Guide to the Human Genome
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Search of human proteins with 239744993

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo
sapiens]
         (193 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756163 PREDICTED: hypothetical protein [Homo sapiens]           409   e-114
gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo ...   409   e-114
gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo ...   409   e-114
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]            47   1e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                44   1e-04
gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a...    43   1e-04
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H...    43   2e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi...    42   2e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      42   4e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    42   4e-04
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ...    42   4e-04
gi|18641360 collectin sub-family member 12 [Homo sapiens]              42   4e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    42   4e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    42   4e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    42   4e-04
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               42   4e-04
gi|77681565 NG5 protein [Homo sapiens]                                 42   4e-04
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s...    42   4e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         42   4e-04
gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo ...    41   6e-04
gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo ...    41   6e-04
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo...    41   6e-04
gi|45120115 hypothetical protein LOC56905 [Homo sapiens]               41   7e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      40   0.001
gi|178557734 microtubule-associated protein tau isoform 6 [Homo ...    40   0.001
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    40   0.001
gi|18079216 CASK interacting protein 1 [Homo sapiens]                  40   0.002
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    40   0.002
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    40   0.002
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          40   0.002

>gi|239756163 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 193

 Score =  409 bits (1050), Expect = e-114
 Identities = 193/193 (100%), Positives = 193/193 (100%)

Query: 1   MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60
           MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF
Sbjct: 1   MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60

Query: 61  SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS 120
           SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS
Sbjct: 61  SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS 120

Query: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
           PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA
Sbjct: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180

Query: 181 QVPSRPAAVLFPM 193
           QVPSRPAAVLFPM
Sbjct: 181 QVPSRPAAVLFPM 193


>gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo
           sapiens]
          Length = 193

 Score =  409 bits (1050), Expect = e-114
 Identities = 193/193 (100%), Positives = 193/193 (100%)

Query: 1   MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60
           MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF
Sbjct: 1   MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60

Query: 61  SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS 120
           SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS
Sbjct: 61  SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS 120

Query: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
           PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA
Sbjct: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180

Query: 181 QVPSRPAAVLFPM 193
           QVPSRPAAVLFPM
Sbjct: 181 QVPSRPAAVLFPM 193


>gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo
           sapiens]
          Length = 193

 Score =  409 bits (1050), Expect = e-114
 Identities = 193/193 (100%), Positives = 193/193 (100%)

Query: 1   MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60
           MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF
Sbjct: 1   MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60

Query: 61  SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS 120
           SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS
Sbjct: 61  SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS 120

Query: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
           PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA
Sbjct: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180

Query: 181 QVPSRPAAVLFPM 193
           QVPSRPAAVLFPM
Sbjct: 181 QVPSRPAAVLFPM 193


>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 447

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 39/113 (34%), Positives = 46/113 (40%), Gaps = 24/113 (21%)

Query: 79  PETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-G 137
           P TS+      + AP   + PGRAR+PR+           PS   PR     +G R R G
Sbjct: 280 PRTSAGLAGVGSGAPGEPAEPGRARAPRSA----------PSSREPRQTKRRVGSRARAG 329

Query: 138 PGGHKGPGPARGR------PCPRCLPG------LPGLPITHIRFPAAPLPPRL 178
            G   GP PA  +      P PRCLP        P     H R PA   PP L
Sbjct: 330 AGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGS-PPAL 381


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 38/85 (44%), Positives = 40/85 (47%), Gaps = 17/85 (20%)

Query: 98  PPGRARSP-----RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKG-PGPARGRP 151
           PPG AR P     R+GPP L    G      P   P LLG  L+GP G  G PGP    P
Sbjct: 673 PPG-ARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLG--LQGPPGPPGVPGP----P 725

Query: 152 CPRCLPGLPGLPITHIRFPAAPLPP 176
            P   PGLPG     I FP  P PP
Sbjct: 726 GPGGSPGLPG----EIGFPGKPGPP 746



 Score = 35.8 bits (81), Expect = 0.023
 Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 98  PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP 157
           PPG   SP  G P  +   G P P  P   P        GP G  GP   +G P  R   
Sbjct: 724 PPGPGGSP--GLPGEIGFPGKPGPPGPTGPPGK-----DGPNGPPGPPGTKGEPGERGED 776

Query: 158 GLPGLP 163
           GLPG P
Sbjct: 777 GLPGKP 782



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 33/108 (30%), Positives = 36/108 (33%), Gaps = 17/108 (15%)

Query: 73   GPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP-------RNGPPLLVSHTG---FPSPN 122
            GP  L        +  R   P     PG+A  P         GPP    HTG    P P 
Sbjct: 1231 GPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPR 1290

Query: 123  RPRPAPHLLGHRL-------RGPGGHKGPGPARGRPCPRCLPGLPGLP 163
                A  L G           GP G +GP   RG P     PG PG P
Sbjct: 1291 GESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEP 1338



 Score = 32.3 bits (72), Expect = 0.26
 Identities = 29/72 (40%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 99  PGRARSPRNGPPLLVSHTGFPSPNRPRP---APHLLGHRLR-GPGGHKGPGPARGRPCP- 153
           PG A +P  G P    H G P P+ P     AP L G   + G  G KG     G P P 
Sbjct: 912 PGAAGNP--GAP---GHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPV 966

Query: 154 --RCLPGLPGLP 163
             R  PG PGLP
Sbjct: 967 GPRGDPGAPGLP 978



 Score = 30.8 bits (68), Expect = 0.75
 Identities = 37/147 (25%), Positives = 45/147 (30%), Gaps = 22/147 (14%)

Query: 17  PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRH 76
           PP  +G+R     +  PG     G++    P     P     S      +     PGP  
Sbjct: 688 PPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPGP-- 745

Query: 77  LRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR 136
                           P    PPG+     NGPP      G P        P   G  LR
Sbjct: 746 ----------------PGPTGPPGK--DGPNGPPGPPGTKGEPGERGEDGLPGKPG--LR 785

Query: 137 GPGGHKGPGPARGRPCPRCLPGLPGLP 163
           G  G +G     G      LPG PG P
Sbjct: 786 GEIGEQGLAGRPGEKGEAGLPGAPGFP 812



 Score = 30.4 bits (67), Expect = 0.98
 Identities = 28/80 (35%), Positives = 31/80 (38%), Gaps = 14/80 (17%)

Query: 98   PPGRARSPRN-GPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKG------PGPAR- 148
            PPG +  P + G P      GFP P  P       G+   RGP G  G      PG    
Sbjct: 1049 PPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINL 1108

Query: 149  -----GRPCPRCLPGLPGLP 163
                    CP   PGLPGLP
Sbjct: 1109 LAKDVCNDCPPGPPGLPGLP 1128



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 117  GFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
            G P     R  P   G  + GP G  GP   +G P  R LPG PG
Sbjct: 1031 GIPGSPGSRGDP---GIGVAGPPGPSGPPGDKGSPGSRGLPGFPG 1072



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 99   PGRARSP----RNGPPLLVSHTGFPSPNRPRPAPHLLGHR----LRGPGGHKGPGPARGR 150
            PG+   P      G P +    G P        P + GH+    L GP G  G     G 
Sbjct: 1383 PGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGP 1442

Query: 151  PCPRCLPGLPGL 162
            P P   PG PGL
Sbjct: 1443 PGPPGQPGFPGL 1454



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 33/105 (31%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 73  GPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR-NGPPLLVSHTGFPSPNRPRPAPHLL 131
           GP  L   TS    H R   P    P G    P   G P L    G   P  P       
Sbjct: 846 GPPGLPGTTSLFTPHPRM--PGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPT------ 897

Query: 132 GHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPP 176
                GP G KG   A G P     PG PG    H+  P    PP
Sbjct: 898 -----GPPGAKGQEGAHGAPGAAGNPGAPG----HVGAPGPSGPP 933



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 98   PPGRARSPRN----GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCP 153
            PPG+  SP +    GP       G    N     P  LG R  GP G  G    +G P  
Sbjct: 1325 PPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPR--GPPGEPGE---KGVPGK 1379

Query: 154  RCLPGLPGLP 163
              +PG PG P
Sbjct: 1380 EGVPGKPGEP 1389



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 25/77 (32%), Positives = 28/77 (36%), Gaps = 14/77 (18%)

Query: 98  PPGRARSP-RNGPPLLVSHTGFPS----------PNRPRPAPHLLGHRLRGPGGHKGPGP 146
           PPGR  S    G P  +   G P           P  P P   +    L+G  G KG   
Sbjct: 540 PPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKG--- 596

Query: 147 ARGRPCPRCLPGLPGLP 163
            RG    R L G PG P
Sbjct: 597 TRGEKGERGLDGFPGKP 613



 Score = 27.3 bits (59), Expect = 8.3
 Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 99   PGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR----LRGPGGHKGPGPARGRPCPR 154
            PG   SP +     +   G P P+ P       G R      GP G  G   A G P  R
Sbjct: 1030 PGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGER 1089

Query: 155  CLPGLPGL 162
              PG PGL
Sbjct: 1090 GPPGKPGL 1097



 Score = 27.3 bits (59), Expect = 8.3
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 115  HTGFPS----PNRPRP--APHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            H G P     P  P P  A  + G    GP G +G     G P P+   GLPG+P
Sbjct: 1187 HPGVPGFMGPPGNPGPPGADGIAG--AAGPPGIQGSPGKEGPPGPQGPSGLPGIP 1239


>gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a
           [Homo sapiens]
          Length = 410

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 44/156 (28%), Positives = 57/156 (36%), Gaps = 28/156 (17%)

Query: 57  ASSFSYSTPVQ-TATNPGPRHLRPETSSSKQHFRTKAPRNLS-----------------P 98
           +SS S S+P Q TA  P P     ++ SS  H R + P + +                 P
Sbjct: 121 SSSSSSSSPSQDTAETPCPLTSHVDSDSSSSHSRQETPPSAAAAPIITMESASGFGPTTP 180

Query: 99  PGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCL-- 156
           P R RS     P L+  TG P P+ P      LG   RG   ++  GP        C+  
Sbjct: 181 PQRRRSSAQSYPPLLPFTGIPEPSEPLAGAGGLGWGGRGYEDYRRSGPPAPLALSTCVVR 240

Query: 157 ----PGLPGLPITHIRFPAAPLPPRLVAQVPSRPAA 188
                 L G  +     P A LP  L    P  P A
Sbjct: 241 FAKTGALRGAALG----PPAALPAPLTEAAPPAPPA 272


>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
           sapiens]
          Length = 309

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 49/183 (26%), Positives = 63/183 (34%), Gaps = 28/183 (15%)

Query: 2   PRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFS 61
           P   P QG +     PPR  G    P     P QG  +       P     P     + S
Sbjct: 120 PEGPPPQGGNQSQGPPPRP-GKPEGP-----PPQGGNQSQGPPPRPGKPEGPPPQGGNQS 173

Query: 62  YSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP 121
              P       GP    P+  +  Q    +  +   PP +  +   GPP        P P
Sbjct: 174 QGPPPHPGKPEGPP---PQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPP--------PRP 222

Query: 122 NRPRPAPHLLGHRLRGPGGH----KGPGPARG----RPCPRCLPGLPGLPITHIRFPAAP 173
            +P   P   G++ +GP  H    +GP P  G    RP P   PG P  P      P  P
Sbjct: 223 GKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPP---PGRPQGPPPPGGNPQQP 279

Query: 174 LPP 176
           LPP
Sbjct: 280 LPP 282


>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
           sapiens]
          Length = 816

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 58/202 (28%), Positives = 73/202 (36%), Gaps = 27/202 (13%)

Query: 1   MPRDSPDQGESIRPRLP---PRTRGVRTSPRMLVAPGQGHTR------GVRRGVSPVAQA 51
           +PR +P    S RPR P   PR      S      P     R      G++R  S  + +
Sbjct: 180 LPRPAP----SARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASR-SLS 234

Query: 52  DPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPL 111
             A   SS + S P    T   P H         Q  R   P  ++PP +  +P  GP L
Sbjct: 235 SSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALR---PPQVTPPRKDAAPALGP-L 290

Query: 112 LVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP-GLPGLPITHIRFP 170
             S    PSP+ P P+P         P     P P    P       G P L  TH   P
Sbjct: 291 SSSPLATPSPSAP-PSPSA------PPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLP 343

Query: 171 AAPLPPRLVAQVPSRPAAVLFP 192
           + PL P L    P  P A+  P
Sbjct: 344 SPPLSP-LATPPPQAPPALALP 364



 Score = 37.7 bits (86), Expect = 0.006
 Identities = 45/182 (24%), Positives = 65/182 (35%), Gaps = 17/182 (9%)

