAPPPAGTRAGTIS 420
VYAGPGELRELVEVGEPKSDPLLWEAGLDRAQVLGLRRRKTAHALDAAPPPAGTRAGTIS
Sbjct: 361 VYAGPGELRELVEVGEPKSDPLLWEAGLDRAQVLGLRRRKTAHALDAAPPPAGTRAGTIS 420
Query: 421 SRISSGHWEPPILAFRIVGKQVYPPARPRLPAPPRGSQRRIYEASKPHSD 470
SRISSGHWEPPILAFRIVGKQVYPPARPRLPAPPRGSQRRIYEASKPHSD
Sbjct: 421 SRISSGHWEPPILAFRIVGKQVYPPARPRLPAPPRGSQRRIYEASKPHSD 470
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 480 bits (1235), Expect = e-135
Identities = 261/367 (71%), Positives = 264/367 (71%), Gaps = 47/367 (12%)
Query: 1 MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR 60
MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR
Sbjct: 1 MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR 60
Query: 61 LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR 120
LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR
Sbjct: 61 LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR 120
Query: 121 RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG
Sbjct: 121 RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
Query: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHAR------------------------- 215
LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHAR
Sbjct: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPS 240
Query: 216 AHSRAHT----------------CAGGGEGDPGPIVGGRPENEDSPRFPDVPTRPAGPSP 259
AHS AHT GGGEGDPGPIVGGRPENEDS P P P P
Sbjct: 241 AHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVP 300
Query: 260 FYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPGAR-RLRSLASRLPRG 318
PG AR G A +R T AR R R ++ PRG
Sbjct: 301 STARARSPG-----ARRGARELAPRAGRRRQPSGRTSWRRRARREQRDREPAVCGAWPRG 355
Query: 319 GRWLDGG 325
G
Sbjct: 356 SHAAGAG 362
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 55.1 bits (131), Expect = 1e-07
Identities = 82/295 (27%), Positives = 102/295 (34%), Gaps = 79/295 (26%)
Query: 73 RRRACPGRGRGG---LPGAAALGAGAQQPRRRRLAQ--PPGSRAPLQVGGAPRRRAHLTG 127
+R A PGRG G PGA LG Q AQ PP P Q G P+R+ G
Sbjct: 423 QRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQ----G 478
Query: 128 GPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCT 187
P ++RPP H GL P A + LP+ LP +A
Sbjct: 479 PPLQQRPPPQGQQH------LSGLGPP----------AGSPLPQRLPSPTSA-------- 514
Query: 188 RLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDP---GPIVGGRPENEDS 244
+P PP G P GG G P P P+ +
Sbjct: 515 PQQPASQAAPPTQGQGRQSRP---------------VAGGPGAPPAARPPASPSPQRQAG 559
Query: 245 PRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPG 304
P T +GP+P G PG Q Q P Q +PPG A G
Sbjct: 560 PPQATRQTSVSGPAPPKASGAPPGGQ--------------QRQGPPQ----KPPGPA--G 599
Query: 305 ARRLRSLASRLPRGG-------RWLDGGGSGRLTREPASLPN-PIPPGSRVGAGG 351
R S A +PR G R G +GR + A P+ +PP + AGG
Sbjct: 600 PTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGG 654
Score = 37.0 bits (84), Expect = 0.039
Identities = 50/181 (27%), Positives = 62/181 (34%), Gaps = 38/181 (20%)
Query: 19 LGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACP 78
LGP A S +P RLP P + Q A +P Q R R P
Sbjct: 496 LGPPAGSPLPQRLP------SPTSAPQQPASQAAPPTQGQGRQSR--------------P 535
Query: 79 GRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGG--APRRRAHLTGGPPRRRPPR 136
G G P AA A P +R A PP + V G P+ GG R+ PP+
Sbjct: 536 VAGGPGAPPAARPPA---SPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ 592
Query: 137 LAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQP 196
P P + A R + + PR P PA R +P L Q
Sbjct: 593 KP-----PGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAG--------RPKPQLAQK 639
Query: 197 P 197
P
Sbjct: 640 P 640
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 55.1 bits (131), Expect = 1e-07
Identities = 82/295 (27%), Positives = 102/295 (34%), Gaps = 79/295 (26%)
Query: 73 RRRACPGRGRGG---LPGAAALGAGAQQPRRRRLAQ--PPGSRAPLQVGGAPRRRAHLTG 127
+R A PGRG G PGA LG Q AQ PP P Q G P+R+ G
Sbjct: 423 QRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQ----G 478
Query: 128 GPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCT 187
P ++RPP H GL P A + LP+ LP +A
Sbjct: 479 PPLQQRPPPQGQQH------LSGLGPP----------AGSPLPQRLPSPTSA-------- 514
Query: 188 RLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDP---GPIVGGRPENEDS 244
+P PP G P GG G P P P+ +
Sbjct: 515 PQQPASQAAPPTQGQGRQSRP---------------VAGGPGAPPAARPPASPSPQRQAG 559
Query: 245 PRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPG 304
P T +GP+P G PG Q Q P Q +PPG A G
Sbjct: 560 PPQATRQTSVSGPAPPKASGAPPGGQ--------------QRQGPPQ----KPPGPA--G 599
Query: 305 ARRLRSLASRLPRGG-------RWLDGGGSGRLTREPASLPN-PIPPGSRVGAGG 351
R S A +PR G R G +GR + A P+ +PP + AGG
Sbjct: 600 PTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGG 654
Score = 37.0 bits (84), Expect = 0.039
Identities = 50/181 (27%), Positives = 62/181 (34%), Gaps = 38/181 (20%)
Query: 19 LGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACP 78
LGP A S +P RLP P + Q A +P Q R R P
Sbjct: 496 LGPPAGSPLPQRLP------SPTSAPQQPASQAAPPTQGQGRQSR--------------P 535
Query: 79 GRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGG--APRRRAHLTGGPPRRRPPR 136
G G P AA A P +R A PP + V G P+ GG R+ PP+
Sbjct: 536 VAGGPGAPPAARPPA---SPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ 592
Query: 137 LAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQP 196
P P + A R + + PR P PA R +P L Q
Sbjct: 593 KP-----PGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAG--------RPKPQLAQK 639
Query: 197 P 197
P
Sbjct: 640 P 640
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 52.8 bits (125), Expect = 7e-07
Identities = 96/355 (27%), Positives = 116/355 (32%), Gaps = 63/355 (17%)
Query: 39 IPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQP 98
I R G QKA PA +R G + G PG + QP
Sbjct: 586 IARLRGSQKARAGGPAVREAAY---KRFGYKLAGMDPEKPG---------TPIVLRRAQP 633
Query: 99 RRRRLAQPPGSRAPLQVGGAPRRRAH---LTGGPPRRRPPRLAAAHGLPASEA-PGL-RP 153
R R +R P APR +H L P RPP P S A GL RP
Sbjct: 634 RAR---SSNDARRPPAPQPAPRTLSHWSALLSPPVPPRPPSSGPPPAPPLSPALSGLPRP 690
Query: 154 DSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPP---PMLSPGLAQSPGV 210
S LR P +PPAP A W ++PP P + P L PG
Sbjct: 691 ASPYGSLRRHPPPWAAPAHVPPAPQASWWA---------FVEPPAVSPEVPPDLLAFPGP 741
Query: 211 ELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDVPTRPAGPSPFYCEGTEPGSQ 270
R R G G PG SP P+ + P YC P S
Sbjct: 742 RPSFRGSRRR----GAAFGFPGASPRASRRRAWSPLASPQPSLRSSPGLGYCSPLAPPSP 797
Query: 271 AWSARAGTASWE-TAAAQRPDQLEET----------RPPGAARPGARRLRS--------- 310
S R G A+RP L+E+ PPG+ PG+ R S
Sbjct: 798 QLSLRTGPFQPPFLPPARRPRSLQESPAPRRAAGRLGPPGSPLPGSPRPPSPPLGLCHSP 857
Query: 311 ------LASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGGSERQNSKR 359
L SRLP R L + R + LP PP + E + S R
Sbjct: 858 RRSSLNLPSRLPHTWRRLSEPPT-RAVKPQVRLPFHRPPRAGAWRAPLEHRESPR 911
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 52.0 bits (123), Expect = 1e-06
Identities = 103/408 (25%), Positives = 133/408 (32%), Gaps = 101/408 (24%)
Query: 78 PG-RGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPR 136
PG +G GLPG P PG + GAP + G P R PP
Sbjct: 635 PGPQGLQGLPGTGG------PPGENGKPGEPGPKGDAGAPGAPGGKGD-AGAPGERGPPG 687
Query: 137 LAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQP 196
LA A PGLR + PP P G AG
Sbjct: 688 LAGA--------PGLRGGAG-----------------PPGPEGGKGAAG----------- 711
Query: 197 PPMLSPGLAQSPGVE-LHARAHSRAHTCAGGGEGDPG-PIVGGRPENEDSPRFPDVPTRP 254
P PG A +PG++ + G +G+PG P G P +D PR P P P
Sbjct: 712 -PPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVP-GKDGPRGPTGPIGP 769
Query: 255 AGPSPFYCEGTE---------------PGSQAWSARAGTASWETAAAQR----------- 288
GP+ + E PG + + G A + A Q
Sbjct: 770 PGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGA 829
Query: 289 PDQLEETRPPGAARP--GARRLRSLASRLPRGGRWLDGG-------GSGRLTREPASLPN 339
