Guide to the Human Genome
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Name: LOC100128511 Sequence: fasta or formatted (436aa) NCBI GI: 169194607
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {436aa} PREDICTED: hypothetical protein
alt mRNA {436aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.6         55           2
 C cysteine            1.8          8           1
 D aspartate           3.2         14           1
 E glutamate           3.9         17           1
 F phenylalanine       1.4          6           1
 G glycine            11.5         50           3
 H histidine           3.4         15           1
 I isoleucine          1.8          8           1
 K lysine              1.4          6           1
 L leucine             6.9         30           3
 M methionine          0.9          4           1
 N asparagine          0.2          1           1
 P proline            13.1         57           3
 Q glutamine           2.3         10           1
 R arginine           15.8         69           5
 S serine              9.2         40           2
 T threonine           3.7         16           1
 V valine              5.7         25           2
 W tryptophan          0.9          4           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128511          1.000   PREDICTED: hypothetical protein 
LOC100128511          1.000   PREDICTED: hypothetical protein 
SRRM1                 0.041   serine/arginine repetitive matrix 1 
LOC338758             0.035   PREDICTED: hypothetical protein 
LOC338758             0.035   PREDICTED: hypothetical protein 
LOC338758             0.035   PREDICTED: hypothetical protein 
FLJ37078              0.031   hypothetical protein LOC222183 
LOC100290359          0.031   PREDICTED: hypothetical protein XP_002346414 
LOC100287202          0.031   PREDICTED: hypothetical protein XP_002342114 
LOC643355             0.030   PREDICTED: hypothetical protein 
LOC643355             0.030   PREDICTED: hypothetical protein 
LOC643355             0.028   PREDICTED: hypothetical protein 
COL2A1                0.026   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.026   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A1                0.026   alpha 1 type I collagen preproprotein 
FLJ22184              0.026   PREDICTED: hypothetical protein FLJ22184 
COL25A1               0.026   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.026   collagen, type XXV, alpha 1 isoform 2 
LOC100293055          0.025   PREDICTED: similar to COL22A1 protein 
COL22A1               0.025   collagen, type XXII, alpha 1 
COL3A1                0.024   collagen type III alpha 1 preproprotein 
COL23A1               0.024   collagen, type XXIII, alpha 1 
COL7A1                0.023   alpha 1 type VII collagen precursor 
LOC100130360          0.023   PREDICTED: hypothetical protein 
COL16A1               0.023   alpha 1 type XVI collagen precursor 
LOC100291807          0.023   PREDICTED: hypothetical protein XP_002345507 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
COL17A1               0.022   alpha 1 type XVII collagen 
AGAP2                 0.022   centaurin, gamma 1 isoform PIKE-L 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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