Query: 15  RLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGP 74
           R  P  RG   +PR    P Q   +G++  + P     P +DA+             P P
Sbjct: 245 RSGPSARG---TPRAPAHPSQPKPKGLQ-ALRPPQVTPPRKDAAPALGPLSSSPLATPSP 300

Query: 75  RHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP-------NRPRPA 127
               P + S+    +T      +PP +A +    P L  +H+  PSP         P+  
Sbjct: 301 S--APPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAP 358

Query: 128 PHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITH-IRFPAAPLPPRLVAQVPSRP 186
           P L    L+ P       P      P   P  P     H ++ P +P PP    Q P  P
Sbjct: 359 PALALPPLQAPPSPPASPPLSPLATPS--PQAPNALAVHLLQAPFSP-PPSPPVQAPFSP 415

Query: 187 AA 188
            A
Sbjct: 416 PA 417


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 53/183 (28%), Positives = 64/183 (34%), Gaps = 26/183 (14%)

Query: 2   PRDSPDQGESIRPRLPPRTRGVRTSPRMLV---------APGQGHTRGVRRGVSPVAQAD 52
           P     QGES RP  PP   G R  P ++          APG+   RG   G  P  Q  
Sbjct: 551 PGPPGSQGESGRPG-PPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGP--QGP 607

Query: 53  PAQDASSFSYSTPVQTATN--------PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARS 104
           P ++  +     P  T           PGP+ L+    +         P    P G A +
Sbjct: 608 PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGA 667

Query: 105 PRNGPPLLVSHTGFPSPNRP---RPAPHLLGHR-LRGPGGHKGPGPARGRPCPRCLPGLP 160
           P  G P      G P    P     AP L G     GP G KG     G P     PGL 
Sbjct: 668 P--GAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQ 725

Query: 161 GLP 163
           G+P
Sbjct: 726 GMP 728



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 55/181 (30%), Positives = 64/181 (35%), Gaps = 43/181 (23%)

Query: 2   PRDSPDQGESIRPRLPPRTR-----GVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQD 56
           PR +P  GE  RP LP         G R S      PG   T G     SP A+ +    
Sbjct: 301 PRGAP--GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG--SPGAKGEVGPA 356

Query: 57  ASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN--------- 107
            S  S   P Q    PGP+           H   + P    PPG   SP           
Sbjct: 357 GSPGSNGAPGQRG-EPGPQG----------HAGAQGPPG--PPGINGSPGGKGEMGPAGI 403

Query: 108 -GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR------CLPGLP 160
            G P L+   G P P     AP L     RG  G  G   A+G P PR       +PG+P
Sbjct: 404 PGAPGLMGARGPPGPAGANGAPGL-----RGGAGEPGKNGAKGEPGPRGERGEAGIPGVP 458

Query: 161 G 161
           G
Sbjct: 459 G 459



 Score = 35.4 bits (80), Expect = 0.030
 Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 93  PRNLSPPGRARSPR-NGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRP 151
           P     PG   SP   GPP      G   P+ P   P  +G    GP G  G     GRP
Sbjct: 185 PGTSGHPGSPGSPGYQGPP---GEPGQAGPSGPPGPPGAIGPS--GPAGKDGESGRPGRP 239

Query: 152 CPRCLPGLPGL 162
             R LPG PG+
Sbjct: 240 GERGLPGPPGI 250



 Score = 35.0 bits (79), Expect = 0.040
 Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 94  RNLSPPGRARSPRNGP--PLLVSHTGFPSPNRPRP---APHLLGHR-LRGPGGHKGPGPA 147
           R L  P   + P   P  P +  H GF   N  +    AP L G   L G  G  GP   
Sbjct: 242 RGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGP 301

Query: 148 RGRPCPRCLPGLPG 161
           RG P  R  PGLPG
Sbjct: 302 RGAPGERGRPGLPG 315



 Score = 35.0 bits (79), Expect = 0.040
 Identities = 53/183 (28%), Positives = 71/183 (38%), Gaps = 31/183 (16%)

Query: 2   PRDSP-DQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60
           PR SP ++GE+     PP   G   +P     PG    +G R       +  P   A   
Sbjct: 793 PRGSPGERGETG----PPGPAGFPGAPGQNGEPGG---KGERGAPGEKGEGGPPGVAGPP 845

Query: 61  SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPR------------NLSPPGRARSP-RN 107
             S P   A  PGP+ ++ E  S         P             N  PPG + SP ++
Sbjct: 846 GGSGP---AGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKD 902

Query: 108 GPPLLVSHTGFP-SP--NRPRPAPHLLGHR----LRGPGGHKGPGPARGRPCPRCLPGLP 160
           GPP    +TG P SP  + P+      G +     +GP G  GP    G    R L G P
Sbjct: 903 GPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPP 962

Query: 161 GLP 163
           G+P
Sbjct: 963 GMP 965



 Score = 34.3 bits (77), Expect = 0.068
 Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 72   PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP-------RNGPPLLVSHTGFPSPNRP 124
            PGP+ L     ++ +  R   P +   PGR  SP        NG P      G P P  P
Sbjct: 995  PGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGP 1054

Query: 125  RPAPHLLGHRLR----GPGGHKGPGPARGRPCPR 154
                   G R      GP G  GP  +RG P P+
Sbjct: 1055 VGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQ 1088



 Score = 30.8 bits (68), Expect = 0.75
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
           P  P   P+  G   +GP G  GP    GR     +PG PG        P +P PP +  
Sbjct: 92  PTAPTRPPN--GQGPQGPKGDPGPPGIPGRNGDPGIPGQPG-------SPGSPGPPGICE 142

Query: 181 QVPSRP 186
             P+ P
Sbjct: 143 SCPTGP 148



 Score = 30.8 bits (68), Expect = 0.75
 Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 11/156 (7%)

Query: 14   PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATN-- 71
            P  P   +G R SP    A G    RG+           P   + S     P   A N  
Sbjct: 853  PPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTG 912

Query: 72   -PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN-----GPPLLVSHTGFPSPNRPR 125
             PG   +      + Q     +P    PPG A  P       G   L    G P P R  
Sbjct: 913  APGSPGVSGPKGDAGQPGEKGSPGAQGPPG-APGPLGIAGITGARGLAGPPGMPGP-RGS 970

Query: 126  PAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
            P P  +      PG + G    RG P P+ LPGL G
Sbjct: 971  PGPQGVKGESGKPGAN-GLSGERGPPGPQGLPGLAG 1005



 Score = 30.4 bits (67), Expect = 0.98
 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 98  PPGRARSPRN-GPPLLVSHTGFPSPN-------RPRPAPHLLGHRLRGPGGHKGPGPARG 149
           PPG A  P + G    V   G P  N        P P  H       GP G  G    +G
Sbjct: 337 PPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKG 396

Query: 150 RPCPRCLPGLPGL 162
              P  +PG PGL
Sbjct: 397 EMGPAGIPGAPGL 409



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 97  SPPGRARSPRNGPPLLVSHTGF---PSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCP 153
           SP G     + GPP     +G    P P+ PR  P ++G    GP G+ G   A G+   
Sbjct: 541 SPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMG--FPGPKGNDG---APGKNGE 595

Query: 154 RCLPGLPG 161
           R  PG PG
Sbjct: 596 RGGPGGPG 603



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 98  PPGRARSPR-NGPPLLVSHTGFPSPNRPRPAPHLLG-------HRLRGPGGHKGPGPARG 149
           PPG A +P   G P      G P P   +  P   G          RGP G  GP    G
Sbjct: 715 PPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAG 774

Query: 150 RPCPRCLPGLPGLP 163
           +P  +   G PGLP
Sbjct: 775 QPGDKGEGGAPGLP 788



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 46/172 (26%), Positives = 53/172 (30%), Gaps = 50/172 (29%)

Query: 21   RGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPE 80
            RG   SP    APG            P     PA  +     S P   A  PGP   R  
Sbjct: 1034 RGENGSPGAPGAPGHP---------GPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRG- 1083

Query: 81   TSSSKQHFRTKAPRNLSPPG-RARSPRNGPPLLVSHTGFP----SPNRPRPAPHLLGHRL 135
                       AP    P G +  +   G   +  H GFP    +P  P PA        
Sbjct: 1084 -----------APGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGS 1132

Query: 136  RGPGGHKGP-GPAR--------------GRPCPRC---------LPGLPGLP 163
             GP G +GP GP+               G P PR           PG PG P
Sbjct: 1133 PGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQP 1184



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 18/101 (17%)

Query: 72  PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP----RNGPPLLVSHTGFPSPNRPRPA 127
           PGPR  R E            P      G+  SP     NG P      G P    P   
Sbjct: 443 PGPRGERGEAGIPG------VPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGP 496

Query: 128 PHLLGHRLRGPGGHKG-PGP-----ARGRPCPRCLPGLPGL 162
             + G +  GP G +G PGP     A G P    +PG PG+
Sbjct: 497 NGIPGEK--GPAGERGAPGPAGPRGAAGEPGRDGVPGGPGM 535



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 99   PGRARSP--RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCL 156
            P   R P   +GPP     +G P P  P P P   G+R  G  G +G     G+P P   
Sbjct: 1135 PAGPRGPVGPSGPPGKDGTSGHPGPIGP-PGPR--GNR--GERGSEGSPGHPGQPGPPGP 1189

Query: 157  PGLPG 161
            PG PG
Sbjct: 1190 PGAPG 1194



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 112 LVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKGPGPARGR------PCPRCLPGLPGLP 163
           L    G P P  PR AP   G   L G  G +G   ARG       P P    G PG P
Sbjct: 289 LPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSP 347



 Score = 27.7 bits (60), Expect = 6.3
 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
           GPP      G P       AP L G  + GP G  G     G P P   PG PG
Sbjct: 768 GPP---GPAGQPGDKGEGGAPGLPG--IAGPRGSPGERGETGPPGPAGFPGAPG 816


>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 855

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 61/215 (28%), Positives = 80/215 (37%), Gaps = 34/215 (15%)

Query: 2   PRDSPDQ-GESIR--PRLP-----PRTRGVR-------TSPRMLVAPGQGHTRGVRRGV- 45
           P  SP + G S R  PR P     P+ +G++       T PR   AP  G          
Sbjct: 248 PLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATP 307

Query: 46  SPVA----QADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGR 101
           SP A    QA P   A+  S S   Q AT   P  L P + S+    +T      +PP +
Sbjct: 308 SPSAALQSQAPPTLPATPHSSSLTCQLAT---PLPLAPPSPSAPPSLQTLPSPPATPPSQ 364

Query: 102 ARSPRNGPPLLVSHTGFPSP-------NRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR 154
           A +    P L  +H+  PSP         P+  P L    L+ P       P      P 
Sbjct: 365 ATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPS 424

Query: 155 CLPGLPGLPITH-IRFPAAPLPPRLVAQVPSRPAA 188
             P  P     H ++ P +P PP    Q P  P A
Sbjct: 425 --PQAPNALAVHLLQAPFSP-PPSPPVQAPFSPPA 456



 Score = 35.8 bits (81), Expect = 0.023
 Identities = 58/225 (25%), Positives = 75/225 (33%), Gaps = 43/225 (19%)

Query: 1   MPRDSPDQGESIRPRLP---PRTRGVRTSPRMLVAPGQGHTR------GVRRGVSPVAQA 51
           +PR +P    S RPR P   PR      S      P     R      G++R  S  + +
Sbjct: 189 LPRPAP----SARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASR-SLS 243

Query: 52  DPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPL 111
             A   SS + S P    T   P H         Q  R   P  ++PP +  +P  GP L
Sbjct: 244 SSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALR---PPQVTPPRKDAAPALGP-L 299

Query: 112 LVSHTGFPSPNRPRPA---------PHLLGHRLR-------GPGGHKGPGPARGRPCPRC 155
             S    PSP+    +         PH      +        P     P   +  P P  
Sbjct: 300 SSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPA 359

Query: 156 LP--------GLPGLPITHIRFPAAPLPPRLVAQVPSRPAAVLFP 192
            P        G P L  TH   P+ PL P L    P  P A+  P
Sbjct: 360 TPPSQATTSLGSPTLQATHSFLPSPPLSP-LATPPPQAPPALALP 403


>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
            sapiens]
          Length = 1691

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 34/89 (38%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 96   LSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKG-PGPA----- 147
            + P GRA +P   G        G PSP RP     L G +  +G  G  G PGP      
Sbjct: 932  MGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGE 991

Query: 148  RGRPCPRCLPGLPGLPITHIRFPAAPLPP 176
             GRP P  LPG PGLP         P PP
Sbjct: 992  AGRPGPPGLPGAPGLPGIIKGVSGKPGPP 1020