P + E PPG A P G+ + +G R GG G+ L P S N
Sbjct: 830 PGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGN 889
Query: 340 PIPPG--------------SRVGAGGSERQNSKRIVYAGPGELRELVEVGEPKSDPLLWE 385
P PPG GA GS + + PGE G P + L
Sbjct: 890 PGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGI 949
Query: 386 AGLDRAQVLGLRRRKTAHALDAAPPPAGTR--AGTISSRISSGHWEPP 431
AG+ A+ GL +P P G + +G + SG PP
Sbjct: 950 AGITGAR--GLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPP 995
Score = 46.6 bits (109), Expect = 5e-05
Identities = 89/332 (26%), Positives = 109/332 (32%), Gaps = 78/332 (23%)
Query: 78 PGR-GRGGLPGAAA-LGA-------------GAQQPRRRRLAQPPGSRAPLQVGGAPRRR 122
PG G GLPGAA GA G + P R A PG P G P R
Sbjct: 470 PGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGA--PGPAGPRGAAGEPGRD 527
Query: 123 AHLTGGPPRRRPPRLAAAHGLPASEA----PGLRPDSARTRLRLRLASARLPRGLPPAPA 178
+ GGP R P + G P S+ PG + +S R PP P+
Sbjct: 528 G-VPGGPGMRGMP---GSPGGPGSDGKPGPPGSQGESGRPG--------------PPGPS 569
Query: 179 AGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGR 238
P PG+ PG + + A + GG G PGP
Sbjct: 570 G------------------PRGQPGVMGFPGPKGNDGAPGK--NGERGGPGGPGPQGPPG 609
Query: 239 PENEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTAS--WETAAAQRPDQLEETR 296
E P+ P PT P G + PG Q GT E P +
Sbjct: 610 KNGETGPQGPPGPTGPGGDKG---DTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAG 666
Query: 297 PPG-------AARPGARRLRSLASRLP-RGGRWLDGGGSGRLTREPASLPNPIPPGSRVG 348
PG A PG R LA RGG G G+ P P PPG+ G
Sbjct: 667 APGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGP-----PGPPGA-AG 720
Query: 349 AGGSERQNSKRIVYAGPGELRELVEVGEPKSD 380
G + +R PG + E G P +D
Sbjct: 721 TPGLQGMPGERGGLGSPGPKGDKGEPGGPGAD 752
Score = 42.4 bits (98), Expect = 0.001
Identities = 79/281 (28%), Positives = 99/281 (35%), Gaps = 25/281 (8%)
Query: 81 GRGGLPGAAALGAGAQQPRRRRL--AQ-PPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRL 137
G G PG + A QP + AQ PPG+ PL + G +TG PP +
Sbjct: 912 GAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAG-------ITGARGLAGPPGM 964
Query: 138 AAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPP 197
G P + G++ +S + L+ R P G P GL AG P
Sbjct: 965 PGPRGSPGPQ--GVKGESGKPGAN-GLSGERGPPG--PQGLPGL--AGTAGEPGRDGNPG 1017
Query: 198 PMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDVPTRPAG- 256
PG SPG + A G G PGP P + R P PAG
Sbjct: 1018 SDGLPGRDGSPGGK--GDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGA 1075
Query: 257 PSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPG-ARRLRSLASRL 315
P P G PG Q G AA + + P PG A + ++ S
Sbjct: 1076 PGPAGSRGA-PGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPG 1134
Query: 316 PRGGRWLDGGGSGRLTREPASLPNPI-PPGSRVGAG--GSE 353
P G R G + P PI PPG R G GSE
Sbjct: 1135 PAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSE 1175
Score = 40.4 bits (93), Expect = 0.003
Identities = 69/244 (28%), Positives = 79/244 (32%), Gaps = 34/244 (13%)
Query: 81 GRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAH-----LTGGPPRRRPP 135
G G PG +P R L PPG + P + G P + H G P
Sbjct: 231 GESGRPG---------RPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAP 281
Query: 136 RLAAAHGLPASE-APGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLL 194
L +GLP APG P R A RG P P A R G R
Sbjct: 282 GLKGENGLPGENGAPG--PMGPR--------GAPGERGRPGLPGAAGAR-GNDGARGSDG 330
Query: 195 QPPPMLSPGLA---QSPGVELH-ARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDV 250
QP P PG A SPG + A S A G G+PGP G + P P +
Sbjct: 331 QPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGP--QGHAGAQGPPGPPGI 388
Query: 251 PTRPAGPSPFYCEGT--EPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPGARRL 308
P G G PG G A A R E + PG R
Sbjct: 389 NGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGE 448
Query: 309 RSLA 312
R A
Sbjct: 449 RGEA 452
Score = 40.4 bits (93), Expect = 0.003
Identities = 78/295 (26%), Positives = 101/295 (34%), Gaps = 42/295 (14%)
Query: 70 IVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGP 129
+ G R + G G G PGA R L PPGS G +G P
Sbjct: 859 VKGERGSPGGPGAAGFPGA------------RGLPGPPGSNGNPGPPGP-------SGSP 899
Query: 130 PRRRPPRLAAAHGLPASE-APGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTR 188
+ PP A G P S G + D+ + + + +G P AP L AG T
Sbjct: 900 GKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEK----GSPGAQGPPGAPGP-LGIAGITG 954
Query: 189 LRPLLLQPPPMLSPGLAQSPGVE-LHARAHSRAHTCAGGGEGDPGPI-------VGGRPE 240
R L PP M PG SPG + + + G G PGP G P
Sbjct: 955 ARG-LAGPPGM--PGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPG 1011
Query: 241 NEDSPRFPDVPTRPAGPSPFYCEGT--EPGSQAWSARAGTASWETAAAQRPDQLEE--TR 296
+ +P +P R P G PG+ G A + D+ E
Sbjct: 1012 RDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAG 1071
Query: 297 PPGAARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLP-NPIPPGSRVGAG 350
P GA P R + + PRG + G + P NP PGS AG
Sbjct: 1072 PAGAPGPAGSR-GAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAG 1125
Score = 36.2 bits (82), Expect = 0.066
Identities = 83/323 (25%), Positives = 112/323 (34%), Gaps = 53/323 (16%)
Query: 46 QKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQ 105
+K T +P + L +G R A RGR GLPGAA GA R Q
Sbjct: 274 EKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAA--GARGNDGARGSDGQ 331
Query: 106 PPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLA 165
PG P G P G P + A + G ++ APG R + A
Sbjct: 332 -PGPPGPPGTAGFP-------GSPGAKGEVGPAGSPG--SNGAPGQRGEPGPQ----GHA 377
Query: 166 SARLPRGLP-----PAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRA 220
A+ P G P P + AG L+ P G +PG+ A +
Sbjct: 378 GAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGK- 436
Query: 221 HTCAGGGEGDPGPIVGGRPENEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTAS 280
G +G+PGP R E ++ +P P +G+ PG + G A
Sbjct: 437 ----NGAKGEPGP----RGERGEA----GIPGVPGAKGEDGKDGS-PGEPGANGLPGAAG 483
Query: 281 WETAAAQR----PDQLEETRPPGAAR--PGARRLRSLASRLPRGG-------RWLDGGGS 327
A R P+ + + P R PG R A R G R + G
Sbjct: 484 ERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPG 543
Query: 328 GRLTREPASLPNPIPPGSRVGAG 350
G P S P PPGS+ +G
Sbjct: 544 G-----PGSDGKPGPPGSQGESG 561
>gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 51.6 bits (122), Expect = 2e-06
Identities = 86/304 (28%), Positives = 110/304 (36%), Gaps = 54/304 (17%)
Query: 21 PSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGR 80
PS +K P IP G + + +R ++RL RR +I
Sbjct: 120 PSPRAKAHAHAPTHSLLSIP---GAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFL---- 172
Query: 81 GRGGLPGAAALGA------GAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRP 134
GG+ +A GA G++ RRRRL APR R + PRR P
Sbjct: 173 --GGIHDFSATGALGVHDRGSRGRRRRRLL-------------APRSRCDI----PRRAP 213
Query: 135 PRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCT--RLRPL 192
RL A + G R S R R + AR R L P P RAG T R R
Sbjct: 214 HRLLAGG---RAAGGGRRVGSRR---RATVTRARPSRSLAPPPRRRR-RAGQTHRRARTE 266
Query: 193 LLQPPPMLSPG----LAQSPGVELHARAHSRAHTCAGGGEG-DPGPIVGGRPEN-EDSPR 246
+ + PG + G + + A R CA G P P+ G P PR
Sbjct: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR 326
Query: 247 FPDVP-------TRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPG 299
DVP R G + +PG+ A S RA S + A RP E PG
Sbjct: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
Query: 300 AARP 303
RP
Sbjct: 387 DLRP 390
Score = 30.4 bits (67), Expect = 3.6
Identities = 56/199 (28%), Positives = 69/199 (34%), Gaps = 34/199 (17%)
Query: 19 LGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR---------LRRRRQGAV 69
L P + IP R P R+ G G ++ +R A ++ R RRRR G
Sbjct: 200 LAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQT 259
