Guide to the Human Genome
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Name: LOC100287499 Sequence: fasta or formatted (255aa) NCBI GI: 239746046
Description:

PREDICTED: hypothetical protein XP_002343643

Not currently referenced in the text

Other entries for this name:
alt mRNA {255aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.3         44           4
 C cysteine            2.7          7           1
 D aspartate           2.0          5           1
 E glutamate           1.2          3           1
 F phenylalanine       3.1          8           1
 G glycine            16.5         42           5
 H histidine           0.4          1           1
 I isoleucine          0.4          1           1
 K lysine              0.0          0           0
 L leucine             4.3         11           1
 M methionine          0.8          2           1
 N asparagine          0.8          2           1
 P proline            13.7         35           2
 Q glutamine           4.7         12           1
 R arginine           18.8         48           3
 S serine              7.8         20           2
 T threonine           1.2          3           1
 V valine              3.1          8           1
 W tryptophan          0.8          2           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343643 
LOC100287499          1.000   PREDICTED: hypothetical protein 
LOC100292370          0.060   PREDICTED: hypothetical protein 
FLJ37078              0.060   hypothetical protein LOC222183 
LOC100287063          0.056   PREDICTED: hypothetical protein 
TRIO                  0.056   triple functional domain (PTPRF interacting) 
LOC643355             0.052   PREDICTED: hypothetical protein 
LOC643355             0.052   PREDICTED: hypothetical protein 
LOC643355             0.052   PREDICTED: hypothetical protein 
FLJ31945              0.050   PREDICTED: hypothetical protein 
LOC100288796          0.050   PREDICTED: hypothetical protein 
LOC100288796          0.050   PREDICTED: hypothetical protein XP_002343710 
LOC339192             0.048   PREDICTED: hypothetical protein 
SYN1                  0.048   synapsin I isoform Ia 
SYN1                  0.048   synapsin I isoform Ib 
LOC100130360          0.048   PREDICTED: hypothetical protein 
DACT3                 0.048   thymus expressed gene 3-like 
ARID1B                0.048   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.048   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.048   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
COL1A2                0.046   alpha 2 type I collagen 
LOC728503             0.046   PREDICTED: hypothetical protein 
LOC100293375          0.046   PREDICTED: hypothetical protein 
LOC100290812          0.046   PREDICTED: hypothetical protein XP_002347678 
LOC728503             0.046   PREDICTED: hypothetical protein 
LOC100288205          0.046   PREDICTED: hypothetical protein XP_002343496 
LOC728503             0.046   PREDICTED: hypothetical protein 
LOC339192             0.044   PREDICTED: hypothetical protein 
LOC100287063          0.044   PREDICTED: hypothetical protein XP_002342368 
COL3A1                0.044   collagen type III alpha 1 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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