 Score = 31.2 bits (69), Expect = 0.57
 Identities = 41/160 (25%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 17   PPRTRGVRTSPRMLVA---------PGQGHTRGVRRGVS-PVAQADPAQDASSFSYSTPV 66
            PP   G+R  P +  +         PG+  ++G+R     P A   P     +      V
Sbjct: 1019 PPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDN---GQTV 1075

Query: 67   QTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGR----ARSPRNGPPLLVSHTGFPSPN 122
            + + +PGP+    E+       R     N+  PG      +   +G   L    GFP   
Sbjct: 1076 EISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVA 1135

Query: 123  RPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGL 162
              R  P L G    G  G  GP  + G   P+  PG PGL
Sbjct: 1136 GMRGEPGLPGSS--GHQGAIGPLGSPGLIGPKGFPGFPGL 1173



 Score = 30.4 bits (67), Expect = 0.98
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 93  PRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPC 152
           P  L P G       G   +    G P P  P P+       L   G  KG   ++G P 
Sbjct: 210 PGPLGPDGNMGLGFQGEKGVKGDVGLPGPAGPPPSTG----ELEFMGFPKGKKGSKGEPG 265

Query: 153 PRCLPGLPGLP 163
           P+  PG+ G P
Sbjct: 266 PKGFPGISGPP 276



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 15/93 (16%)

Query: 72  PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHL 130
           PG +  R +  S        AP  + P G +    + G P+L +  G P           
Sbjct: 509 PGLKGARGDRGSGGAQGPAGAPGLVGPLGPSGPKGKKGEPILSTIQGMPGD--------- 559

Query: 131 LGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
                RG  G +G     G P    +PGLPGLP
Sbjct: 560 -----RGDSGSQGFRGVIGEPGKDGVPGLPGLP 587



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 26/68 (38%), Positives = 26/68 (38%), Gaps = 14/68 (20%)

Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKG----PGPAR-----GRPCPRC--- 155
           GP       GFP P   R  P   G    G  G KG    PG        G P PR    
Sbjct: 664 GPSGFPGTPGFPGPKGSRGLPGTPGQP--GSSGSKGEPGSPGLVHLPELPGFPGPRGEKG 721

Query: 156 LPGLPGLP 163
           LPG PGLP
Sbjct: 722 LPGFPGLP 729



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 27/81 (33%), Positives = 30/81 (37%), Gaps = 12/81 (14%)

Query: 93  PRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLG----HRLRGPGGHKGPGPAR 148
           P  L P G   SP  G P  V   G P  + P       G        G  GH G    R
Sbjct: 791 PGLLGPKGERGSP--GTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTR 848

Query: 149 GRPCP------RCLPGLPGLP 163
           G+  P      + LPGL GLP
Sbjct: 849 GKKGPPGSIVKKGLPGLKGLP 869



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 80  ETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPG 139
           + S S Q F  K  R    P   + P  GP      TG       R  P LLG     P 
Sbjct: 35  DCSGSCQCFPEKGARGRPGPIGIQGP-TGPQGFTGSTGLSGLKGERGFPGLLG-----PY 88

Query: 140 GHKGPGPARGRPCPRCLPGLPGLP 163
           G KG     G P    + G+PG P
Sbjct: 89  GPKGDKGPMGVPGFLGINGIPGHP 112



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 16/81 (19%)

Query: 98  PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR-------------LRGPGGHKGP 144
           P  +    + GPP  +   G P        P L+G +             L GP G KG 
Sbjct: 842 PGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGS 901

Query: 145 GPARGRPCPRCLPGLPGLPIT 165
               G P    +PGLPG+P T
Sbjct: 902 VGFVGFPG---IPGLPGIPGT 919



 Score = 27.3 bits (59), Expect = 8.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 116  TGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
            +G P P      P L G  L+GP G +G   A G+  P  +PG+PG
Sbjct: 1421 SGLPGPPGALGDPGLPG--LQGPPGFEG---APGQQGPFGMPGMPG 1461


>gi|18641360 collectin sub-family member 12 [Homo sapiens]
          Length = 742

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 49/177 (27%), Positives = 61/177 (34%), Gaps = 28/177 (15%)

Query: 17  PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRH 76
           PP  RG R        PG    +G +          PA +        P+  A  PG R 
Sbjct: 444 PPGPRGPRGDRGSQGPPGPTGNKGQKGEKGEPGPPGPAGERG------PIGPAGPPGERG 497

Query: 77  LRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR 136
            +    S        +P    P G +  P  GPP      G P P  P   P   G  L+
Sbjct: 498 GKGSKGSQGPKGSRGSPGKPGPQGPSGDP--GPPGPPGKEGLPGPQGP---PGFQG--LQ 550

Query: 137 GPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVAQVPSRPAAVLFPM 193
           G  G  G       P PR LPGLPG+P      P    PP      P  P+  + P+
Sbjct: 551 GTVGEPGV------PGPRGLPGLPGVP----GMPGPKGPPG-----PPGPSGAVVPL 592


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 49/160 (30%), Positives = 57/160 (35%), Gaps = 12/160 (7%)

Query: 7    DQGESIRPRLP--PRTRGVRTSPRMLVAPGQGHTRGVR-RGVSPVAQADPAQDASSFSYS 63
            D+GE   P  P  P   G    P  L   G   + G   R     A+ DP    +     
Sbjct: 1206 DRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTG 1265

Query: 64   T--PVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP 121
               P   A  PGP  LR    S  Q  R  A     PPG       GPP L    G    
Sbjct: 1266 PVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPV-----GPPGLPGLRGDAGA 1320

Query: 122  NRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
               +  P L+G  L GP G +G    RG P P+  PG  G
Sbjct: 1321 KGEKGHPGLIG--LIGPPGEQGEKGDRGLPGPQGSPGQKG 1358



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 33   PGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATN--PGPRHLRPETSSSKQHFRT 90
            PG+G  RG        A+ D  +D       +P  T  N  PGP   R    S     R 
Sbjct: 1192 PGEGGPRG-----QDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ 1246

Query: 91   KAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARG 149
                    PG   +P + GP       G P P+  R  P  +G + R PG     GP   
Sbjct: 1247 GGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGR-PGATGQAGP--- 1302

Query: 150  RPCPRCLPGLPGL 162
             P P   PGLPGL
Sbjct: 1303 -PGPVGPPGLPGL 1314



 Score = 37.4 bits (85), Expect = 0.008
 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 73  GPRHLRPETSSSKQHFRTKAPRNL-SPPG-RARSPRNGPPLLVSHTGFPSPNRPRPAPHL 130
           GPR L P  S  +     K P  +  PPG R      GP   +   G P P   +  P  
Sbjct: 512 GPRGL-PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 570

Query: 131 LGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            G  L GP G  GP   +G   P+  PGLPG+P
Sbjct: 571 QG--LPGPQGAIGPHGEKG---PQGKPGLPGMP 598



 Score = 37.0 bits (84), Expect = 0.010
 Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 10/141 (7%)

Query: 32   APGQGHTRGVRRGVSPVAQAD---PAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHF 88
            A G   TRG      P+       P+ +        P+     PGPR       +     
Sbjct: 1053 AKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQG 1112

Query: 89   RTKAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-GPGGHKGP-- 144
                  NL PPG    P  +G P +    G   P   R      G     GP G KGP  
Sbjct: 1113 PPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTG 1172

Query: 145  --GPARGRPCPRCLPGLPGLP 163
              GP +G P P   PG PG P
Sbjct: 1173 DDGP-KGNPGPVGFPGDPGPP 1192



 Score = 35.0 bits (79), Expect = 0.040
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 98  PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP 157
           PPG+   P  G P      GF     P   P ++G +  G  G  GP   RG P P   P
Sbjct: 810 PPGKDGLP--GHPGQRGEVGFQGKTGPPGPPGVVGPQ--GAAGETGPMGERGHPGPPGPP 865

Query: 158 GLPGLPIT 165
           G  GLP T
Sbjct: 866 GEQGLPGT 873



 Score = 32.3 bits (72), Expect = 0.26
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 96  LSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR 154
           L  PG    P R GP   +   GFP  +  + A  L G    GP G +GP   RG+  PR
Sbjct: 709 LGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKS--GPRGERGPTGPRGQRGPR 766

Query: 155 CLPGLPG 161
              G  G
Sbjct: 767 GATGKSG 773



 Score = 30.4 bits (67), Expect = 0.98
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 101 RARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR-------LRGPGGHKG-PGPA--RGR 150
           +AR    GPP  + +TG P P     +P L G          RGP G  G PG A  RGR
Sbjct: 394 QARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGR 453

Query: 151 PCPRCLPGLPGLP 163
                  G+PG P
Sbjct: 454 AGADGARGMPGDP 466



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 38/131 (29%), Positives = 51/131 (38%), Gaps = 27/131 (20%)

Query: 78  RPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFP---SPNRPR--------P 126
           R + S  +Q  R   P+N  P  +  +P     +L S    P   + + PR        P
Sbjct: 243 RAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGEKGEP 302

Query: 127 APHLLGHRLRGPGGHKGP----GPA--RGRPCP------RCLPGLPGLPITHIRFPAAPL 174
           A    G  + GP G +GP    GP   +G P P      R  PG  GLP +      AP 
Sbjct: 303 AVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGS----DGAPG 358

Query: 175 PPRLVAQVPSR 185
           PP     +P R
Sbjct: 359 PPGTSLMLPFR 369



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 46/167 (27%), Positives = 56/167 (33%), Gaps = 37/167 (22%)

Query: 22   GVRTSPRMLVAPGQGHTRGVR--RGVS-------PVAQADPAQDASSFSYSTPVQTATNP 72
            G   SP +   PG    RG R  +G S       P     P  D        PV    +P
Sbjct: 1130 GESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1189

Query: 73   GPRHLRPETSSSKQHFRTKAPRNLS-PPGRARSP----RNGPPLLVSHTGFPSPNRPRPA 127
            GP    P     +     K  R     PG+  SP     NGPP  +   G      P  +
Sbjct: 1190 GP----PGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRG------PAGS 1239

Query: 128  PHLLGHR-----------LRGPG--GHKGPGPARGRPCPRCLPGLPG 161
            P   G +           +  PG  G  GP    G+P P  L GLPG
Sbjct: 1240 PGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1286



 Score = 27.7 bits (60), Expect = 6.3
 Identities = 24/77 (31%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 98  PPG----RARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-------GPGGHKGPGP 146
           PPG    +  +   GP     H G P P   +  P   G           G  G  GP  
Sbjct: 837 PPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAG 896

Query: 147 ARGRPCPRCLPGLPGLP 163
            RG P  R LPG  G P
Sbjct: 897 LRGFPGERGLPGTAGGP 913


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
            sapiens]
          Length = 1629

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 49/160 (30%), Positives = 57/160 (35%), Gaps = 12/160 (7%)

Query: 7    DQGESIRPRLP--PRTRGVRTSPRMLVAPGQGHTRGVR-RGVSPVAQADPAQDASSFSYS 63
            D+GE   P  P  P   G    P  L   G   + G   R     A+ DP    +     
Sbjct: 1185 DRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTG 1244

Query: 64   T--PVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP 121
               P   A  PGP  LR    S  Q  R  A     PPG       GPP L    G    
Sbjct: 1245 PVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPV-----GPPGLPGLRGDAGA 1299

Query: 122  NRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
               +  P L+G  L GP G +G    RG P P+  PG  G
Sbjct: 1300 KGEKGHPGLIG--LIGPPGEQGEKGDRGLPGPQGSPGQKG 1337



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 33   PGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATN--PGPRHLRPETSSSKQHFRT 90
            PG+G  RG        A+ D  +D       +P  T  N  PGP   R    S     R 
Sbjct: 1171 PGEGGPRG-----QDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ 1225

Query: 91   KAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARG 149
                    PG   +P + GP       G P P+  R  P  +G + R PG     GP   
Sbjct: 1226 GGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGR-PGATGQAGP--- 1281

Query: 150  RPCPRCLPGLPGL 162
             P P   PGLPGL
Sbjct: 1282 -PGPVGPPGLPGL 1293



 Score = 37.4 bits (85), Expect = 0.008
 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 73  GPRHLRPETSSSKQHFRTKAPRNL-SPPG-RARSPRNGPPLLVSHTGFPSPNRPRPAPHL 130
           GPR L P  S  +     K P  +  PPG R      GP   +   G P P   +  P  
Sbjct: 491 GPRGL-PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 549

Query: 131 LGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            G  L GP G  GP   +G   P+  PGLPG+P
Sbjct: 550 QG--LPGPQGAIGPHGEKG---PQGKPGLPGMP 577