Query: 70 IVGRRRACPGR---GRGGLPGAAALGAG--AQQPRRRR----------LAQPPGSRAPLQ 114
R G G G GAA GAG + RR LA P PLQ
Sbjct: 260 HRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPP-----PLQ 314
Query: 115 VGGAPRRRAH--LTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRG 172
G R H LT P + R G P+ ++P +A R SA R
Sbjct: 315 AGEPSRGHPHPRLT-DVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSA--ARS 371
Query: 173 LPPAPAAGLWRAGCTRLRP 191
P P R LRP
Sbjct: 372 DAPRPKGREIRGEPGDLRP 390
>gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 51.6 bits (122), Expect = 2e-06
Identities = 86/304 (28%), Positives = 110/304 (36%), Gaps = 54/304 (17%)
Query: 21 PSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGR 80
PS +K P IP G + + +R ++RL RR +I
Sbjct: 120 PSPRAKAHAHAPTHSLLSIP---GAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFL---- 172
Query: 81 GRGGLPGAAALGA------GAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRP 134
GG+ +A GA G++ RRRRL APR R + PRR P
Sbjct: 173 --GGIHDFSATGALGVHDRGSRGRRRRRLL-------------APRSRCDI----PRRAP 213
Query: 135 PRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCT--RLRPL 192
RL A + G R S R R + AR R L P P RAG T R R
Sbjct: 214 HRLLAGG---RAAGGGRRVGSRR---RATVTRARPSRSLAPPPRRRR-RAGQTHRRARTE 266
Query: 193 LLQPPPMLSPG----LAQSPGVELHARAHSRAHTCAGGGEG-DPGPIVGGRPEN-EDSPR 246
+ + PG + G + + A R CA G P P+ G P PR
Sbjct: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR 326
Query: 247 FPDVP-------TRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPG 299
DVP R G + +PG+ A S RA S + A RP E PG
Sbjct: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
Query: 300 AARP 303
RP
Sbjct: 387 DLRP 390
Score = 30.4 bits (67), Expect = 3.6
Identities = 56/199 (28%), Positives = 69/199 (34%), Gaps = 34/199 (17%)
Query: 19 LGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR---------LRRRRQGAV 69
L P + IP R P R+ G G ++ +R A ++ R RRRR G
Sbjct: 200 LAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQT 259
Query: 70 IVGRRRACPGR---GRGGLPGAAALGAG--AQQPRRRR----------LAQPPGSRAPLQ 114
R G G G GAA GAG + RR LA P PLQ
Sbjct: 260 HRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPP-----PLQ 314
Query: 115 VGGAPRRRAH--LTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRG 172
G R H LT P + R G P+ ++P +A R SA R
Sbjct: 315 AGEPSRGHPHPRLT-DVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSA--ARS 371
Query: 173 LPPAPAAGLWRAGCTRLRP 191
P P R LRP
Sbjct: 372 DAPRPKGREIRGEPGDLRP 390
>gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 51.6 bits (122), Expect = 2e-06
Identities = 86/304 (28%), Positives = 110/304 (36%), Gaps = 54/304 (17%)
Query: 21 PSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGR 80
PS +K P IP G + + +R ++RL RR +I
Sbjct: 120 PSPRAKAHAHAPTHSLLSIP---GAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFL---- 172
Query: 81 GRGGLPGAAALGA------GAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRP 134
GG+ +A GA G++ RRRRL APR R + PRR P
Sbjct: 173 --GGIHDFSATGALGVHDRGSRGRRRRRLL-------------APRSRCDI----PRRAP 213
Query: 135 PRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCT--RLRPL 192
RL A + G R S R R + AR R L P P RAG T R R
Sbjct: 214 HRLLAGG---RAAGGGRRVGSRR---RATVTRARPSRSLAPPPRRRR-RAGQTHRRARTE 266
Query: 193 LLQPPPMLSPG----LAQSPGVELHARAHSRAHTCAGGGEG-DPGPIVGGRPEN-EDSPR 246
+ + PG + G + + A R CA G P P+ G P PR
Sbjct: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR 326
Query: 247 FPDVP-------TRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPG 299
DVP R G + +PG+ A S RA S + A RP E PG
Sbjct: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
Query: 300 AARP 303
RP
Sbjct: 387 DLRP 390
Score = 30.4 bits (67), Expect = 3.6
Identities = 56/199 (28%), Positives = 69/199 (34%), Gaps = 34/199 (17%)
Query: 19 LGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR---------LRRRRQGAV 69
L P + IP R P R+ G G ++ +R A ++ R RRRR G
Sbjct: 200 LAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQT 259
Query: 70 IVGRRRACPGR---GRGGLPGAAALGAG--AQQPRRRR----------LAQPPGSRAPLQ 114
R G G G GAA GAG + RR LA P PLQ
Sbjct: 260 HRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPP-----PLQ 314
Query: 115 VGGAPRRRAH--LTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRG 172
G R H LT P + R G P+ ++P +A R SA R
Sbjct: 315 AGEPSRGHPHPRLT-DVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSA--ARS 371
Query: 173 LPPAPAAGLWRAGCTRLRP 191
P P R LRP
Sbjct: 372 DAPRPKGREIRGEPGDLRP 390
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 50.1 bits (118), Expect = 4e-06
Identities = 51/166 (30%), Positives = 61/166 (36%), Gaps = 34/166 (20%)
Query: 129 PPRRRPPRLAAAHG-LPASEAPGLRPDSARTRLR-LRLASARLPRGLPPAPAAGLWRAGC 186
PP PP++ +A L + A P AR + L L S RL R PP PA G
Sbjct: 715 PPPPPPPQVTSAIATLQQAAAMSFCPQVARPLVGPLALGSPRLVRRPPPGPAPAAASPG- 773
Query: 187 TRLRPLLLQPPPMLSPGLAQSP-----------------GVELHARAHSRAHTCAGGGE- 228
PPP PG SP G L AR SRA +
Sbjct: 774 --------PPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPLSASQP 825
Query: 229 ----GDPGPIVGGRPENEDSPRFPDVP-TRPAGPSPFYCEGTEPGS 269
G PGP RP + +PR P R A PSP + PG+
Sbjct: 826 SLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSASPGA 871
Score = 32.7 bits (73), Expect = 0.73
Identities = 29/98 (29%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Query: 224 AGGGEGDPGPIVGGRPENEDSPRFPDVPTR---PAGPSPFYCEGTEPGSQAWSARAGTAS 280
A GG G PG G P P P P + P P P G P RA
Sbjct: 3 ARGGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALP 62
Query: 281 WETAAAQRPDQLEETRPPGAARPGARRLRSLASRLPRG 318
E A P +R RPG S A P G
Sbjct: 63 PEAADEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNG 100
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 47.4 bits (111), Expect = 3e-05
Identities = 86/301 (28%), Positives = 101/301 (33%), Gaps = 54/301 (17%)
Query: 78 PGR-GRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPL-----QVGGAPRRRAHLTG--GP 129
PG+ G GLPGA L + A PPG P Q P L G GP
Sbjct: 614 PGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP 673
Query: 130 PRR--RP-----PRLAAAHGL--PASEA--PGLRPDSARTRLRLRLASARLPRGLPPAPA 178
P +P P A A GL P E PG R L + PRGLP P
Sbjct: 674 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGL-------QGPRGLPGTPG 726
Query: 179 AGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGR 238
+ P Q P PGL PG R G +GD G +
Sbjct: 727 TDGPKGASGPAGPPGAQGP----PGLQGMPG--------ERGAAGIAGPKGDRGDVGEKG 774
Query: 239 PE---NEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEET 295
PE +D R P P GP+ E E G + AG A P + ET
Sbjct: 775 PEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAG-------ARGAPGERGET 827
Query: 296 RPPG----AARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGG 351
PPG A PGA G+ D G G + P+ P P P G G
Sbjct: 828 GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG--PQGPSGAPGPQGPTGVTGPKG 885
Query: 352 S 352
+
Sbjct: 886 A 886
Score = 42.0 bits (97), Expect = 0.001
Identities = 77/323 (23%), Positives = 93/323 (28%), Gaps = 49/323 (15%)
Query: 81 GRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAP--RRRAHLTGGPPRRRPPRLA 138
G G PG +P ++ P G R P G P A G R PP
Sbjct: 213 GPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 272
Query: 139 AAHGLPASE----------------------APGLRPDSARTRLRLRLASARLPRGLPPA 176
A G P + APG++ +S PRGL P
Sbjct: 273 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPG-ENGSPGPMGPRGL-PG 330
Query: 177 PAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVG 236
AG R QP P PG G A G +G+ GP
Sbjct: 331 ERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAG--------GPGFPGAPGAKGEAGPTGA 382
Query: 237 GRPENEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWE--TAAAQRPDQLEE 294
PE PR P P P P G PG+ G+A A P
Sbjct: 383 RGPEGAQGPR--GEPGTPGSPGPAGASG-NPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP 439
