Guide to the Human Genome
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Name: LOC100287563 Sequence: fasta or formatted (231aa) NCBI GI: 239751841
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {231aa} PREDICTED: hypothetical protein XP_002343733
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          8           2
 C cysteine            0.9          2           1
 D aspartate           1.3          3           1
 E glutamate           3.0          7           1
 F phenylalanine       0.9          2           1
 G glycine             7.4         17           2
 H histidine           0.0          0           0
 I isoleucine          1.3          3           1
 K lysine              0.0          0           0
 L leucine            12.1         28           2
 M methionine          1.3          3           1
 N asparagine          0.0          0           0
 P proline            13.0         30           5
 Q glutamine           0.4          1           1
 R arginine           26.0         60           3
 S serine             25.1         58           3
 T threonine           0.4          1           1
 V valine              1.7          4           1
 W tryptophan          1.3          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293644          1.000   PREDICTED: hypothetical protein 
LOC100287563          1.000   PREDICTED: hypothetical protein XP_002343733 
SRRM2                 0.129   splicing coactivator subunit SRm300 
RSRC2                 0.110   arginine/serine-rich coiled-coil 2 isoform a 
SFRS4                 0.103   splicing factor, arginine/serine-rich 4 
SFRS16                0.103   splicing factor, arginine/serine-rich 16 
LOC100170229          0.098   hypothetical protein LOC100170229 
SFRS6                 0.098   arginine/serine-rich splicing factor 6 
KIAA1853              0.094   KIAA1853 protein 
PNN                   0.094   pinin, desmosome associated protein 
SFRS18                0.094   splicing factor, arginine/serine-rich 130 
SFRS18                0.094   splicing factor, arginine/serine-rich 130 
DDX46                 0.089   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
SON                   0.087   SON DNA-binding protein isoform F 
SON                   0.087   SON DNA-binding protein isoform B 
SRRM1                 0.082   serine/arginine repetitive matrix 1 
SCAF1                 0.082   SR-related CTD-associated factor 1 
SFRS11                0.080   splicing factor, arginine/serine-rich 11 
SFRS2                 0.080   splicing factor, arginine/serine-rich 2 
SFRS2B                0.077   splicing factor, arginine/serine-rich 2B 
RSRC2                 0.075   arginine/serine-rich coiled-coil 2 isoform b 
SFRS7                 0.075   splicing factor, arginine/serine-rich 7 
PRPF4B                0.075   serine/threonine-protein kinase PRP4K 
ZRANB2                0.073   zinc finger protein 265 isoform 1 
C1orf63               0.073   hypothetical protein LOC57035 
SNRNP70               0.070   U1 small nuclear ribonucleoprotein 70 kDa 
FLJ37078              0.070   hypothetical protein LOC222183 
LOC731605             0.070   PREDICTED: similar to BCL2-associated transcription...
FUSIP1                0.070   FUS interacting protein (serine-arginine rich) 1 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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