 Score = 37.0 bits (84), Expect = 0.010
 Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 10/141 (7%)

Query: 32   APGQGHTRGVRRGVSPVAQAD---PAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHF 88
            A G   TRG      P+       P+ +        P+     PGPR       +     
Sbjct: 1032 AKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQG 1091

Query: 89   RTKAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-GPGGHKGP-- 144
                  NL PPG    P  +G P +    G   P   R      G     GP G KGP  
Sbjct: 1092 PPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTG 1151

Query: 145  --GPARGRPCPRCLPGLPGLP 163
              GP +G P P   PG PG P
Sbjct: 1152 DDGP-KGNPGPVGFPGDPGPP 1171



 Score = 35.0 bits (79), Expect = 0.040
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 98  PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP 157
           PPG+   P  G P      GF     P   P ++G +  G  G  GP   RG P P   P
Sbjct: 789 PPGKDGLP--GHPGQRGEVGFQGKTGPPGPPGVVGPQ--GAAGETGPMGERGHPGPPGPP 844

Query: 158 GLPGLPIT 165
           G  GLP T
Sbjct: 845 GEQGLPGT 852



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 36/120 (30%), Positives = 45/120 (37%), Gaps = 26/120 (21%)

Query: 78  RPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPR------PAPHLL 131
           R + S  +Q  R   P+N  P  +A    +GP  L    G P+   P       P P   
Sbjct: 243 RAQRSPQQQPSRLHRPQNQEPQSQAA---HGPRGLKGEKGEPAVLEPGMLVEGPPGPE-- 297

Query: 132 GHRLRGPGGHKGPGPARGRPCP------RCLPGLPGLPITHIRFPAAPLPPRLVAQVPSR 185
                GP G  GP   +G P P      R  PG  GLP +      AP PP     +P R
Sbjct: 298 -----GPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGS----DGAPGPPGTSLMLPFR 348



 Score = 32.3 bits (72), Expect = 0.26
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 96  LSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR 154
           L  PG    P R GP   +   GFP  +  + A  L G    GP G +GP   RG+  PR
Sbjct: 688 LGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKS--GPRGERGPTGPRGQRGPR 745

Query: 155 CLPGLPG 161
              G  G
Sbjct: 746 GATGKSG 752



 Score = 30.4 bits (67), Expect = 0.98
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 101 RARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR-------LRGPGGHKG-PGPA--RGR 150
           +AR    GPP  + +TG P P     +P L G          RGP G  G PG A  RGR
Sbjct: 373 QARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGR 432

Query: 151 PCPRCLPGLPGLP 163
                  G+PG P
Sbjct: 433 AGADGARGMPGDP 445



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 46/167 (27%), Positives = 56/167 (33%), Gaps = 37/167 (22%)

Query: 22   GVRTSPRMLVAPGQGHTRGVR--RGVS-------PVAQADPAQDASSFSYSTPVQTATNP 72
            G   SP +   PG    RG R  +G S       P     P  D        PV    +P
Sbjct: 1109 GESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1168

Query: 73   GPRHLRPETSSSKQHFRTKAPRNLS-PPGRARSP----RNGPPLLVSHTGFPSPNRPRPA 127
            GP    P     +     K  R     PG+  SP     NGPP  +   G      P  +
Sbjct: 1169 GP----PGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRG------PAGS 1218

Query: 128  PHLLGHR-----------LRGPG--GHKGPGPARGRPCPRCLPGLPG 161
            P   G +           +  PG  G  GP    G+P P  L GLPG
Sbjct: 1219 PGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1265



 Score = 27.7 bits (60), Expect = 6.3
 Identities = 24/77 (31%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 98  PPG----RARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-------GPGGHKGPGP 146
           PPG    +  +   GP     H G P P   +  P   G           G  G  GP  
Sbjct: 816 PPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAG 875

Query: 147 ARGRPCPRCLPGLPGLP 163
            RG P  R LPG  G P
Sbjct: 876 LRGFPGERGLPGTAGGP 892


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 49/160 (30%), Positives = 57/160 (35%), Gaps = 12/160 (7%)

Query: 7    DQGESIRPRLP--PRTRGVRTSPRMLVAPGQGHTRGVR-RGVSPVAQADPAQDASSFSYS 63
            D+GE   P  P  P   G    P  L   G   + G   R     A+ DP    +     
Sbjct: 1292 DRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTG 1351

Query: 64   T--PVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP 121
               P   A  PGP  LR    S  Q  R  A     PPG       GPP L    G    
Sbjct: 1352 PVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPV-----GPPGLPGLRGDAGA 1406

Query: 122  NRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
               +  P L+G  L GP G +G    RG P P+  PG  G
Sbjct: 1407 KGEKGHPGLIG--LIGPPGEQGEKGDRGLPGPQGSPGQKG 1444



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 33   PGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATN--PGPRHLRPETSSSKQHFRT 90
            PG+G  RG        A+ D  +D       +P  T  N  PGP   R    S     R 
Sbjct: 1278 PGEGGPRG-----QDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ 1332

Query: 91   KAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARG 149
                    PG   +P + GP       G P P+  R  P  +G + R PG     GP   
Sbjct: 1333 GGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGR-PGATGQAGP--- 1388

Query: 150  RPCPRCLPGLPGL 162
             P P   PGLPGL
Sbjct: 1389 -PGPVGPPGLPGL 1400



 Score = 37.4 bits (85), Expect = 0.008
 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 73  GPRHLRPETSSSKQHFRTKAPRNL-SPPG-RARSPRNGPPLLVSHTGFPSPNRPRPAPHL 130
           GPR L P  S  +     K P  +  PPG R      GP   +   G P P   +  P  
Sbjct: 598 GPRGL-PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 656

Query: 131 LGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            G  L GP G  GP   +G   P+  PGLPG+P
Sbjct: 657 QG--LPGPQGAIGPHGEKG---PQGKPGLPGMP 684



 Score = 37.0 bits (84), Expect = 0.010
 Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 10/141 (7%)

Query: 32   APGQGHTRGVRRGVSPVAQAD---PAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHF 88
            A G   TRG      P+       P+ +        P+     PGPR       +     
Sbjct: 1139 AKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQG 1198

Query: 89   RTKAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-GPGGHKGP-- 144
                  NL PPG    P  +G P +    G   P   R      G     GP G KGP  
Sbjct: 1199 PPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTG 1258

Query: 145  --GPARGRPCPRCLPGLPGLP 163
              GP +G P P   PG PG P
Sbjct: 1259 DDGP-KGNPGPVGFPGDPGPP 1278



 Score = 35.0 bits (79), Expect = 0.040
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 98  PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP 157
           PPG+   P  G P      GF     P   P ++G +  G  G  GP   RG P P   P
Sbjct: 896 PPGKDGLP--GHPGQRGEVGFQGKTGPPGPPGVVGPQ--GAAGETGPMGERGHPGPPGPP 951

Query: 158 GLPGLPIT 165
           G  GLP T
Sbjct: 952 GEQGLPGT 959



 Score = 32.3 bits (72), Expect = 0.26
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 96  LSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR 154
           L  PG    P R GP   +   GFP  +  + A  L G    GP G +GP   RG+  PR
Sbjct: 795 LGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKS--GPRGERGPTGPRGQRGPR 852

Query: 155 CLPGLPG 161
              G  G
Sbjct: 853 GATGKSG 859



 Score = 30.4 bits (67), Expect = 0.98
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 101 RARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR-------LRGPGGHKG-PGPA--RGR 150
           +AR    GPP  + +TG P P     +P L G          RGP G  G PG A  RGR
Sbjct: 480 QARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGR 539

Query: 151 PCPRCLPGLPGLP 163
                  G+PG P
Sbjct: 540 AGADGARGMPGDP 552



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 42/129 (32%), Positives = 50/129 (38%), Gaps = 22/129 (17%)

Query: 59  SFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN-GPPLLVSHTG 117
           ++ Y    +  T  GP  L  ET+ S        PR L   G    P    P +LV   G
Sbjct: 347 TYGYGDDYREETELGPA-LSAETAHSGA--AAHGPRGLK--GEKGEPAVLEPGMLVE--G 399

Query: 118 FPSPNRPRPAPHLLGHRLRGPGGHKG-PGPARGRPCPRCLPGLPGLPITHIRFPAAPLPP 176
            P P  P          L GP G +G PGP  G P  R  PG  GLP +      AP PP
Sbjct: 400 PPGPEGPAG--------LIGPPGIQGNPGPV-GDPGERGPPGRAGLPGS----DGAPGPP 446

Query: 177 RLVAQVPSR 185
                +P R
Sbjct: 447 GTSLMLPFR 455



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 46/167 (27%), Positives = 56/167 (33%), Gaps = 37/167 (22%)

Query: 22   GVRTSPRMLVAPGQGHTRGVR--RGVS-------PVAQADPAQDASSFSYSTPVQTATNP 72
            G   SP +   PG    RG R  +G S       P     P  D        PV    +P
Sbjct: 1216 GESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1275

Query: 73   GPRHLRPETSSSKQHFRTKAPRNLS-PPGRARSP----RNGPPLLVSHTGFPSPNRPRPA 127
            GP    P     +     K  R     PG+  SP     NGPP  +   G      P  +
Sbjct: 1276 GP----PGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRG------PAGS 1325

Query: 128  PHLLGHR-----------LRGPG--GHKGPGPARGRPCPRCLPGLPG 161
            P   G +           +  PG  G  GP    G+P P  L GLPG
Sbjct: 1326 PGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1372



 Score = 27.7 bits (60), Expect = 6.3
 Identities = 24/77 (31%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 98  PPG----RARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-------GPGGHKGPGP 146
           PPG    +  +   GP     H G P P   +  P   G           G  G  GP  
Sbjct: 923 PPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAG 982

Query: 147 ARGRPCPRCLPGLPGLP 163
            RG P  R LPG  G P
Sbjct: 983 LRGFPGERGLPGTAGGP 999


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 57/206 (27%), Positives = 72/206 (34%), Gaps = 49/206 (23%)

Query: 17  PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRH 76
           PP    + +SP    AP  G TR  R    P A   P    +S   + P        P  
Sbjct: 481 PPPFTALSSSP----APTPGSTRSTR----PPATMVPPTSGTSTPRTAPAVPTPGSAPTG 532

Query: 77  LRPETSS--SKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAP------ 128
            +    S  SK+     +PR   P    ++ R+ P  L   T  PSP +P+P+       
Sbjct: 533 SKKPIGSEASKKAGPKSSPRKPVPLRPGKAARDVP--LSDLTTRPSPRQPQPSQQTTPAL 590

Query: 129 ----------------------HLLGHR----LRGPGGHKGPGPARGRPCPRCLPGLPGL 162
                                 HL G      L GP G KG     G P P  LPGLPG+
Sbjct: 591 VLAPAQFLSSSPRPTSSGYSIFHLAGSTPFPLLMGPPGPKGDC---GLPGPPGLPGLPGI 647

Query: 163 PITHIRFPAAPLPPRLVAQVPSRPAA 188
           P    R P  P  P     +P  P A
Sbjct: 648 P--GARGPRGPPGPYGNPGLPGPPGA 671



 Score = 33.9 bits (76), Expect = 0.088
 Identities = 47/154 (30%), Positives = 61/154 (39%), Gaps = 25/154 (16%)

Query: 17   PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQ-----DASSFSYSTPVQTATN 71
            PP  +G    P  L  PG+  T G R G+ P  Q +P       D+    +         
Sbjct: 1488 PPGFKGESGLPGQLGPPGKRGTEG-RTGL-PGNQGEPGSKGQPGDSGEMGFPGMAGLFGP 1545

Query: 72   PGPRHLRPETSSSKQHFRTKAPRNLSPPG-RARSPRNGPPLLVSHTGFPSPNRPRPAPHL 130
             GP    P     K     + PR   PPG   +    GP  ++  +G P P   + +   
Sbjct: 1546 KGP----PGDIGFKG---IQGPRG--PPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGD 1596

Query: 131  LGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPI 164
             G  L+GP G  GP   RGRP P   PG PG PI
Sbjct: 1597 WG--LQGPRGPPGP---RGRPGP---PGPPGGPI 1622



 Score = 31.2 bits (69), Expect = 0.57
 Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 14/95 (14%)

Query: 72  PGPRHLRPETSSSKQHFRT------KAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPR 125
           P  R L P TSSSK+   T      K   + S P  AR+  + PP   + +  P+P    
Sbjct: 438 PSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSPAPTPG- 496

Query: 126 PAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLP 160
                   R   P     P P  G   PR  P +P
Sbjct: 497 ------STRSTRPPATMVP-PTSGTSTPRTAPAVP 524