Query: 295 TRPPGAARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGGSER 354
P GA P P+G G + + P P P P G G E
Sbjct: 440 PGPQGATGPLG----------PKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEG 489
Query: 355 QNSKRIVYAGPGELRELVEVGEP 377
+ R G G + E G P
Sbjct: 490 KRGARGEPGGVGPIGPPGERGAP 512
Score = 32.3 bits (72), Expect = 0.95
Identities = 69/246 (28%), Positives = 83/246 (33%), Gaps = 33/246 (13%)
Query: 78 PG-RGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPR 136
PG RG G PG L + +P ++ G R P G P G P R P
Sbjct: 986 PGQRGERGFPG---LPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGP-AGEPGREGSP- 1040
Query: 137 LAAAHGLPASE-APGLRPDSARTRLRLRLASARLPRGLP-PAPAAG-------------L 181
A G P + A G++ D T + A P G P PA G +
Sbjct: 1041 --GADGPPGRDGAAGVKGDRGETGA-VGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1097
Query: 182 WRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPEN 241
+G R + P G A PG E + H R T G G PGP +
Sbjct: 1098 GPSGPAGARGIQGPQGPRGDKGEAGEPG-ERGLKGH-RGFTGLQGLPGPPGP---SGDQG 1152
Query: 242 EDSPRFPDVPTRPAGP-SPFYCEGTE--PGSQAWSARAGTASWETAAAQRPDQLEETRPP 298
P P P P GP P +G PG G S ET A P PP
Sbjct: 1153 ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRG-RSGETGPAGPPGNPGPPGPP 1211
Query: 299 GAARPG 304
G PG
Sbjct: 1212 GPPGPG 1217
Score = 31.6 bits (70), Expect = 1.6
Identities = 79/316 (25%), Positives = 102/316 (32%), Gaps = 43/316 (13%)
Query: 78 PGRGRG-GLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPR 136
PG+ G GL G A + PPG GAP R TG PP
Sbjct: 779 PGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGE-TG------PPG 831
Query: 137 LAAAHGLPASEA-PGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQ 195
A G P ++ PG + + + A A P+G AP G T +
Sbjct: 832 PAGFAGPPGADGQPGAKGEQGEAGQKGD-AGAPGPQGPSGAPGP----QGPTGVTG---- 882
Query: 196 PPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDVPTRP- 254
P + G PG A R G G+PGP P +D P+ + P
Sbjct: 883 --PKGARGAQGPPGATGFPGAAGRVGP--PGSNGNPGPPGPPGPSGKDGPKGARGDSGPP 938
Query: 255 --------AGPSPFYCEGTEPGSQAWSARAGTASWETAAAQR-----PDQLEETRPPGAA 301
GP+ E EPG S G + A QR P Q E PG
Sbjct: 939 GRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLP 998
Query: 302 RPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGGSERQNSKRIV 361
P + A G D G G + P L P R G+ G++ +
Sbjct: 999 GPSGEPGKQGAP-----GASGDRGPPGPV--GPPGLTGPAGEPGREGSPGADGPPGRDGA 1051
Query: 362 YAGPGELRELVEVGEP 377
G+ E VG P
Sbjct: 1052 AGVKGDRGETGAVGAP 1067
Score = 30.8 bits (68), Expect = 2.8
Identities = 57/232 (24%), Positives = 75/232 (32%), Gaps = 32/232 (13%)
Query: 80 RGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAA 139
RG G PG+ + P + GS + GAP G P R PP
Sbjct: 392 RGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP-------GFPGPRGPPGPQG 444
Query: 140 AHGLPASEAPGLRPDSARTRLRLRLASARLPRGLP-PA-PAAGLWRAGCTRLRPLLLQP- 196
A G + P A + + P+G P PA P AG R +P
Sbjct: 445 ATGPLGPKGQTGEPGIAGFK------GEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPG 498
Query: 197 --PPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDVPTRP 254
P+ PG +PG A GE P + G + N D P RP
Sbjct: 499 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGD-------PGRP 551
Query: 255 AGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPGAR 306
P PG++ + R G A + E+ RP GAR
Sbjct: 552 GEPG-------LPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR 596
Score = 29.6 bits (65), Expect = 6.2
Identities = 73/295 (24%), Positives = 95/295 (32%), Gaps = 43/295 (14%)
Query: 196 PPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDVPTRPA 255
P P PG PG+ + A G G + G P PR P P
Sbjct: 161 PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQG--PMGPMGPRGPPGPAGAP 218
Query: 256 GPSPFYCEGTEPGSQAWSARAGTAS--------WETAAAQRPDQLEETRPPG--AAR--P 303
GP F EPG S G + A +P + E PPG AR P
Sbjct: 219 GPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFP 278
Query: 304 GARRLRSLASRLPRGGRWLDGG-------GSGRLTREPASLPNPIPPGSR---------- 346
G L + RG LDG G + P +P P G R
Sbjct: 279 GTPGLPGVKGH--RGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTG 336
Query: 347 -VGAGGSERQNSKRIVYAGPGELRELVEVGEPKSDPLLWEAGLDRAQ-VLGLRRRKTAHA 404
GA G+ + + PG + G P + EAG A+ G + +
Sbjct: 337 PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG 396
Query: 405 LDAAPPPAGT--RAGTISSRISSGHWEPPILAFRIVGKQVYPPARPRLPAPPRGS 457
+P PAG GT + G P I G +P PR P P+G+
Sbjct: 397 TPGSPGPAGASGNPGTDGIPGAKGSAGAP----GIAGAPGFP--GPRGPPGPQGA 445
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 47.4 bits (111), Expect = 3e-05
Identities = 86/301 (28%), Positives = 101/301 (33%), Gaps = 54/301 (17%)
Query: 78 PGR-GRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPL-----QVGGAPRRRAHLTG--GP 129
PG+ G GLPGA L + A PPG P Q P L G GP
Sbjct: 545 PGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP 604
Query: 130 PRR--RP-----PRLAAAHGL--PASEA--PGLRPDSARTRLRLRLASARLPRGLPPAPA 178
P +P P A A GL P E PG R L + PRGLP P
Sbjct: 605 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGL-------QGPRGLPGTPG 657
Query: 179 AGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGR 238
+ P Q P PGL PG R G +GD G +
Sbjct: 658 TDGPKGASGPAGPPGAQGP----PGLQGMPG--------ERGAAGIAGPKGDRGDVGEKG 705
Query: 239 PE---NEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEET 295
PE +D R P P GP+ E E G + AG A P + ET
Sbjct: 706 PEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAG-------ARGAPGERGET 758
Query: 296 RPPG----AARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGG 351
PPG A PGA G+ D G G + P+ P P P G G
Sbjct: 759 GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG--PQGPSGAPGPQGPTGVTGPKG 816
Query: 352 S 352
+
Sbjct: 817 A 817
Score = 42.0 bits (97), Expect = 0.001
Identities = 77/323 (23%), Positives = 93/323 (28%), Gaps = 49/323 (15%)
Query: 81 GRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAP--RRRAHLTGGPPRRRPPRLA 138
G G PG +P ++ P G R P G P A G R PP
Sbjct: 144 GPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 203
Query: 139 AAHGLPASE----------------------APGLRPDSARTRLRLRLASARLPRGLPPA 176
A G P + APG++ +S PRGL P
Sbjct: 204 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPG-ENGSPGPMGPRGL-PG 261
Query: 177 PAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVG 236
AG R QP P PG G A G +G+ GP
Sbjct: 262 ERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAG--------GPGFPGAPGAKGEAGPTGA 313
Query: 237 GRPENEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWE--TAAAQRPDQLEE 294
PE PR P P P P G PG+ G+A A P
Sbjct: 314 RGPEGAQGPR--GEPGTPGSPGPAGASG-NPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP 370
Query: 295 TRPPGAARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGGSER 354
P GA P P+G G + + P P P P G G E
Sbjct: 371 PGPQGATGPLG----------PKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEG 420
Query: 355 QNSKRIVYAGPGELRELVEVGEP 377
+ R G G + E G P
Sbjct: 421 KRGARGEPGGVGPIGPPGERGAP 443
Score = 32.3 bits (72), Expect = 0.95
Identities = 69/246 (28%), Positives = 83/246 (33%), Gaps = 33/246 (13%)
Query: 78 PG-RGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPR 136
PG RG G PG L + +P ++ G R P G P G P R P
Sbjct: 917 PGQRGERGFPG---LPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGP-AGEPGREGSP- 971
Query: 137 LAAAHGLPASE-APGLRPDSARTRLRLRLASARLPRGLP-PAPAAG-------------L 181
A G P + A G++ D T + A P G P PA G +
Sbjct: 972 --GADGPPGRDGAAGVKGDRGETGA-VGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1028
Query: 182 WRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPEN 241
+G R + P G A PG E + H R T G G PGP +
Sbjct: 1029 GPSGPAGARGIQGPQGPRGDKGEAGEPG-ERGLKGH-RGFTGLQGLPGPPGP---SGDQG 1083
Query: 242 EDSPRFPDVPTRPAGP-SPFYCEGTE--PGSQAWSARAGTASWETAAAQRPDQLEETRPP 298
