Guide to the Human Genome
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Name: LOC100292934 Sequence: fasta or formatted (370aa) NCBI GI: 239752764
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.5         61           3
 C cysteine            1.4          5           1
 D aspartate           1.4          5           1
 E glutamate           3.0         11           1
 F phenylalanine       0.5          2           1
 G glycine            10.8         40           3
 H histidine           2.4          9           1
 I isoleucine          1.6          6           1
 K lysine              0.8          3           1
 L leucine             8.9         33           3
 M methionine          1.4          5           2
 N asparagine          0.5          2           1
 P proline            15.1         56           3
 Q glutamine           3.5         13           2
 R arginine           16.2         60           4
 S serine              6.8         25           2
 T threonine           4.9         18           1
 V valine              2.2          8           1
 W tryptophan          1.6          6           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290359          0.618   PREDICTED: hypothetical protein XP_002346414 
LOC100287202          0.618   PREDICTED: hypothetical protein XP_002342114 
MAP7D1                0.043   MAP7 domain containing 1 
FLJ31945              0.042   PREDICTED: hypothetical protein 
FLJ31945              0.042   PREDICTED: hypothetical protein 
SHANK1                0.042   SH3 and multiple ankyrin repeat domains 1 
SYN1                  0.039   synapsin I isoform Ia 
SYN1                  0.039   synapsin I isoform Ib 
GGN                   0.039   gametogenetin 
TAF4                  0.039   TBP-associated factor 4 
MYPOP                 0.038   Myb protein P42POP 
NACA                  0.035   nascent polypeptide-associated complex alpha subuni...
PRRT1                 0.035   NG5 protein 
LOC643355             0.034   PREDICTED: hypothetical protein 
KRTAP4-9              0.034   PREDICTED: keratin associated protein 4-9 
C6orf136              0.034   hypothetical protein LOC221545 isoform 3 
MBD6                  0.034   methyl-CpG binding domain protein 6 
PCLO                  0.033   piccolo isoform 2 
PCLO                  0.033   piccolo isoform 1 
COL17A1               0.033   alpha 1 type XVII collagen 
PTPN23                0.033   protein tyrosine phosphatase, non-receptor type 23 [...
SPEG                  0.033   SPEG complex locus 
SRRM2                 0.033   splicing coactivator subunit SRm300 
WBP11                 0.033   WW domain binding protein 11 
SAMD1                 0.033   sterile alpha motif domain containing 1 
FAM71E2               0.031   hypothetical protein LOC284418 
LOC731282             0.031   PREDICTED: hypothetical protein 
FMN2                  0.031   formin 2 
RAPH1                 0.031   Ras association and pleckstrin homology domains 1 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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