 Score = 31.2 bits (69), Expect = 0.57
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 117 GFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
           GFP P  P   P  +G     P G  GP   +G+P  R LPG  G
Sbjct: 901 GFPGPPGPEGFPGDIG-----PPGDNGPEGMKGKPGARGLPGPRG 940



 Score = 30.4 bits (67), Expect = 0.98
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 93   PRNLSPPGRA-----RSPR--NGPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKGP 144
            P +  PPG       R PR  +GP       G   P  P+  P   G + + G  GH G 
Sbjct: 1050 PGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGS 1109

Query: 145  GPARGRPCPRCLPGLPGLP 163
                G P P   PG  GLP
Sbjct: 1110 RGFPGIPGPSGPPGTKGLP 1128



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 41/157 (26%), Positives = 57/157 (36%), Gaps = 15/157 (9%)

Query: 17  PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPR- 75
           PP  +G +  P +  +PG+ H         P    +P           P   A +PG + 
Sbjct: 668 PPGAKGQKGDPGL--SPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYP-GPAGHPGEQG 724

Query: 76  HLRPETSSSKQHF--RTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGH 133
              PE S   + +  R   P  +  PG   S   G   L    G P  +  R  P + G 
Sbjct: 725 QPGPEGSPGAKGYPGRQGLPGPVGDPGPKGS--RGYIGLPGLFGLPGSDGERGLPGVPGK 782

Query: 134 RLR-------GPGGHKGPGPARGRPCPRCLPGLPGLP 163
           R +       G  G +GP    G P    LPG PG+P
Sbjct: 783 RGKMGMPGFPGVFGERGPPGLDGNPGELGLPGPPGVP 819



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 24/85 (28%)

Query: 96   LSPPGRARSPRNGPPLLVSHTGFP----SPNRPRPA--------PHLLGHRLR------- 136
            + PPG       GP   + H G P    +P  P P         P + G + R       
Sbjct: 1017 MGPPGVP-----GPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPD 1071

Query: 137  GPGGHKGPGPARGRPCPRCLPGLPG 161
            GP G +G    +G P P+  PG PG
Sbjct: 1072 GPAGEQGSRGLKGPPGPQGRPGRPG 1096



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 40/148 (27%), Positives = 53/148 (35%), Gaps = 31/148 (20%)

Query: 14   PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPG 73
            P+ PP +RG          PG    +G RRG  P     PA +  S     P      PG
Sbjct: 1046 PQGPPGSRG---------PPGMRGAKG-RRG--PRGPDGPAGEQGSRGLKGPPGPQGRPG 1093

Query: 74   PRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGH 133
             R  +   +  + H  ++    +  P       +GPP      G P P  P+        
Sbjct: 1094 -RPGQQGVAGERGHLGSRGFPGIPGP-------SGPPGTKGLPGEPGPQGPQGPI----- 1140

Query: 134  RLRGPGGHKGPGPARGRPCPRCLPGLPG 161
               GP G  GP   +G P     PGLPG
Sbjct: 1141 ---GPPGEMGP---KGPPGAVGEPGLPG 1162



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 93  PRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPC 152
           P ++ PPG      NGP  +    G  +   P P   L      GP G  G     G+P 
Sbjct: 912 PGDIGPPGD-----NGPEGMKGKPG--ARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPG 964

Query: 153 PRCLPGLPGL 162
            +  PG PGL
Sbjct: 965 RKGFPGRPGL 974



 Score = 27.7 bits (60), Expect = 6.3
 Identities = 52/193 (26%), Positives = 66/193 (34%), Gaps = 36/193 (18%)

Query: 2   PRDSPDQGESIRP--RLPPRTRGVRTSPRMLVA---PGQGHTRGVRRGVSPVAQADPAQD 56
           P  +P    S RP   + P T G  T PR   A   PG   T G ++ +   A +  A  
Sbjct: 491 PAPTPGSTRSTRPPATMVPPTSGTST-PRTAPAVPTPGSAPT-GSKKPIGSEA-SKKAGP 547

Query: 57  ASSFSYSTPVQTA------------TNPGPRHLRPETSSSKQ------HFRTKAPRNLSP 98
            SS     P++              T P PR  +P   ++         F + +PR  S 
Sbjct: 548 KSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAPAQFLSSSPRPTSS 607

Query: 99  -------PGRARSPR-NGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGR 150
                   G    P   GPP      G P P      P + G   RGP G  GP    G 
Sbjct: 608 GYSIFHLAGSTPFPLLMGPPGPKGDCGLPGPPGLPGLPGIPG--ARGPRGPPGPYGNPGL 665

Query: 151 PCPRCLPGLPGLP 163
           P P    G  G P
Sbjct: 666 PGPPGAKGQKGDP 678



 Score = 27.7 bits (60), Expect = 6.3
 Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
           GP       G P  N P       G R L GP G  GP    G   P   PGL G P
Sbjct: 907 GPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQP 963


>gi|77681565 NG5 protein [Homo sapiens]
          Length = 306

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 44/147 (29%), Positives = 49/147 (33%), Gaps = 29/147 (19%)

Query: 52  DPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPL 111
           D     S   Y+ P   A  P P    P+ + S  H       +    G A  PR G   
Sbjct: 10  DSVPHTSPPPYNAPQPPAEPPAPP---PQAAPSSHHHHH---HHYHQSGTATLPRLGAGG 63

Query: 112 LVSHTGFP------SPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRC-----LPGLP 160
           L S           S   PRP PH           H  PGPA G P P C     +P  P
Sbjct: 64  LASSAATAQRGPSSSATLPRP-PH-----------HAPPGPAAGAPPPGCATLPRMPPDP 111

Query: 161 GLPITHIRFPAAPLPPRLVAQVPSRPA 187
            L  T    P  P PP   A  P  PA
Sbjct: 112 YLQETRFEGPLPPPPPAAAAPPPPAPA 138


>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
            sapiens]
          Length = 1690

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 34/89 (38%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 96   LSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKG-PGPA----- 147
            + P GRA +P   G        G PSP RP     L G +  +G  G  G PGP      
Sbjct: 931  MGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGE 990

Query: 148  RGRPCPRCLPGLPGLPITHIRFPAAPLPP 176
             GRP P  LPG PGLP         P PP
Sbjct: 991  AGRPGPPGLPGAPGLPGIIKGVSGKPGPP 1019



 Score = 31.2 bits (69), Expect = 0.57
 Identities = 41/160 (25%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 17   PPRTRGVRTSPRMLVA---------PGQGHTRGVRRGVS-PVAQADPAQDASSFSYSTPV 66
            PP   G+R  P +  +         PG+  ++G+R     P A   P     +      V
Sbjct: 1018 PPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDN---GQTV 1074

Query: 67   QTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGR----ARSPRNGPPLLVSHTGFPSPN 122
            + + +PGP+    E+       R     N+  PG      +   +G   L    GFP   
Sbjct: 1075 EISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVA 1134

Query: 123  RPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGL 162
              R  P L G    G  G  GP  + G   P+  PG PGL
Sbjct: 1135 GMRGEPGLPGSS--GHQGAIGPLGSPGLIGPKGFPGFPGL 1172



 Score = 30.4 bits (67), Expect = 0.98
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 93  PRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPC 152
           P  L P G       G   +    G P P  P P+       L   G  KG   ++G P 
Sbjct: 209 PGPLGPDGNMGLGFQGEKGVKGDVGLPGPAGPPPSTG----ELEFMGFPKGKKGSKGEPG 264

Query: 153 PRCLPGLPGLP 163
           P+  PG+ G P
Sbjct: 265 PKGFPGISGPP 275



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 15/93 (16%)

Query: 72  PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHL 130
           PG +  R +  S        AP  + P G +    + G P+L +  G P           
Sbjct: 508 PGLKGARGDRGSGGAQGPAGAPGLVGPLGPSGPKGKKGEPILSTIQGMPGD--------- 558

Query: 131 LGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
                RG  G +G     G P    +PGLPGLP
Sbjct: 559 -----RGDSGSQGFRGVIGEPGKDGVPGLPGLP 586



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 26/68 (38%), Positives = 26/68 (38%), Gaps = 14/68 (20%)

Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKG----PGPAR-----GRPCPRC--- 155
           GP       GFP P   R  P   G    G  G KG    PG        G P PR    
Sbjct: 663 GPSGFPGTPGFPGPKGSRGLPGTPGQP--GSSGSKGEPGSPGLVHLPELPGFPGPRGEKG 720

Query: 156 LPGLPGLP 163
           LPG PGLP
Sbjct: 721 LPGFPGLP 728



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 27/81 (33%), Positives = 30/81 (37%), Gaps = 12/81 (14%)

Query: 93  PRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLG----HRLRGPGGHKGPGPAR 148
           P  L P G   SP  G P  V   G P  + P       G        G  GH G    R
Sbjct: 790 PGLLGPKGERGSP--GTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTR 847

Query: 149 GRPCP------RCLPGLPGLP 163
           G+  P      + LPGL GLP
Sbjct: 848 GKKGPPGSIVKKGLPGLKGLP 868



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 80  ETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPG 139
           + S S Q F  K  R    P   + P  GP      TG       R  P LLG     P 
Sbjct: 34  DCSGSCQCFPEKGARGRPGPIGIQGP-TGPQGFTGSTGLSGLKGERGFPGLLG-----PY 87

Query: 140 GHKGPGPARGRPCPRCLPGLPGLP 163
           G KG     G P    + G+PG P
Sbjct: 88  GPKGDKGPMGVPGFLGINGIPGHP 111



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 16/81 (19%)

Query: 98  PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR-------------LRGPGGHKGP 144
           P  +    + GPP  +   G P        P L+G +             L GP G KG 
Sbjct: 841 PGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGS 900

Query: 145 GPARGRPCPRCLPGLPGLPIT 165
               G P    +PGLPG+P T
Sbjct: 901 VGFVGFPG---IPGLPGIPGT 918



 Score = 27.3 bits (59), Expect = 8.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 116  TGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
            +G P P      P L G  L+GP G +G   A G+  P  +PG+PG
Sbjct: 1420 SGLPGPPGALGDPGLPG--LQGPPGFEG---APGQQGPFGMPGMPG 1460


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 24/118 (20%)

Query: 69  ATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAP 128
           + +P PR  + ETS   +  R+ +P    P  R RSP   PP     T  P P R  P+P
Sbjct: 528 SASPSPRKRQKETSPRGRRRRSPSP---PPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSP 584

Query: 129 HLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVAQVPSRP 186
                    P   + P P R  P           PI   R+  +P P R  A  P  P
Sbjct: 585 ---------PPRRRSPSPRRYSP-----------PIQR-RYSPSPPPKRRTASPPPPP 621



 Score = 36.2 bits (82), Expect = 0.018
 Identities = 54/203 (26%), Positives = 67/203 (33%), Gaps = 34/203 (16%)

Query: 2   PRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFS 61
           P  +P       P  PPR R     PR             RR  SP   + P Q   S S
Sbjct: 561 PSPAPPPRRRRTPTPPPRRRTPSPPPR-------------RRSPSPRRYSPPIQRRYSPS 607

Query: 62  YSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP---RNGPPLLVSHTGF 118
                +TA+ P P   R   S   +   + +P    PP +  SP   R  P L   H   
Sbjct: 608 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSP----PPKQRSSPVTKRRSPSLSSKHRKG 663

Query: 119 PSPNR-------PRP-APHLLGHRLRGPGGHKGPGPAR----GRPCPRCLPGLPGLPITH 166
            SP+R       P+P   H    R R P     P P R      P  R  P     PI  
Sbjct: 664 SSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIR- 722

Query: 167 IRFPAAPLPPRLVAQVPSRPAAV 189
            R    P P ++       P +V
Sbjct: 723 -RVSRTPEPKKIKKAASPSPQSV 744



 Score = 34.3 bits (77), Expect = 0.068
 Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 12/124 (9%)

Query: 5   SPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYST 64
           SP +  S R R  PR R   T PR +  P +      RR  SPV +   +  + S S S+
Sbjct: 310 SPRRRPSPRRRPSPRRR---TPPRRMPPPPRH-----RRSRSPVRRRRRSSASLSGSSSS 361

Query: 65  PVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRAR--SPRNGPPLLVSHTGFP-SP 121
              + +   P+     TSS  +  R  +P + SPP R    SP   PP    H+  P   
Sbjct: 362 SSSSRSRSPPKKPPKRTSSPPRKTRRLSP-SASPPRRRHRPSPPATPPPKTRHSPTPQQS 420

Query: 122 NRPR 125
           NR R
Sbjct: 421 NRTR 424



 Score = 32.3 bits (72), Expect = 0.26
 Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 18/114 (15%)