P P P P GP P +G PG G S ET A P PP
Sbjct: 1084 ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRG-RSGETGPAGPPGNPGPPGPP 1142
Query: 299 GAARPG 304
G PG
Sbjct: 1143 GPPGPG 1148
Score = 31.6 bits (70), Expect = 1.6
Identities = 79/316 (25%), Positives = 102/316 (32%), Gaps = 43/316 (13%)
Query: 78 PGRGRG-GLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPR 136
PG+ G GL G A + PPG GAP R TG PP
Sbjct: 710 PGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGE-TG------PPG 762
Query: 137 LAAAHGLPASEA-PGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQ 195
A G P ++ PG + + + A A P+G AP G T +
Sbjct: 763 PAGFAGPPGADGQPGAKGEQGEAGQKGD-AGAPGPQGPSGAPGP----QGPTGVTG---- 813
Query: 196 PPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDVPTRP- 254
P + G PG A R G G+PGP P +D P+ + P
Sbjct: 814 --PKGARGAQGPPGATGFPGAAGRVGP--PGSNGNPGPPGPPGPSGKDGPKGARGDSGPP 869
Query: 255 --------AGPSPFYCEGTEPGSQAWSARAGTASWETAAAQR-----PDQLEETRPPGAA 301
GP+ E EPG S G + A QR P Q E PG
Sbjct: 870 GRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLP 929
Query: 302 RPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGAGGSERQNSKRIV 361
P + A G D G G + P L P R G+ G++ +
Sbjct: 930 GPSGEPGKQGAP-----GASGDRGPPGPV--GPPGLTGPAGEPGREGSPGADGPPGRDGA 982
Query: 362 YAGPGELRELVEVGEP 377
G+ E VG P
Sbjct: 983 AGVKGDRGETGAVGAP 998
Score = 30.8 bits (68), Expect = 2.8
Identities = 57/232 (24%), Positives = 75/232 (32%), Gaps = 32/232 (13%)
Query: 80 RGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAA 139
RG G PG+ + P + GS + GAP G P R PP
Sbjct: 323 RGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP-------GFPGPRGPPGPQG 375
Query: 140 AHGLPASEAPGLRPDSARTRLRLRLASARLPRGLP-PA-PAAGLWRAGCTRLRPLLLQP- 196
A G + P A + + P+G P PA P AG R +P
Sbjct: 376 ATGPLGPKGQTGEPGIAGFK------GEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPG 429
Query: 197 --PPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDVPTRP 254
P+ PG +PG A GE P + G + N D P RP
Sbjct: 430 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGD-------PGRP 482
Query: 255 AGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPGAR 306
P PG++ + R G A + E+ RP GAR
Sbjct: 483 GEPG-------LPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR 527
Score = 29.6 bits (65), Expect = 6.2
Identities = 73/295 (24%), Positives = 95/295 (32%), Gaps = 43/295 (14%)
Query: 196 PPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDVPTRPA 255
P P PG PG+ + A G G + G P PR P P
Sbjct: 92 PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQG--PMGPMGPRGPPGPAGAP 149
Query: 256 GPSPFYCEGTEPGSQAWSARAGTAS--------WETAAAQRPDQLEETRPPG--AAR--P 303
GP F EPG S G + A +P + E PPG AR P
Sbjct: 150 GPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFP 209
Query: 304 GARRLRSLASRLPRGGRWLDGG-------GSGRLTREPASLPNPIPPGSR---------- 346
G L + RG LDG G + P +P P G R
Sbjct: 210 GTPGLPGVKGH--RGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTG 267
Query: 347 -VGAGGSERQNSKRIVYAGPGELRELVEVGEPKSDPLLWEAGLDRAQ-VLGLRRRKTAHA 404
GA G+ + + PG + G P + EAG A+ G + +
Sbjct: 268 PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG 327
Query: 405 LDAAPPPAGT--RAGTISSRISSGHWEPPILAFRIVGKQVYPPARPRLPAPPRGS 457
+P PAG GT + G P I G +P PR P P+G+
Sbjct: 328 TPGSPGPAGASGNPGTDGIPGAKGSAGAP----GIAGAPGFP--GPRGPPGPQGA 376
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 47.4 bits (111), Expect = 3e-05
Identities = 85/339 (25%), Positives = 114/339 (33%), Gaps = 71/339 (20%)
Query: 48 AHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRG----GLPG---------AAALGAG 94
A ++P +LR+ G R C G G G P A GA
Sbjct: 178 ARRKTPLSLCPLKLRK--------GSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGAR 229
Query: 95 AQQPRRRRLAQPPGSRAPLQV-GGAPRRRAHLTGGPPRRR---PPRLAAAHGLPASEAPG 150
AQ + A P + P V G RA GG R+R P + + G P E
Sbjct: 230 AQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTSGGRPTGERSS 289
Query: 151 LRP--DSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLL------------QP 196
P D ++ L +AR+ PP+ AA WR G + +P +L +
Sbjct: 290 REPLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEE 349
Query: 197 PPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDVPTRPAG 256
P L + G EL ARA H + G P P RP
Sbjct: 350 DPRSGRALEPAQGSELWARA--ERHGGSSGARTLPTP----------------SRARPGK 391
Query: 257 PSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPGARRLRSLASRLP 316
P+P G+ P ++ G+ + + R + T G RR SR P
Sbjct: 392 PAP---RGSAPPARLRGGGGGSGLTQLVGSGRGSGV--THSVGTHALATRR----GSRAP 442
Query: 317 RGGRWLDGGGSGRLTREPASLPNPIPP-----GSRVGAG 350
R L G R PA P P G R+GAG
Sbjct: 443 RPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAG 481
Score = 33.5 bits (75), Expect = 0.43
Identities = 59/236 (25%), Positives = 72/236 (30%), Gaps = 29/236 (12%)
Query: 11 SSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVI 70
S A W LG + +R E + PAQ S+ R R G
Sbjct: 317 SLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSS 376
Query: 71 VGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPP 130
R P R R G P R + PP A L+ GG L G
Sbjct: 377 GARTLPTPSRARPGKPAP-------------RGSAPP---ARLRGGGGGSGLTQLVGSGR 420
Query: 131 RRRPPRLAAAHGLP---ASEAPGLRPDSA-RTRLRLRLASARLPRGLPPAPAAGLW--RA 184
H L S AP RP R R S+ P+ P +P+ + R
Sbjct: 421 GSGVTHSVGTHALATRRGSRAP--RPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRL 478
Query: 185 GCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPE 240
G RL P PG+A H R C GG + P G R E
Sbjct: 479 GAGRL-SCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQ----PFAGRRAE 529
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 47.4 bits (111), Expect = 3e-05
Identities = 85/339 (25%), Positives = 114/339 (33%), Gaps = 71/339 (20%)
Query: 48 AHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRG----GLPG---------AAALGAG 94
A ++P +LR+ G R C G G G P A GA
Sbjct: 178 ARRKTPLSLCPLKLRK--------GSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGAR 229
Query: 95 AQQPRRRRLAQPPGSRAPLQV-GGAPRRRAHLTGGPPRRR---PPRLAAAHGLPASEAPG 150
AQ + A P + P V G RA GG R+R P + + G P E
Sbjct: 230 AQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTSGGRPTGERSS 289
Query: 151 LRP--DSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLL------------QP 196
P D ++ L +AR+ PP+ AA WR G + +P +L +
Sbjct: 290 REPLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEE 349
Query: 197 PPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDVPTRPAG 256
P L + G EL ARA H + G P P RP
Sbjct: 350 DPRSGRALEPAQGSELWARA--ERHGGSSGARTLPTP----------------SRARPGK 391
Query: 257 PSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPGARRLRSLASRLP 316
P+P G+ P ++ G+ + + R + T G RR SR P
Sbjct: 392 PAP---RGSAPPARLRGGGGGSGLTQLVGSGRGSGV--THSVGTHALATRR----GSRAP 442
Query: 317 RGGRWLDGGGSGRLTREPASLPNPIPP-----GSRVGAG 350
R L G R PA P P G R+GAG
Sbjct: 443 RPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAG 481
Score = 33.5 bits (75), Expect = 0.43
Identities = 59/236 (25%), Positives = 72/236 (30%), Gaps = 29/236 (12%)
Query: 11 SSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVI 70
S A W LG + +R E + PAQ S+ R R G
Sbjct: 317 SLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSS 376
Query: 71 VGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPP 130
R P R R G P R + PP A L+ GG L G
Sbjct: 377 GARTLPTPSRARPGKPAP-------------RGSAPP---ARLRGGGGGSGLTQLVGSGR 420
Query: 131 RRRPPRLAAAHGLP---ASEAPGLRPDSA-RTRLRLRLASARLPRGLPPAPAAGLW--RA 184
H L S AP RP R R S+ P+ P +P+ + R
Sbjct: 421 GSGVTHSVGTHALATRRGSRAP--RPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRL 478
Query: 185 GCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPE 240
G RL P PG+A H R C GG + P G R E
