Guide to the Human Genome
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Name: LOC100292688 Sequence: fasta or formatted (192aa) NCBI GI: 239757110
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.1         29           2
 C cysteine            2.6          5           1
 D aspartate           0.0          0           0
 E glutamate           3.6          7           2
 F phenylalanine       0.0          0           0
 G glycine            12.5         24           2
 H histidine           4.2          8           1
 I isoleucine          0.5          1           1
 K lysine              0.5          1           1
 L leucine             5.2         10           1
 M methionine          1.0          2           1
 N asparagine          2.1          4           1
 P proline            17.7         34           3
 Q glutamine           4.2          8           1
 R arginine           10.9         21           2
 S serine              6.2         12           2
 T threonine           7.3         14           2
 V valine              3.1          6           1
 W tryptophan          3.1          6           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC441056             0.056   PREDICTED: double homeobox, 4-like 
SFPQ                  0.056   splicing factor proline/glutamine rich (polypyrimidin...
LOC440017             0.056   PREDICTED: similar to double homeobox, 4 
LOC728022             0.056   PREDICTED: similar to double homeobox, 4 
LOC100289581          0.056   PREDICTED: hypothetical protein XP_002343082 
LOC440014             0.056   PREDICTED: similar to double homeobox, 4 
LOC399839             0.056   PREDICTED: similar to double homeobox, 4 
LOC440013             0.056   PREDICTED: similar to double homeobox, 4 
LOC653548             0.056   PREDICTED: double homeobox, 4-like 
DUX4                  0.056   double homeobox, 4 
LOC728410             0.056   double homeobox, 4-like 
LOC653543             0.056   double homeobox, 4-like 
LOC653545             0.056   double homeobox, 4-like 
LOC653544             0.056   double homeobox, 4-like 
SCARF2                0.053   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.053   scavenger receptor class F, member 2 isoform 2 [Homo...
ARHGAP17              0.048   nadrin isoform 1 
ARHGAP17              0.048   nadrin isoform 2 
LOC100290359          0.048   PREDICTED: hypothetical protein XP_002346414 
LOC100287202          0.048   PREDICTED: hypothetical protein XP_002342114 
LOC729370             0.046   PREDICTED: hypothetical protein 
WASF3                 0.046   WAS protein family, member 3 
LOC100292934          0.043   PREDICTED: hypothetical protein 
ATN1                  0.043   atrophin-1 
ATN1                  0.043   atrophin-1 
RANBP9                0.041   RAN binding protein 9 
LOC100127891          0.038   PREDICTED: similar to hCG2042508 
LOC100127891          0.038   PREDICTED: similar to hCG2042508 
LOC100127891          0.038   PREDICTED: similar to hCG2042508 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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