Query: 18  PRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHL 77
           PR R   TSPR       G  R   R  SP     P +   S S + P +    P P   
Sbjct: 533 PRKRQKETSPR-------GRRR---RSPSP----PPTRRRRSPSPAPPPRRRRTPTPPPR 578

Query: 78  RPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNR---PRPAP 128
           R  T S     R+ +PR  SPP + R   + PP   + +  P P R   P P P
Sbjct: 579 R-RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPP 631



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 43/180 (23%), Positives = 60/180 (33%), Gaps = 14/180 (7%)

Query: 5   SPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYST 64
           SP     +    PP+ R    + R   +    H +G     S      P  +        
Sbjct: 628 SPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPR 687

Query: 65  PVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRP 124
           P    T+  P  +R   SSS Q  R ++P   + P R R  R   P  +     PSP   
Sbjct: 688 PRAPQTSSSPPPVRRGASSSPQ--RRQSPSPSTRPIR-RVSRTPEPKKIKKAASPSPQSV 744

Query: 125 RPAPHLLGHRLRG---PGGHKGPGPARGRPCPRCLPGL---PGLPITHIRFPA-APLPPR 177
           R         + G   P   K P P    P     P     P +P+   + P  +P PPR
Sbjct: 745 RRVSS--SRSVSGSPEPAAKKPPAPP--SPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPR 800


>gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo
           sapiens]
          Length = 267

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 43/128 (33%), Positives = 53/128 (41%), Gaps = 18/128 (14%)

Query: 18  PRTRGVRTSPRMLVA--PGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPR 75
           P TRG   + R   A  PG G  R    G SP       Q    F+   P+Q  TN    
Sbjct: 144 PETRGGVPARRRETANPPGPGRARP---GGSPFGHRPLLQPRQIFA---PLQAITNQVRP 197

Query: 76  HLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNR----PRPAPHLL 131
             RPE   +    R+   R    PGR RSP++ P    + +G  S +R    PR AP   
Sbjct: 198 QQRPEPPPAGSAARSG--RRAQRPGRKRSPQSAP----AESGELSIDREEGGPRQAPQGA 251

Query: 132 GHRLRGPG 139
           GH L G G
Sbjct: 252 GHALEGRG 259


>gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo
           sapiens]
          Length = 248

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 43/128 (33%), Positives = 53/128 (41%), Gaps = 18/128 (14%)

Query: 18  PRTRGVRTSPRMLVA--PGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPR 75
           P TRG   + R   A  PG G  R    G SP       Q    F+   P+Q  TN    
Sbjct: 125 PETRGGVPARRRETANPPGPGRARP---GGSPFGHRPLLQPRQIFA---PLQAITNQVRP 178

Query: 76  HLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNR----PRPAPHLL 131
             RPE   +    R+   R    PGR RSP++ P    + +G  S +R    PR AP   
Sbjct: 179 QQRPEPPPAGSAARSG--RRAQRPGRKRSPQSAP----AESGELSIDREEGGPRQAPQGA 232

Query: 132 GHRLRGPG 139
           GH L G G
Sbjct: 233 GHALEGRG 240


>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
           sapiens]
          Length = 606

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 43/154 (27%), Positives = 57/154 (37%), Gaps = 24/154 (15%)

Query: 17  PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRH 76
           PP  RG +    +    G    +G    + P+    P         + PV      GPR 
Sbjct: 461 PPGPRGFKGDMGVKGPVGGRGPKGDPGSLGPLGPQGPQGQPGE---AGPVGERGPVGPRG 517

Query: 77  LRPETSSSKQHFRTKAPR-------NLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPH 129
             P    SK  F T  PR       ++ PPG       GPP      G P P+ P+  P 
Sbjct: 518 F-PGLKGSKGSFGTGGPRGQPGPKGDIGPPGP-----EGPP------GSPGPSGPQGKPG 565

Query: 130 LLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
           + G    G  G +G    +G P  +  PGLPG P
Sbjct: 566 IAGKT--GSPGQRGAMGPKGEPGIQGPPGLPGPP 597


>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
          Length = 1047

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 40/142 (28%), Positives = 53/142 (37%), Gaps = 24/142 (16%)

Query: 70  TNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPH 129
           T P PR+ +   S       T+  + L PP +   P + PP    H   P P +  P P 
Sbjct: 231 TGPYPRNSKQAMSEGPSSPWTQLAQPLGPPCQDTGPTHYPP---PHHPPPHPPQALPCPP 287

Query: 130 LLGH-----------RLRGPGGHKGPGPARG-------RPCPRCLPGLPGLPITHIRFPA 171
              H            L+  GGHKG G   G       R      P +P L +    +P+
Sbjct: 288 ACRHPEKQGSYSPALPLQPLGGHKGTGYQAGGLGSPYLRQQAAQAPYIPPLGLDAYPYPS 347

Query: 172 APLP---PRLVAQVPSRPAAVL 190
           APLP   P L  + P  P   L
Sbjct: 348 APLPAPSPGLKLEPPLTPRCPL 369


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 56/194 (28%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 2    PRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFS 61
            P    D+GE+  P  PP   G   +P  +   G+   RG      P   A P     +  
Sbjct: 1030 PGAKGDRGET-GPAGPPGAPGAPGAPGPVGPAGKSGDRGE---TGPAGPAGPVGPVGARG 1085

Query: 62   YSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLS----PPGRARSPRNGPPLLVSHTG 117
             + P       GPR  + ET         K  R  S    PPG   SP    P     +G
Sbjct: 1086 PAGP------QGPRGDKGETGEQGDR-GIKGHRGFSGLQGPPGPPGSPGEQGP-----SG 1133

Query: 118  FPSPNRPRPAPHLLG-------HRLRGPGGHKGP-------GPARGRPCPRCLPGLPGLP 163
               P  PR  P   G       + L GP G  GP       GP  G P P   PG PG P
Sbjct: 1134 ASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPV-GPPGPPGPPGPPGPP 1192

Query: 164  ITHIRFPAAPLPPR 177
                 F   P PP+
Sbjct: 1193 SAGFDFSFLPQPPQ 1206



 Score = 35.4 bits (80), Expect = 0.030
 Identities = 45/160 (28%), Positives = 54/160 (33%), Gaps = 15/160 (9%)

Query: 32  APGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTK 91
           APG    RG            P   A    +   V      GP+   P  S   Q  R +
Sbjct: 315 APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQG--PRGSEGPQGVRGE 372

Query: 92  APRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR----LRGPGGHKGPGPA 147
                 PPG A +   GP       G P       AP + G       RGP G +GPG  
Sbjct: 373 P----GPPGPAGAA--GPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPG-- 424

Query: 148 RGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVAQVPSRPA 187
            G P P+   G PG P +     A   P  +  Q P  PA
Sbjct: 425 -GPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463



 Score = 35.4 bits (80), Expect = 0.030
 Identities = 43/168 (25%), Positives = 48/168 (28%), Gaps = 24/168 (14%)

Query: 18  PRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHL 77
           P   G R  P     PG     G +          PA    S   +     A  PG + L
Sbjct: 481 PGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL 540

Query: 78  RPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTG---FPSPNRPRPAPHLLGHR 134
                S     +T  P      GR   P  GPP      G   FP P      P   G R
Sbjct: 541 TGSPGSPGPDGKTGPPGPAGQDGRPGPP--GPPGARGQAGVMGFPGPKGAAGEPGKAGER 598

Query: 135 -------------------LRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
                               +GP G  GP   RG   P   PG  GLP
Sbjct: 599 GVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP 646



 Score = 34.3 bits (77), Expect = 0.068
 Identities = 46/167 (27%), Positives = 51/167 (30%), Gaps = 20/167 (11%)

Query: 14  PRLPPRTRG---VRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTAT 70
           P  PP  RG   V   P    A G+    G R    P     PA          P   A 
Sbjct: 567 PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA- 625

Query: 71  NPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN----------GPPLLVSHTGFPS 120
             GP   R E   +        P    PPG A  P            GP       GFP 
Sbjct: 626 --GPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPG 683

Query: 121 PNRPRPAPHLLGHR----LRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
               +  P   G R      G  G KG   A G P  +  PGL G+P
Sbjct: 684 ERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMP 730



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 49/176 (27%), Positives = 62/176 (35%), Gaps = 26/176 (14%)

Query: 1   MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVR-----RGVSPV------- 48
           +P  +   GE+ +P       G +  P  L APG    RG R     RGV          
Sbjct: 645 LPGPAGPPGEAGKP-------GEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPR 697

Query: 49  -AQADPAQDASSFSYSTPVQTATN--PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP 105
            A   P  D +      P    +   PG + +  E  ++          +  P G   SP
Sbjct: 698 GANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSP 757

Query: 106 RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
             G   +   TG   P  P  AP   G    GP G  GP  ARG P  R  PG PG
Sbjct: 758 --GKDGVRGLTGPIGPPGPAGAPGDKGES--GPSGPAGPTGARGAPGDRGEPGPPG 809



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 98  PPG-RARSPRNGPPLLVSHTGF---PSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCP 153
           PPG +  S   G P     TG    P P   +  P        GP G +G   ARG P P
Sbjct: 426 PPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPP--------GPAGEEGKRGARGEPGP 477

Query: 154 RCLPGLPG 161
             LPG PG
Sbjct: 478 TGLPGPPG 485



 Score = 30.8 bits (68), Expect = 0.75
 Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 12/81 (14%)

Query: 93  PRNLSPPGRARSPRN--GPPLLVSHTGFPSPNRPRPAPHLLGHR----------LRGPGG 140
           PR L  P  A  P+   GPP      G   P  PR  P   G              G  G
Sbjct: 186 PRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERG 245

Query: 141 HKGPGPARGRPCPRCLPGLPG 161
             GP  ARG P    LPG+ G
Sbjct: 246 PPGPQGARGLPGTAGLPGMKG 266



 Score = 30.4 bits (67), Expect = 0.98
 Identities = 53/184 (28%), Positives = 64/184 (34%), Gaps = 30/184 (16%)

Query: 2   PRDSP-DQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVR----RGVSPVAQADPAQD 56
           P  +P D+GES  P  P    G R +P     PG     G          P A+ +P  D
Sbjct: 774 PAGAPGDKGES-GPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG-D 831

Query: 57  ASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPR-NLSPPGRARSP----RNGPPL 111
           A +   + P   A   GP    P    +      K  R +  PPG    P    R GPP 
Sbjct: 832 AGAKGDAGPPGPAGPAGP----PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPG 887

Query: 112 LVSHTGFPSPNRPRPAPHLLGHRLRG------------PGGHKGPGPARGRPCPRCLPGL 159
              + G P P  P PA    G   RG            P G  GP   +G P      G 
Sbjct: 888 PSGNAGPPGP--PGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGA 945

Query: 160 PGLP 163
           PG P
Sbjct: 946 PGTP 949



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 46/179 (25%), Positives = 54/179 (30%), Gaps = 41/179 (22%)

Query: 17   PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRH 76
            PP   G    P  +   G    +G R    P         A       P   A  PGP  
Sbjct: 840  PPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGP-- 897

Query: 77   LRPETSSSKQHFRTKAPRN----LSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLG 132
              P  +  +     K PR        PG    P  GPP      G P  + P  AP   G
Sbjct: 898  --PGPAGKEGG---KGPRGETGPAGRPGEVGPP--GPPGPAGEKGSPGADGPAGAPGTPG 950

Query: 133  HR----------LRGPGGHKG----PGPA--------------RGRPCPRCLPGLPGLP 163
             +          L G  G +G    PGP+              RG P P   PGL G P
Sbjct: 951  PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPP 1009



 Score = 27.7 bits (60), Expect = 6.3
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 9/46 (19%)

Query: 135 LRGPGGHKGP----GPARGRPCPRCLPGLPGLPITHIRFPAAPLPP 176
           + GP G  GP    GPA G P    +PG PGLP      P  P PP
Sbjct: 110 VEGPKGDTGPRGPRGPA-GPPGRDGIPGQPGLPGP----PGPPGPP 150



 Score = 27.7 bits (60), Expect = 6.3
 Identities = 30/91 (32%), Positives = 34/91 (37%), Gaps = 20/91 (21%)

Query: 91  KAPRN-LSPPGRARSPRNGPPLLVSHTGFPSPNRPRP-----APHL-LGHRLRGPGGHKG 143
           + PR    PPGR   P  G P L    G P P  P       AP L  G+  +  GG   
Sbjct: 120 RGPRGPAGPPGRDGIP--GQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISV 177

Query: 144 PGPAR-----------GRPCPRCLPGLPGLP 163
           PGP             G P P+   G PG P
Sbjct: 178 PGPMGPSGPRGLPGPPGAPGPQGFQGPPGEP 208