Sbjct: 479 GAGRL-SCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQ----PFAGRRAE 529
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 46.2 bits (108), Expect = 6e-05
Identities = 63/221 (28%), Positives = 84/221 (38%), Gaps = 27/221 (12%)
Query: 29 PRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPGA 88
P P+ PR S + ++ RSP S++R R R + RRR+ R
Sbjct: 11 PSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRS-----RRRSRSLRWLR----- 60
Query: 89 AALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEA 148
RR R P S P G +GG P +A P +
Sbjct: 61 ----------RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGAS---PASEGSAMSPPPPRS 107
Query: 149 PGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLL---LQPPPMLSPGLA 205
LR S R R RLRL R L + R+ +RLR L + S L+
Sbjct: 108 SSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLS 167
Query: 206 QSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPR 246
+S L +R+ SR+ + G GEG PG GRP SPR
Sbjct: 168 RSRLRSLRSRSRSRSRSLCGSGEG-PGLDEVGRPVWLGSPR 207
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 46.2 bits (108), Expect = 6e-05
Identities = 63/221 (28%), Positives = 84/221 (38%), Gaps = 27/221 (12%)
Query: 29 PRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPGA 88
P P+ PR S + ++ RSP S++R R R + RRR+ R
Sbjct: 11 PSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRS-----RRRSRSLRWLR----- 60
Query: 89 AALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEA 148
RR R P S P G +GG P +A P +
Sbjct: 61 ----------RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGAS---PASEGSAMSPPPPRS 107
Query: 149 PGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLL---LQPPPMLSPGLA 205
LR S R R RLRL R L + R+ +RLR L + S L+
Sbjct: 108 SSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLS 167
Query: 206 QSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPR 246
+S L +R+ SR+ + G GEG PG GRP SPR
Sbjct: 168 RSRLRSLRSRSRSRSRSLCGSGEG-PGLDEVGRPVWLGSPR 207
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 46.2 bits (108), Expect = 6e-05
Identities = 63/221 (28%), Positives = 84/221 (38%), Gaps = 27/221 (12%)
Query: 29 PRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPGA 88
P P+ PR S + ++ RSP S++R R R + RRR+ R
Sbjct: 11 PSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRS-----RRRSRSLRWLR----- 60
Query: 89 AALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEA 148
RR R P S P G +GG P +A P +
Sbjct: 61 ----------RRSRSRSRPFSSGPSGPSGPSSPGGPSSGGAS---PASEGSAMSPPPPRS 107
Query: 149 PGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLL---LQPPPMLSPGLA 205
LR S R R RLRL R L + R+ +RLR L + S L+
Sbjct: 108 SSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLS 167
Query: 206 QSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPR 246
+S L +R+ SR+ + G GEG PG GRP SPR
Sbjct: 168 RSRLRSLRSRSRSRSRSLCGSGEG-PGLDEVGRPVWLGSPR 207
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 45.1 bits (105), Expect = 1e-04
Identities = 105/359 (29%), Positives = 125/359 (34%), Gaps = 58/359 (16%)
Query: 72 GRRRACPGRGRGGL--PGAAALGAGAQQ----PRRRRLAQPPGSRAPLQVGGAPRRRAHL 125
GR RA P +G GG AAA G Q PRR L SR G P
Sbjct: 59 GRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLR----SRTDPAFGAGPLPLVSR 114
Query: 126 TGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAG 185
G R P + + AS PG RPD L L + P G AP G
Sbjct: 115 LGHAGERGSPGAGDVNPVSASSPPG-RPDP------LLLTTFVFPPGKTSAPRPS---PG 164
Query: 186 CTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSP 245
R RPL L+PGL SP ++ S T G R N +P
Sbjct: 165 GRRGRPLGAARGTGLNPGL--SPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAP 222
Query: 246 RFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPGA 305
R AG P G G +A A + ++ P PPG +R A
Sbjct: 223 RGSRRLRPDAGKFPEASGG--KGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRERA 280
Query: 306 -RRLRSLASRLPRGGRWLDGGGSGRLTRE---PA--SLPNPIPPGSRVGAGGSERQNSKR 359
L + ++PR G W R RE PA +L +P PP S A R
Sbjct: 281 GAGLSRDSPQVPRSGSW------ARPCREQGHPAVLALQSPAPP-SLARAAARRR----- 328
Query: 360 IVYAGPGELRE--LVEVGEPKSDPLLWEAGLD------RAQVLGLRRRKTAHALDAAPP 410
GPG E V + PLL G + RA GLR R L AAPP
Sbjct: 329 ----GPGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRD----LRAAPP 379
Score = 37.0 bits (84), Expect = 0.039
Identities = 70/268 (26%), Positives = 81/268 (30%), Gaps = 55/268 (20%)
Query: 75 RACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPG----------SRAPLQVGGAPRRRAH 124
R PG GR G P AA G G RL +P G SRA AP RR +
Sbjct: 160 RPSPG-GRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRN 218
Query: 125 LTG--GPPRRRP-----PRLAAAHGL--------------PASEAPGLRPDSARTRLRLR 163
G R RP P + G P S PGL
Sbjct: 219 FGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRE 278
Query: 164 LASARLPRGLPPAPAAGLWRAGCTR-----LRPLLLQPPPMLS--------PGLAQSPGV 210
A A L R P P +G W C + L PP L+ PG A PG
Sbjct: 279 RAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGF 338
Query: 211 ELHARAHSRAHTCAGGGEGD------PGPIVGGRPENEDSPRFPDVPTRPAG---PSPFY 261
A + G EG P P + R PR P RP F+
Sbjct: 339 VTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPR-PRPSQRPVSGLFKVKFF 397
Query: 262 CEGTEPGSQAWSARAGTASWETAAAQRP 289
+ PGS A T + P
Sbjct: 398 VPQSGPGSSACEVAVPTTAGRELLGSEP 425
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 45.1 bits (105), Expect = 1e-04
Identities = 105/359 (29%), Positives = 125/359 (34%), Gaps = 58/359 (16%)
Query: 72 GRRRACPGRGRGGL--PGAAALGAGAQQ----PRRRRLAQPPGSRAPLQVGGAPRRRAHL 125
GR RA P +G GG AAA G Q PRR L SR G P
Sbjct: 59 GRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLR----SRTDPAFGAGPLPLVSR 114
Query: 126 TGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAG 185
G R P + + AS PG RPD L L + P G AP G
Sbjct: 115 LGHAGERGSPGAGDVNPVSASSPPG-RPDP------LLLTTFVFPPGKTSAPRPS---PG 164
Query: 186 CTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSP 245
R RPL L+PGL SP ++ S T G R N +P
Sbjct: 165 GRRGRPLGAARGTGLNPGL--SPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAP 222
Query: 246 RFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPGA 305
R AG P G G +A A + ++ P PPG +R A
Sbjct: 223 RGSRRLRPDAGKFPEASGG--KGQRAAGAERVLDNGRGPRSRLPGLAGGVEPPGWSRERA 280
Query: 306 -RRLRSLASRLPRGGRWLDGGGSGRLTRE---PA--SLPNPIPPGSRVGAGGSERQNSKR 359
L + ++PR G W R RE PA +L +P PP S A R
Sbjct: 281 GAGLSRDSPQVPRSGSW------ARPCREQGHPAVLALQSPAPP-SLARAAARRR----- 328
Query: 360 IVYAGPGELRE--LVEVGEPKSDPLLWEAGLD------RAQVLGLRRRKTAHALDAAPP 410
GPG E V + PLL G + RA GLR R L AAPP
Sbjct: 329 ----GPGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRD----LRAAPP 379
Score = 37.0 bits (84), Expect = 0.039
Identities = 70/268 (26%), Positives = 81/268 (30%), Gaps = 55/268 (20%)
Query: 75 RACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPG----------SRAPLQVGGAPRRRAH 124
R PG GR G P AA G G RL +P G SRA AP RR +
Sbjct: 160 RPSPG-GRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRN 218
Query: 125 LTG--GPPRRRP-----PRLAAAHGL--------------PASEAPGLRPDSARTRLRLR 163
G R RP P + G P S PGL
Sbjct: 219 FGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLDNGRGPRSRLPGLAGGVEPPGWSRE 278
Query: 164 LASARLPRGLPPAPAAGLWRAGCTR-----LRPLLLQPPPMLS--------PGLAQSPGV 210
A A L R P P +G W C + L PP L+ PG A PG
Sbjct: 279 RAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGF 338
Query: 211 ELHARAHSRAHTCAGGGEGD------PGPIVGGRPENEDSPRFPDVPTRPAG---PSPFY 261
A + G EG P P + R PR P RP F+
Sbjct: 339 VTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPR-PRPSQRPVSGLFKVKFF 397
Query: 262 CEGTEPGSQAWSARAGTASWETAAAQRP 289
+ PGS A T + P
Sbjct: 398 VPQSGPGSSACEVAVPTTAGRELLGSEP 425
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 45.1 bits (105), Expect = 1e-04
Identities = 105/359 (29%), Positives = 125/359 (34%), Gaps = 58/359 (16%)
