Guide to the Human Genome
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Name: LOC100287202 Sequence: fasta or formatted (470aa) NCBI GI: 239741124
Description:

PREDICTED: hypothetical protein XP_002342114

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         62           3
 C cysteine            1.1          5           1
 D aspartate           2.1         10           1
 E glutamate           4.5         21           2
 F phenylalanine       0.9          4           1
 G glycine            12.1         57           3
 H histidine           1.9          9           1
 I isoleucine          2.8         13           1
 K lysine              1.7          8           1
 L leucine             8.9         42           3
 M methionine          1.1          5           2
 N asparagine          0.9          4           1
 P proline            13.8         65           3
 Q glutamine           3.6         17           2
 R arginine           14.9         70           4
 S serine              7.2         34           2
 T threonine           3.6         17           1
 V valine              2.8         13           1
 W tryptophan          1.7          8           1
 Y tyrosine            1.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342114 
LOC100290359          1.000   PREDICTED: hypothetical protein XP_002346414 
LOC100292934          0.484   PREDICTED: hypothetical protein 
SYN1                  0.032   synapsin I isoform Ia 
SYN1                  0.032   synapsin I isoform Ib 
MYO15A                0.030   myosin XV 
COL3A1                0.029   collagen type III alpha 1 preproprotein 
LOC100128511          0.029   PREDICTED: hypothetical protein 
LOC100128511          0.029   PREDICTED: hypothetical protein 
LOC100128511          0.029   PREDICTED: hypothetical protein 
HCN2                  0.027   hyperpolarization activated cyclic nucleotide-gated...
COL2A1                0.023   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.023   collagen, type II, alpha 1 isoform 2 precursor [Hom...
FLJ31945              0.023   PREDICTED: hypothetical protein 
FLJ31945              0.023   PREDICTED: hypothetical protein 
LOC100293644          0.022   PREDICTED: hypothetical protein 
LOC100287563          0.022   PREDICTED: hypothetical protein 
LOC100287563          0.022   PREDICTED: hypothetical protein XP_002343733 
LOC100130128          0.021   PREDICTED: hypothetical protein 
LOC100130128          0.021   PREDICTED: hypothetical protein 
LOC100130128          0.021   PREDICTED: hypothetical protein 
CASKIN2               0.021   cask-interacting protein 2 isoform b 
CASKIN2               0.021   cask-interacting protein 2 isoform a 
SNX26                 0.021   sorting nexin 26 
LOC100292688          0.020   PREDICTED: hypothetical protein 
LOC100287499          0.020   PREDICTED: hypothetical protein 
LOC100287499          0.020   PREDICTED: hypothetical protein XP_002343643 
LOC643355             0.020   PREDICTED: hypothetical protein 
LOC100287920          0.020   PREDICTED: hypothetical protein XP_002344198 
LOC643355             0.020   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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