>gi|178557734 microtubule-associated protein tau isoform 6 [Homo
           sapiens]
          Length = 776

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 24/158 (15%)

Query: 45  VSPVAQADPAQDASSFSYSTPVQTAT-NPGPRHLRPETSSSKQHFRTKAPRNLSPPGR-- 101
           + P + A   +  SS  + + V + T + G + ++ + +  K    T  PR  +PPG+  
Sbjct: 424 IQPSSPAVCPEPPSSPKHVSSVTSRTGSSGAKEMKLKGADGKTKIAT--PRGAAPPGQKG 481

Query: 102 ----ARSPRNGPPLLVSHTGFPSPN---RPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR 154
                R P   PP   +     +     RP PA         GP   +G  P  G     
Sbjct: 482 QANATRIPAKTPPAPKTPPSSATKQVQRRPPPA---------GPRSERGEPPKSGDRSGY 532

Query: 155 CLPGLPGLPITHIRFPAAPLPPRLVAQVPSRPAAVLFP 192
             PG PG P +  R P+ P PP    + P + A V  P
Sbjct: 533 SSPGSPGTPGSRSRTPSLPTPP---TREPKKVAVVRTP 567


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
            sapiens]
          Length = 1691

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 31/91 (34%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 71   NPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHL 130
            NPGP  L   +           P N   PG    P+  P       GFP    P   P  
Sbjct: 1191 NPGPPGLPGLSGQKGDGGLPGIPGNPGLPG----PKGEP----GFHGFPGVQGPPGPPGS 1242

Query: 131  LGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
             G  L GP G+ GP    GRP P    GLPG
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGPTGFQGLPG 1273



 Score = 37.0 bits (84), Expect = 0.010
 Identities = 27/66 (40%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 108  GPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKG-------PGP--ARGRPCPRCLP 157
            G P L    G P P  P+  P L G   L GP G KG       PGP    G P P  +P
Sbjct: 991  GQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVP 1050

Query: 158  GLPGLP 163
            G PG P
Sbjct: 1051 GQPGSP 1056



 Score = 34.3 bits (77), Expect = 0.068
 Identities = 48/162 (29%), Positives = 53/162 (32%), Gaps = 36/162 (22%)

Query: 33  PGQGHTRGV-RRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTK 91
           PG G    V  +G+  VA  +P Q         P QT T PG   L              
Sbjct: 623 PGFGPPGPVGEKGIQGVA-GNPGQPGIPGPKGDPGQTITQPGKPGL-------------- 667

Query: 92  APRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKG----PGP- 146
            P N    G    P  G P L    G P     +  P + G  L GP G KG    PGP 
Sbjct: 668 -PGNPGRDGDVGLP--GDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPP 724

Query: 147 ----------ARGRPCPRCLPGLPGLPITHIRFPAAPLPPRL 178
                       G P P   PG  G P      P  P PP L
Sbjct: 725 GAPGTPGRIGLEGPPGPPGFPGPKGEP--GFALPGPPGPPGL 764



 Score = 34.3 bits (77), Expect = 0.068
 Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 98   PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR----LRGPGGHKGPGPARGRPCP 153
            PPG   SP    P L    G P P  P   P   G +      GP G  G G  +G    
Sbjct: 1236 PPGPPGSPG---PALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGN 1292

Query: 154  RCLPGLPGLP 163
               PGLPGLP
Sbjct: 1293 PGQPGLPGLP 1302



 Score = 33.9 bits (76), Expect = 0.088
 Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHI 167
           G P L  H G P    P   P        GP G KG     G P P+ + G PGLP    
Sbjct: 51  GFPGLEGHPGLPGFPGPEGPP--------GPRGQKGDDGIPGPPGPKGIRGPPGLP---- 98

Query: 168 RFPAAP 173
            FP  P
Sbjct: 99  GFPGTP 104



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 14/75 (18%)

Query: 99  PGRARSPRNGPPLLVSHTG---------FPSPNRPRPAPHLLGHRLRGPGGHKGPGPARG 149
           PG A     GPP L    G         FP P  P     L G  L GP G  GP    G
Sbjct: 751 PGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDG--LPGPKGDVGPN---G 805

Query: 150 RPCPRCLPGLPGLPI 164
           +P P   PGLPG+ +
Sbjct: 806 QPGPMGPPGLPGIGV 820



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 108  GPPLLVSHTGFPSPNRPRPAPHLLG----HRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            GPP L  + G P  N  +  P L G      ++GP G  G     G P     PG PGLP
Sbjct: 1309 GPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLP 1368



 Score = 31.6 bits (70), Expect = 0.44
 Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 16/82 (19%)

Query: 93  PRNLSPPGRARSPRNGPPLLVSHTGFPSP-----------NRPRPAPHLLGHRLRGPGGH 141
           P  + PPG       GPP      G P P            +  P P   G  + GP G 
Sbjct: 807 PGPMGPPGLPGIGVQGPP---GPPGIPGPIGQPGLHGIPGEKGDPGPP--GLDVPGPPGE 861

Query: 142 KGPGPARGRPCPRCLPGLPGLP 163
           +G     G P P   PG PGLP
Sbjct: 862 RGSPGIPGAPGPIGPPGSPGLP 883



 Score = 30.8 bits (68), Expect = 0.75
 Identities = 32/90 (35%), Positives = 36/90 (40%), Gaps = 21/90 (23%)

Query: 93   PRNLS-PPGRARSPRN-GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKG-PG-PAR 148
            P+ +S PPG    P   GP     H G P P   +  P   G  + GP G KG PG P  
Sbjct: 1132 PKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDG--IPGPAGQKGEPGQPGF 1189

Query: 149  GRPCPRCLPG---------------LPGLP 163
            G P P  LPG                PGLP
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLP 1219



 Score = 30.8 bits (68), Expect = 0.75
 Identities = 30/86 (34%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 93   PRNLSPPGRARSP-RNGPPLLVSHTGFPS-PNRPRPAPHLLGHRLRGPGGHKGPGPARGR 150
            P    PPG    P ++G P      G P  P    P P      L G  G KG G   G 
Sbjct: 1157 PGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPP----GLPGLSGQKGDGGLPGI 1212

Query: 151  PCPRCLPGLPGLPITHIRFPAAPLPP 176
            P    LPG  G P  H  FP    PP
Sbjct: 1213 PGNPGLPGPKGEPGFH-GFPGVQGPP 1237



 Score = 30.4 bits (67), Expect = 0.98
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 113  VSHTGFPSPNRPRPAPHLLGHR----LRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIR 168
            +S  G P    P+  P L G+     ++G  G  G     G P  +  PGLPG       
Sbjct: 1070 ISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPG------- 1122

Query: 169  FPAAPLPP 176
            FP  P PP
Sbjct: 1123 FPGTPGPP 1130



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 11/57 (19%)

Query: 107 NGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
           +GPP      G P P      P  LG    G  G KG   A G   P+ LPG+PG P
Sbjct: 490 SGPPGQPGLPGLPGP------PGSLG--FPGQKGEKGQAGATG---PKGLPGIPGAP 535



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 98  PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP 157
           PPG A     GPP      GFP     +      G  + GP G  G   A G P P    
Sbjct: 387 PPGAAVMGPPGPP------GFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA 440

Query: 158 GLPGLPITHIRFPAAPLPP 176
           G    P   I  P  P PP
Sbjct: 441 GPHIPPSDEICEPGPPGPP 459



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 98   PPGRARSPR-NGPPLLVSHTGFPSPNRPRPAPHLLG-HRLRGPGGHKGPGPARGRPCPRC 155
            PPG    P   G P      G P P  P   P   G     G GG KG     G+P  R 
Sbjct: 1383 PPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG 1442

Query: 156  LPGLPG 161
            L G PG
Sbjct: 1443 LDGPPG 1448



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 98  PPGRARSP-RNGPPLLVSHTGFPSP--NRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR 154
           PPG    P   G P  +  +  P P  N   P P  +   L GP G  GP    G P   
Sbjct: 145 PPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGI-QGLPGPTGIPGPIGPPGPPGLM 203

Query: 155 CLPGLPGLP 163
             PG PGLP
Sbjct: 204 GPPGPPGLP 212



 Score = 27.3 bits (59), Expect = 8.3
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 90  TKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARG 149
           T  P  + PPG        PP L+   G   P  P P  ++ G   +GP G KG    +G
Sbjct: 188 TGIPGPIGPPG--------PPGLMGPPG--PPGLPGPKGNM-GLNFQGPKGEKGEQGLQG 236

Query: 150 RPCP 153
            P P
Sbjct: 237 PPGP 240



 Score = 27.3 bits (59), Expect = 8.3
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 14/60 (23%)

Query: 117  GFPSPNRPRPAPHLLGHR-------------LRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            G P P  P   P+LLG +             + GP G++G     G+P     PGLPG P
Sbjct: 947  GLPGPPGPMD-PNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPP 1005


>gi|18079216 CASK interacting protein 1 [Homo sapiens]
          Length = 1431

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 42/127 (33%), Positives = 51/127 (40%), Gaps = 15/127 (11%)

Query: 64   TPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR-NGPPLLVSHTGFPSPN 122
            +P    T P P+     T +SK     K P  L  PG     R +G P  VS    P P 
Sbjct: 1227 SPKPVLTQPVPKLQGSPTPTSK-----KVP--LPGPGSPEVKRAHGTPPPVSPKPPPPPT 1279

Query: 123  RPRPAPHLLGHRLRGPGGHKGPGPA--RGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
             P+P   + G     P G  GP PA    R  P  L   PG P +    PA P  P   A
Sbjct: 1280 APKPVKAVAGL----PSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPA 1335

Query: 181  -QVPSRP 186
              VP++P
Sbjct: 1336 LHVPAKP 1342



 Score = 33.9 bits (76), Expect = 0.088
 Identities = 33/115 (28%), Positives = 38/115 (33%), Gaps = 15/115 (13%)

Query: 69  ATNPGPRHLRPETSSSKQHF----RTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRP 124
           A   GP  + P T     H     R    ++ S  GRAR   +   LL      PS    
Sbjct: 663 AAMTGPAEVGPTTEKPSSHLPPTPRATTRQDSSLGGRARHMSSSQELLGDGPPGPSSPMS 722

Query: 125 RPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLV 179
           R   +LL             GPA G P     PG  G  I     P  P  PR V
Sbjct: 723 RSQEYLLDE-----------GPAPGTPPREARPGRHGHSIKRASVPPVPGKPRQV 766



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 40/161 (24%), Positives = 59/161 (36%), Gaps = 39/161 (24%)

Query: 47  PVAQADPAQDAS---SFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRAR 103
           P  +A   QD+S      + +  Q     GP       S S+++   + P   +PP  AR
Sbjct: 684 PTPRATTRQDSSLGGRARHMSSSQELLGDGPPGPSSPMSRSQEYLLDEGPAPGTPPREAR 743

Query: 104 SPRNG-------------------PPLLVSHTGFPSPNRPRP-APHLLGHRLRGPGGHKG 143
             R+G                   PP     T   +P + RP +P  LG    GP G   
Sbjct: 744 PGRHGHSIKRASVPPVPGKPRQVLPPGTSHFTPPQTPTKTRPGSPQALG----GPHG-PA 798

Query: 144 PGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVAQVPS 184
           P  A+ +P P+ LP               P+ PR + Q P+
Sbjct: 799 PATAKVKPTPQLLPP-----------TERPMSPRSLPQSPT 828



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 12/92 (13%)

Query: 98   PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP 157
            P G AR P   P   VS    P P   +P P L G     P   K P P  G P  +   
Sbjct: 1214 PEGEARKPAKPP---VS----PKPVLTQPVPKLQGSPT--PTSKKVPLPGPGSPEVKRAH 1264

Query: 158  GLPGLPITHIRFP--AAPLPPRLVAQVPSRPA 187
            G P  P++    P   AP P + VA +PS  A
Sbjct: 1265 GTPP-PVSPKPPPPPTAPKPVKAVAGLPSGSA 1295


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 53/168 (31%), Positives = 61/168 (36%), Gaps = 20/168 (11%)

Query: 2   PRDSPDQGESIRP-----RLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQD 56
           P    D GE+ +P     R PP  +G R  P     PG    RG   G+        A  
Sbjct: 248 PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYP-GLDGAKGEAGAPG 306

Query: 57  ASSFSYSTPVQTATNP-GPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSH 115
               S S     +  P GPR L  E   +       A  N   PG A  P  GP      
Sbjct: 307 VKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPP--GPVGPAGG 364

Query: 116 TGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            GFP       AP   G    GP G +GP  A+G   PR  PG PG P
Sbjct: 365 PGFPG------APGAKGEA--GPTGARGPEGAQG---PRGEPGTPGSP 401