Query: 72 GRRRACPGRGRGGL--PGAAALGAGAQQ----PRRRRLAQPPGSRAPLQVGGAPRRRAHL 125
GR RA P +G GG AAA G Q PRR L SR G P
Sbjct: 59 GRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLR----SRTDPAFGAGPLPLVSR 114
Query: 126 TGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAG 185
G R P + + AS PG RPD L L + P G AP G
Sbjct: 115 LGHAGERGSPGAGDVNPVSASSPPG-RPDP------LLLTTFVFPPGKTSAPRPS---PG 164
Query: 186 CTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSP 245
R RPL L+PGL SP ++ S T G R N +P
Sbjct: 165 GRRGRPLGAARGTGLNPGL--SPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAP 222
Query: 246 RFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPGA 305
R AG P G G +A A + ++ P PPG +R A
Sbjct: 223 RGSRRLRPDAGKFPEASGG--KGQRAAGAERVLDNGRGPRSRLPGLAGGVEPPGWSRERA 280
Query: 306 -RRLRSLASRLPRGGRWLDGGGSGRLTRE---PA--SLPNPIPPGSRVGAGGSERQNSKR 359
L + ++PR G W R RE PA +L +P PP S A R
Sbjct: 281 GAGLSRDSPQVPRSGSW------ARPCREQGHPAVLALQSPAPP-SLARAAARRR----- 328
Query: 360 IVYAGPGELRE--LVEVGEPKSDPLLWEAGLD------RAQVLGLRRRKTAHALDAAPP 410
GPG E V + PLL G + RA GLR R L AAPP
Sbjct: 329 ----GPGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRD----LRAAPP 379
Score = 37.0 bits (84), Expect = 0.039
Identities = 70/268 (26%), Positives = 81/268 (30%), Gaps = 55/268 (20%)
Query: 75 RACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPG----------SRAPLQVGGAPRRRAH 124
R PG GR G P AA G G RL +P G SRA AP RR +
Sbjct: 160 RPSPG-GRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRN 218
Query: 125 LTG--GPPRRRP-----PRLAAAHGL--------------PASEAPGLRPDSARTRLRLR 163
G R RP P + G P S PGL
Sbjct: 219 FGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLDNGRGPRSRLPGLAGGVEPPGWSRE 278
Query: 164 LASARLPRGLPPAPAAGLWRAGCTR-----LRPLLLQPPPMLS--------PGLAQSPGV 210
A A L R P P +G W C + L PP L+ PG A PG
Sbjct: 279 RAGAGLSRDSPQVPRSGSWARPCREQGHPAVLALQSPAPPSLARAAARRRGPGGATEPGF 338
Query: 211 ELHARAHSRAHTCAGGGEGD------PGPIVGGRPENEDSPRFPDVPTRPAG---PSPFY 261
A + G EG P P + R PR P RP F+
Sbjct: 339 VTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPR-PRPSQRPVSGLFKVKFF 397
Query: 262 CEGTEPGSQAWSARAGTASWETAAAQRP 289
+ PGS A T + P
Sbjct: 398 VPQSGPGSSACEVAVPTTAGRELLGSEP 425
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 44.7 bits (104), Expect = 2e-04
Identities = 121/497 (24%), Positives = 169/497 (34%), Gaps = 70/497 (14%)
Query: 25 SKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRAC-PGRGRG 83
S++ P L M G P + A RSP+Q S + R +G+ + A P G
Sbjct: 588 SELSPELQAAMAGGGPEPLPLPPA--RSPSQES---IGARSRGSGHSQEQPAPQPSGGDP 642
Query: 84 GLPGAAALGAGAQQPRRRRLAQP---------------PGSRAPLQVGGAPRRRAHLTGG 128
P L G ++P + + P P S AP GAP ++L G
Sbjct: 643 SPPQERNLPEGTERPPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGP 702
Query: 129 P--------PRRRPPRLAA---AHGLPASEAPG-----LRPDSARTRLRLRLASARLPRG 172
P P+RR L+ G EA G L + TR R A R
Sbjct: 703 PATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPS 762
Query: 173 LPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPG 232
+ P PA G R+ LR PPP L+ G + G EG G
Sbjct: 763 VTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDES---PGPKEGATG 819
Query: 233 PIVGGRPENEDS-PRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQ 291
P R +E + P P P PAGP+ E EPG + G++ A+ +
Sbjct: 820 P--RRRTLSEPAGPSEPPGPPAPAGPAS-DTEEEEPGPEGTPPSRGSSGEGLPFAEEGNL 876
Query: 292 LEETRPPGAARP------------------GARRLRSLASRLPRGGRWLDGGGSGRLTRE 333
+ RP A P +R R P L G +
Sbjct: 877 TIKQRPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVASATPGP 936
Query: 334 PASLPNPIPPGSRVGAGGSERQNSKRIVYAGPGELRELVEVGEPKSDPLLWEAGLDRAQV 393
A LP+P P S + + + S P L + P P GL+ +
Sbjct: 937 AAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPV--PPCPGPGLESSAA 994
Query: 394 LGLRRRKTAHALDAA---PPPAGTRAGTISSRISSGHWEPPILAFRIVGKQVYPPARPRL 450
A AA P AGT +S + + P LA R+ G + PP RP
Sbjct: 995 SRWNGETEPPAAPAALLKVPGAGTAPKPVSVACTQLAFSGPKLAPRL-GPRPVPPPRPES 1053
Query: 451 PAP--PRGSQRRIYEAS 465
P +Q+R+ + S
Sbjct: 1054 TGTVGPGQAQQRLEQTS 1070
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 44.7 bits (104), Expect = 2e-04
Identities = 121/497 (24%), Positives = 169/497 (34%), Gaps = 70/497 (14%)
Query: 25 SKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRAC-PGRGRG 83
S++ P L M G P + A RSP+Q S + R +G+ + A P G
Sbjct: 670 SELSPELQAAMAGGGPEPLPLPPA--RSPSQES---IGARSRGSGHSQEQPAPQPSGGDP 724
Query: 84 GLPGAAALGAGAQQPRRRRLAQP---------------PGSRAPLQVGGAPRRRAHLTGG 128
P L G ++P + + P P S AP GAP ++L G
Sbjct: 725 SPPQERNLPEGTERPPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGP 784
Query: 129 P--------PRRRPPRLAA---AHGLPASEAPG-----LRPDSARTRLRLRLASARLPRG 172
P P+RR L+ G EA G L + TR R A R
Sbjct: 785 PATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPS 844
Query: 173 LPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPG 232
+ P PA G R+ LR PPP L+ G + G EG G
Sbjct: 845 VTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDES---PGPKEGATG 901
Query: 233 PIVGGRPENEDS-PRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQ 291
P R +E + P P P PAGP+ E EPG + G++ A+ +
Sbjct: 902 P--RRRTLSEPAGPSEPPGPPAPAGPAS-DTEEEEPGPEGTPPSRGSSGEGLPFAEEGNL 958
Query: 292 LEETRPPGAARP------------------GARRLRSLASRLPRGGRWLDGGGSGRLTRE 333
+ RP A P +R R P L G +
Sbjct: 959 TIKQRPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVASATPGP 1018
Query: 334 PASLPNPIPPGSRVGAGGSERQNSKRIVYAGPGELRELVEVGEPKSDPLLWEAGLDRAQV 393
A LP+P P S + + + S P L + P P GL+ +
Sbjct: 1019 AAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPV--PPCPGPGLESSAA 1076
Query: 394 LGLRRRKTAHALDAA---PPPAGTRAGTISSRISSGHWEPPILAFRIVGKQVYPPARPRL 450
A AA P AGT +S + + P LA R+ G + PP RP
Sbjct: 1077 SRWNGETEPPAAPAALLKVPGAGTAPKPVSVACTQLAFSGPKLAPRL-GPRPVPPPRPES 1135
Query: 451 PAP--PRGSQRRIYEAS 465
P +Q+R+ + S
Sbjct: 1136 TGTVGPGQAQQRLEQTS 1152
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 44.7 bits (104), Expect = 2e-04
Identities = 77/282 (27%), Positives = 102/282 (36%), Gaps = 34/282 (12%)
Query: 90 ALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGG------PPRRRPPRLAAAHGL 143
ALG G PR++ L G+RAP Q G+ L + L A G
Sbjct: 596 ALGRGPSVPRKKPLPWLGGTRAPPQPSGSRPDTVTLRSAKSEESLSSQASGAELLGAGGA 655
Query: 144 PASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLR----PL------L 193
PAS P R+ LR L L RG + C++LR PL
Sbjct: 656 PASATPTPALSPGRS-LRPHLIPLLL-RGAEAPLTDACQQEMCSKLRGAQGPLGPDMESP 713
Query: 194 LQPPP--MLSPGLAQSPGVELHAR--AHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPD 249
L PPP +L PG A P + AR A + A E GG P SP F
Sbjct: 714 LPPPPLSLLRPGGAPPPPPKNPARLMALALAERAQQVAEQQSQQECGGTPPASQSP-FHR 772
Query: 250 VPTRPAGPSPFYCEGTEPGSQ------AWSARAGTASWETAAAQRPDQLEETRPPGAARP 303
+ G P G+ P AW G + L RP G +R
Sbjct: 773 SLSLEVGGEPLGTSGSGPPPNSLAHPGAWV--PGPPPYLPRQQSDGSLLRSQRPMGTSRR 830
Query: 304 GARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIP-PG 344
G R ++++L GG D + + P S+P+ +P PG
Sbjct: 831 GLRGPAQVSAQLRAGGGGRDAPEAA--AQSPCSVPSQVPTPG 870
Score = 34.3 bits (77), Expect = 0.25
Identities = 70/273 (25%), Positives = 84/273 (30%), Gaps = 67/273 (24%)
Query: 86 PGAAALGAGAQQPRR-----RRLAQPPGSRAPLQVG-----------GAPRRRAHLTGGP 129
PG LG + QP R PP APL G G+P + P
Sbjct: 889 PGLYPLGPPSFQPSSPAPVWRSSLGPP---APLDRGENLYYEIGASEGSPYSGPTRSWSP 945
Query: 130 PRRRPP-RLAAAHGLPASEAPGLR-PDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCT 187
R PP RL A++G+ P R PD L+ P PP G
Sbjct: 946 FRSMPPDRLNASYGMLGQSPPLHRSPD-------FLLSYPPAPSCFPP-DHLGYSAPQHP 997
Query: 188 RLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRF 247
RP PP L LA P A + S + DPGP V P+ + +P
Sbjct: 998 ARRPT---PPEPLYVNLALGPRGPSPASSSSSSPPAHPRSRSDPGPPVPRLPQKQRAPWG 1054
Query: 248 PDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPGARR 307
