Guide to the Human Genome
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Name: LOC100287920 Sequence: fasta or formatted (398aa) NCBI GI: 239746104
Description:

PREDICTED: hypothetical protein XP_002344198

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         43           4
 C cysteine            1.5          6           1
 D aspartate           1.5          6           1
 E glutamate           2.8         11           1
 F phenylalanine       2.3          9           1
 G glycine            10.6         42           2
 H histidine           1.0          4           1
 I isoleucine          0.3          1           1
 K lysine              1.0          4           1
 L leucine            10.1         40           2
 M methionine          0.3          1           1
 N asparagine          1.0          4           1
 P proline            18.3         73           4
 Q glutamine           3.3         13           2
 R arginine           14.1         56           2
 S serine              8.8         35           2
 T threonine           5.5         22           1
 V valine              5.8         23           1
 W tryptophan          0.3          1           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344198 
LOC100292184          0.882   PREDICTED: hypothetical protein 
LOC100292727          0.471   PREDICTED: hypothetical protein 
LOC100287524          0.090   PREDICTED: hypothetical protein XP_002342307 
NACA                  0.054   nascent polypeptide-associated complex alpha subuni...
WIPF1                 0.052   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.052   WAS/WASL interacting protein family, member 1 
MLL4                  0.052   myeloid/lymphoid or mixed-lineage leukemia 4 
TAF4                  0.051   TBP-associated factor 4 
FLJ22184              0.047   PREDICTED: hypothetical protein FLJ22184 
RERE                  0.047   atrophin-1 like protein isoform b 
RERE                  0.047   atrophin-1 like protein isoform a 
RERE                  0.047   atrophin-1 like protein isoform a 
SRRM2                 0.047   splicing coactivator subunit SRm300 
FLJ22184              0.044   PREDICTED: hypothetical protein LOC80164 
WIPF3                 0.044   WAS/WASL interacting protein family, member 3 [Homo...
KLF2                  0.043   Kruppel-like factor 
GLTSCR1               0.042   glioma tumor suppressor candidate region gene 1 [Ho...
ZYX                   0.042   zyxin 
ZYX                   0.042   zyxin 
WIPF2                 0.042   WIRE protein 
CASKIN1               0.041   CASK interacting protein 1 
LOC100287104          0.041   PREDICTED: hypothetical protein XP_002343630 
MYPOP                 0.041   Myb protein P42POP 
SFPQ                  0.041   splicing factor proline/glutamine rich (polypyrimidin...
GNAS                  0.041   GNAS complex locus alex 
FLJ22184              0.041   PREDICTED: hypothetical protein FLJ22184 
KDM6B                 0.038   lysine (K)-specific demethylase 6B 
BAT2                  0.038   HLA-B associated transcript-2 
ATN1                  0.038   atrophin-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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