P P R GP W P L PP R G
Sbjct: 1055 PRTPHRVPGP--------------W------------GPPEPLLLYRAAPPAYGRGG--- 1085
Query: 308 LRSLASRLPRGGRWLDGGGSGRLTREPASLPNP 340
L RG + +GG G P P P
Sbjct: 1086 ------ELHRGSLYRNGGQRGEGAGPPPPYPTP 1112
>gi|239757110 PREDICTED: hypothetical protein [Homo sapiens]
Length = 192
Score = 43.9 bits (102), Expect = 3e-04
Identities = 54/186 (29%), Positives = 67/186 (36%), Gaps = 15/186 (8%)
Query: 103 LAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEA--PGLRPDSARTRL 160
LA+ + P G A RRAH +G P + R R AA GLP P S+
Sbjct: 3 LAEESAAGHPTPGGPASARRAH-SGRPHQAR--RHPAAWGLPVRRPSHPPRPTTSSWANG 59
Query: 161 RLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRA 220
R A L LP P GL GC R P + P G + H R
Sbjct: 60 SNRQHPAELSVQLPANPPPGL-NQGCIRAASAPRWVPTLTVPQATLPGGSQGHRR----- 113
Query: 221 HTCAGGGEGDPGPIVGGRPENEDSP--RFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGT 278
C G GEG V +P +P + P P P + G++A A T
Sbjct: 114 --CRGEGEGQRRGCVEKQPRPTPTPACELTGLAPAPPTPPPAWWRWARTGTRAMGGAAST 171
Query: 279 ASWETA 284
S TA
Sbjct: 172 GSAPTA 177
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 43.9 bits (102), Expect = 3e-04
Identities = 51/157 (32%), Positives = 58/157 (36%), Gaps = 30/157 (19%)
Query: 28 PPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPG 87
PPRLP T S + +QTRLRRR A+ R CP R G
Sbjct: 115 PPRLPRPFT---------------SASFSNQTRLRRRSASALPAPR--LCPQRASPGCSS 157
Query: 88 AAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASE 147
G G R R + A Q G R R+ G R LA A LP
Sbjct: 158 PGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAFVAG----RDAALACAQ-LPRRP 212
Query: 148 APGLRPDSARTRLRLRLAS----ARLPRGLPPAPAAG 180
R AR +R RL + A PRG P APA G
Sbjct: 213 ----RGAGARRGMRRRLGAGERPAPRPRGPPRAPARG 245
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 43.9 bits (102), Expect = 3e-04
Identities = 51/157 (32%), Positives = 58/157 (36%), Gaps = 30/157 (19%)
Query: 28 PPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPG 87
PPRLP T S + +QTRLRRR A+ R CP R G
Sbjct: 115 PPRLPRPFT---------------SASFSNQTRLRRRSASALPAPR--LCPQRASPGCSS 157
Query: 88 AAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASE 147
G G R R + A Q G R R+ G R LA A LP
Sbjct: 158 PGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAFVAG----RDAALACAQ-LPRRP 212
Query: 148 APGLRPDSARTRLRLRLAS----ARLPRGLPPAPAAG 180
R AR +R RL + A PRG P APA G
Sbjct: 213 ----RGAGARRGMRRRLGAGERPAPRPRGPPRAPARG 245
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 43.5 bits (101), Expect = 4e-04
Identities = 84/308 (27%), Positives = 100/308 (32%), Gaps = 61/308 (19%)
Query: 76 ACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPP 135
A RGRGG AA G+ Q P R L S A P + L PP
Sbjct: 236 AAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGSA----SPP 291
Query: 136 RLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQ 195
RLAA L S AP L P R R R + A LP + + G G R R
Sbjct: 292 RLAAP--LAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRR----- 344
Query: 196 PPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDP-GPIVGGRPENEDSPR-------F 247
G E R R CA G P GP GR + R
Sbjct: 345 -------------GGE-ERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGG 390
Query: 248 PDVPTRPAGPSPFYCEGTEPGSQAWSA--RAGTASWETAAAQR-----------PDQLEE 294
P V R G P ++ S R A+W+ A R P E
Sbjct: 391 PGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAE 450
Query: 295 TRPPG--AARPGARRLRSLASRLPRGGR-----------WLD-GGGSGRLTREPASLP-N 339
P G A+ P L S ++ P GR +LD G G + P+ P N
Sbjct: 451 EVPGGHTASNPTYEPLSSRRTKAPSEGRDSPSSPATSTHYLDRESGLGSVNSHPSRSPYN 510
Query: 340 PIPPGSRV 347
PP V
Sbjct: 511 WSPPSPSV 518
Score = 32.0 bits (71), Expect = 1.2
Identities = 43/153 (28%), Positives = 50/153 (32%), Gaps = 25/153 (16%)
Query: 19 LGPSAYSKIPPRLPIRMTWG-----IPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGR 73
L P S PPRL + P ++ RSPA + R +G +VG
Sbjct: 281 LQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGA 340
Query: 74 RRACPG---RGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRA----HLT 126
RR G R RG G A L PP P G A RRA
Sbjct: 341 RRRRGGEERRVRGRRQGCA-------------LGSPPIPAGPAAPGRAGERRAARQWRKR 387
Query: 127 GGPPRRRPPRLAAAHGLPASEAPGLRPDSARTR 159
GG P P A G+ P R S R
Sbjct: 388 GGGPGVSPREGAQGEGVRGGVTPRARGSSTCLR 420
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 43.5 bits (101), Expect = 4e-04
Identities = 63/234 (26%), Positives = 85/234 (36%), Gaps = 44/234 (18%)
Query: 233 PIVGGRPENEDSPR--------FPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETA 284
P+ R EN D+ R F + P SP PG + + G
Sbjct: 3 PVGRSRSENADTARLFGTAVYTFEVLGALPPDRSPTPRSRVSPGVTSLAVGPGN------ 56
Query: 285 AAQRPDQLEETRPP--GAARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIP 342
P + + + P G PG ++LR +RLPR + + G GR R+PA P +
Sbjct: 57 ----PTRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRQGREDAGVGRRNRDPAE-PGSLR 111
Query: 343 PGSRVGAGGSERQNSKRIVYAGPG-ELRELVEVGEPKSDPLLWEAGLDRAQVLGLRRRKT 401
P S G R R+ A PG +LR GEPK+ P R+ G R
Sbjct: 112 PTS---LGFPARAGQGRVQGAAPGRKLR-----GEPKTPP-------GRSGPSGGVRSGA 156
Query: 402 AHALDAAPPPAGTRAGTISSRISSGHWEPPILAFRIVGKQVYP--PARPRLPAP 453
H AA G + +G P L G + P P RP P P
Sbjct: 157 GHRAAAAEHQLGA-----GFSVRNGPGPPARLPPAPPGPLLRPARPPRPYFPRP 205
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 43.5 bits (101), Expect = 4e-04
Identities = 84/308 (27%), Positives = 100/308 (32%), Gaps = 61/308 (19%)
Query: 76 ACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPP 135
A RGRGG AA G+ Q P R L S A P + L PP
Sbjct: 236 AAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGSA----SPP 291
Query: 136 RLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQ 195
RLAA L S AP L P R R R + A LP + + G G R R
Sbjct: 292 RLAAP--LAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRR----- 344
Query: 196 PPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDP-GPIVGGRPENEDSPR-------F 247
G E R R CA G P GP GR + R
Sbjct: 345 -------------GGE-ERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGG 390
Query: 248 PDVPTRPAGPSPFYCEGTEPGSQAWSA--RAGTASWETAAAQR-----------PDQLEE 294
P V R G P ++ S R A+W+ A R P E
Sbjct: 391 PGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAE 450
Query: 295 TRPPG--AARPGARRLRSLASRLPRGGR-----------WLD-GGGSGRLTREPASLP-N 339
P G A+ P L S ++ P GR +LD G G + P+ P N
Sbjct: 451 EVPGGHTASNPTYEPLSSRRTKAPSEGRDSPSSPATSTHYLDRESGLGSVNSHPSRSPYN 510
Query: 340 PIPPGSRV 347
PP V
Sbjct: 511 WSPPSPSV 518
Score = 32.0 bits (71), Expect = 1.2
Identities = 43/153 (28%), Positives = 50/153 (32%), Gaps = 25/153 (16%)
Query: 19 LGPSAYSKIPPRLPIRMTWG-----IPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGR 73
L P S PPRL + P ++ RSPA + R +G +VG
Sbjct: 281 LQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGA 340
Query: 74 RRACPG---RGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRA----HLT 126
RR G R RG G A L PP P G A RRA
Sbjct: 341 RRRRGGEERRVRGRRQGCA-------------LGSPPIPAGPAAPGRAGERRAARQWRKR 387
Query: 127 GGPPRRRPPRLAAAHGLPASEAPGLRPDSARTR 159
GG P P A G+ P R S R
Sbjct: 388 GGGPGVSPREGAQGEGVRGGVTPRARGSSTCLR 420
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,597,079
Number of Sequences: 37866
Number of extensions: 1793454
Number of successful extensions: 11227
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 995
Number of HSP's that attempted gapping in prelim test: 9277
Number of HSP's gapped (non-prelim): 2763
length of query: 470
length of database: 18,247,518
effective HSP length: 106
effective length of query: 364
effective length of database: 14,233,722
effective search space: 5181074808
effective search space used: 5181074808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.