 Score = 36.6 bits (83), Expect = 0.014
 Identities = 46/161 (28%), Positives = 61/161 (37%), Gaps = 24/161 (14%)

Query: 9   GESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGV-----RRGV--SPVAQADPAQDASSFS 61
           GE  RP  PP  +G R  P ++  PG     G       +G+  +P  +  P +D  + +
Sbjct: 582 GEDGRPG-PPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 640

Query: 62  YSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP 121
              P       GP   R E  +         P    PPG    P +         G P  
Sbjct: 641 AGPPGPA----GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD--------QGVPGE 688

Query: 122 NRPRPAPHLLGHR-LRGPGGHKGPGPARGRPCPRCLPGLPG 161
                AP L+G R  RG  G +G   A+G   PR LPG PG
Sbjct: 689 ---AGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPG 726



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 38/141 (26%), Positives = 47/141 (33%), Gaps = 9/141 (6%)

Query: 14  PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPG 73
           P  PP   G    P    APG     G      P     P  +  +     P   + NPG
Sbjct: 352 PAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPG 411

Query: 74  PRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGH 133
              +     S+       AP     PG    PR GPP     TG   P      P + G 
Sbjct: 412 TDGIPGAKGSAG------APGIAGAPGFP-GPR-GPPGPQGATGPLGPKGQTGEPGIAGF 463

Query: 134 R-LRGPGGHKGPGPARGRPCP 153
           +  +GP G  GP   +G P P
Sbjct: 464 KGEQGPKGEPGPAGPQGAPGP 484



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 37/135 (27%), Positives = 44/135 (32%), Gaps = 17/135 (12%)

Query: 32  APGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTK 91
           APG+   RG+   + P   A    +        P  +A   G    R ET          
Sbjct: 778 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP------- 830

Query: 92  APRNLS-PPGRARSP----RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGP 146
            P   + PPG    P      G        G P P  P  AP       +GP G  GP  
Sbjct: 831 GPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGP-----QGPTGVTGPKG 885

Query: 147 ARGRPCPRCLPGLPG 161
           ARG   P    G PG
Sbjct: 886 ARGAQGPPGATGFPG 900



 Score = 32.3 bits (72), Expect = 0.26
 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 16/69 (23%)

Query: 96  LSPPGRARSPRNGPPLLVSHTGFPSPNR---PRPAPHLLGHRLRGPGGHKGPGPARGRPC 152
           + PPG   +P N         GFP  +    P+ AP       RGP G  GP  A G P 
Sbjct: 503 IGPPGERGAPGN--------RGFPGQDGLAGPKGAPGE-----RGPSGLAGPKGANGDPG 549

Query: 153 PRCLPGLPG 161
               PGLPG
Sbjct: 550 RPGEPGLPG 558



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 42/166 (25%), Positives = 51/166 (30%), Gaps = 25/166 (15%)

Query: 14  PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPG 73
           PR  P  RG RT P      G    RG      P     P   A    +          G
Sbjct: 325 PRGLPGERG-RTGPA-----GAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG 378

Query: 74  PRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN----------GPPLLVSHTGFPSPNR 123
           P   R    +         P +  P G + +P            G P +    GFP P  
Sbjct: 379 PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 438

Query: 124 PRPAPH----LLGHRLR----GPGGHKGPGPARGRPCPRCLPGLPG 161
           P P P      LG + +    G  G KG    +G P P    G PG
Sbjct: 439 P-PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPG 483



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 41/162 (25%), Positives = 54/162 (33%), Gaps = 16/162 (9%)

Query: 14  PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVA----------QADPAQDASSFSYS 63
           P+  P   G + +P      G+   RG   GV P+           +  P QD  +    
Sbjct: 469 PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKG 528

Query: 64  TPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN-GPPLLVSHTGFPSPN 122
            P +     GP  L     ++    R   P      G    P + GP   V  +G P  +
Sbjct: 529 APGER----GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGED 584

Query: 123 -RPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            RP P          G  G  GP  A G P      GLPG P
Sbjct: 585 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP 626



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 32/87 (36%), Positives = 33/87 (37%), Gaps = 17/87 (19%)

Query: 97   SPPGRARSPRNGPPLLVSHTG------FPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGR 150
            S P     PR GPP  V  +G       P P  P P P       RG  G  GP    G 
Sbjct: 1154 SGPAGPSGPR-GPPGPVGPSGKDGANGIPGPIGP-PGP-------RGRSGETGPAGPPGN 1204

Query: 151  PCPRCLPGLPGLPITHIRFPAAPLPPR 177
            P P   PG PG  I    F  A L PR
Sbjct: 1205 PGPPGPPGPPGPGIDMSAF--AGLGPR 1229



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 34/140 (24%), Positives = 44/140 (31%), Gaps = 40/140 (28%)

Query: 64  TPVQTATN-PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR---------------- 106
           T + TA+  PGP+  + E    K     K P     P   + PR                
Sbjct: 91  TDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRG 150

Query: 107 -NGPPLLVSHTGFPSPNRPRPAPHLLGHRLR----------------------GPGGHKG 143
            +G P    + G P P  P   P L G+                         GP G +G
Sbjct: 151 RDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRG 210

Query: 144 PGPARGRPCPRCLPGLPGLP 163
           P    G P P+   G PG P
Sbjct: 211 PPGPAGAPGPQGFQGNPGEP 230



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 25/69 (36%), Positives = 25/69 (36%), Gaps = 18/69 (26%)

Query: 98  PPGRARSP----RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCP 153
           PPG    P    R GPP      G P P  P            GP G  GP  ARG   P
Sbjct: 892 PPGATGFPGAAGRVGPP---GSNGNPGPPGPP-----------GPSGKDGPKGARGDSGP 937

Query: 154 RCLPGLPGL 162
               G PGL
Sbjct: 938 PGRAGEPGL 946



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 12/65 (18%)

Query: 112 LVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPA 171
           +V   G P P  P           +GP G +G    +G P PR   G PG P      P 
Sbjct: 115 IVGPKGPPGPQGPAGE--------QGPRGDRGDKGEKGAPGPRGRDGEPGTPGN----PG 162

Query: 172 APLPP 176
            P PP
Sbjct: 163 PPGPP 167



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 98  PPGRARSPR----NGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-GPGGHKGPGPARGRPC 152
           PPG A +P      G P      G   P  PR  P   G     G  G  G    RG P 
Sbjct: 211 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPG 270

Query: 153 PRCLPGLPGLP 163
           P+   G PG P
Sbjct: 271 PQGARGFPGTP 281



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 32/97 (32%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 71  NPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR----NGPPLLVSHTGFPSPNRPRP 126
           NPGP    P   S K   +  A  +  PPGRA  P      GPP      G   P+    
Sbjct: 913 NPGPPG--PPGPSGKDGPKG-ARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEG 969

Query: 127 APHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            P        GP G  G     G P  R   G PGLP
Sbjct: 970 PP--------GPQGLAGQRGIVGLPGQRGERGFPGLP 998



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 44/169 (26%), Positives = 51/169 (30%), Gaps = 24/169 (14%)

Query: 14  PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQ-ADPAQDASSFSYSTPVQTATN- 71
           PR PP   G          PG+    GV   + P      P +         P +     
Sbjct: 208 PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERG 267

Query: 72  -PGPRHLR-----PETSSSKQHFRTKAPRNLSPPGRARSP----RNGPPLLVSHTGFPSP 121
            PGP+  R     P     K H     P      G A +P     +G P      G P P
Sbjct: 268 PPGPQGARGFPGTPGLPGVKGH--RGYPGLDGAKGEAGAPGVKGESGSP---GENGSPGP 322

Query: 122 NRPRPAPHLLGHR-------LRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
             PR  P   G          RG  G  GP    G   P   PG PG P
Sbjct: 323 MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAP 371



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 107 NGPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKGPGPARGR---PCPRCLPGLPGL 162
           NG P      G P     R  P   G     GP G  GP   RG    P P    GLPG 
Sbjct: 611 NGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP 670

Query: 163 P 163
           P
Sbjct: 671 P 671


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 53/168 (31%), Positives = 61/168 (36%), Gaps = 20/168 (11%)

Query: 2   PRDSPDQGESIRP-----RLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQD 56
           P    D GE+ +P     R PP  +G R  P     PG    RG   G+        A  
Sbjct: 179 PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYP-GLDGAKGEAGAPG 237

Query: 57  ASSFSYSTPVQTATNP-GPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSH 115
               S S     +  P GPR L  E   +       A  N   PG A  P  GP      
Sbjct: 238 VKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPP--GPVGPAGG 295

Query: 116 TGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            GFP       AP   G    GP G +GP  A+G   PR  PG PG P
Sbjct: 296 PGFPG------APGAKGEA--GPTGARGPEGAQG---PRGEPGTPGSP 332



 Score = 36.6 bits (83), Expect = 0.014
 Identities = 46/161 (28%), Positives = 61/161 (37%), Gaps = 24/161 (14%)

Query: 9   GESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGV-----RRGV--SPVAQADPAQDASSFS 61
           GE  RP  PP  +G R  P ++  PG     G       +G+  +P  +  P +D  + +
Sbjct: 513 GEDGRPG-PPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 571

Query: 62  YSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP 121
              P       GP   R E  +         P    PPG    P +         G P  
Sbjct: 572 AGPPGPA----GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD--------QGVPGE 619

Query: 122 NRPRPAPHLLGHR-LRGPGGHKGPGPARGRPCPRCLPGLPG 161
                AP L+G R  RG  G +G   A+G   PR LPG PG
Sbjct: 620 ---AGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPG 657



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 38/141 (26%), Positives = 47/141 (33%), Gaps = 9/141 (6%)

Query: 14  PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPG 73
           P  PP   G    P    APG     G      P     P  +  +     P   + NPG
Sbjct: 283 PAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPG 342

Query: 74  PRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGH 133
              +     S+       AP     PG    PR GPP     TG   P      P + G 
Sbjct: 343 TDGIPGAKGSAG------APGIAGAPGFP-GPR-GPPGPQGATGPLGPKGQTGEPGIAGF 394

Query: 134 R-LRGPGGHKGPGPARGRPCP 153
           +  +GP G  GP   +G P P
Sbjct: 395 KGEQGPKGEPGPAGPQGAPGP 415



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 37/135 (27%), Positives = 44/135 (32%), Gaps = 17/135 (12%)

Query: 32  APGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTK 91
           APG+   RG+   + P   A    +        P  +A   G    R ET          
Sbjct: 709 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP------- 761

Query: 92  APRNLS-PPGRARSP----RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGP 146
            P   + PPG    P      G        G P P  P  AP       +GP G  GP  
Sbjct: 762 GPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGP-----QGPTGVTGPKG 816

Query: 147 ARGRPCPRCLPGLPG 161
           ARG   P    G PG
Sbjct: 817 ARGAQGPPGATGFPG 831



 Score = 32.3 bits (72), Expect = 0.26
 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 16/69 (23%)

Query: 96  LSPPGRARSPRNGPPLLVSHTGFPSPNR---PRPAPHLLGHRLRGPGGHKGPGPARGRPC 152
           + PPG   +P N         GFP  +    P+ AP       RGP G  GP  A G P 
Sbjct: 434 IGPPGERGAPGN--------RGFPGQDGLAGPKGAPGE-----RGPSGLAGPKGANGDPG 480

Query: 153 PRCLPGLPG 161
               PGLPG
Sbjct: 481 RPGEPGLPG 489



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 42/166 (25%), Positives = 51/166 (30%), Gaps = 25/166 (15%)

Query: 14  PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPG 73
           PR  P  RG RT P      G    RG      P     P   A    +          G
Sbjct: 256 PRGLPGERG-RTGPA-----GAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG 309

Query: 74  PRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN----------GPPLLVSHTGFPSPNR 123
           P   R    +         P +  P G + +P            G P +    GFP P  
Sbjct: 310 PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 369

Query: 124 PRPAPH----LLGHRLR----GPGGHKGPGPARGRPCPRCLPGLPG 161
           P P P      LG + +    G  G KG    +G P P    G PG
Sbjct: 370 P-PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPG 414



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 41/162 (25%), Positives = 54/162 (33%), Gaps = 16/162 (9%)

Query: 14  PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVA----------QADPAQDASSFSYS 63
           P+  P   G + +P      G+   RG   GV P+           +  P QD  +    
Sbjct: 400 PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKG 459

Query: 64  TPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN-GPPLLVSHTGFPSPN 122
            P +     GP  L     ++    R   P      G    P + GP   V  +G P  +
Sbjct: 460 APGER----GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGED 515

Query: 123 -RPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            RP P          G  G  GP  A G P      GLPG P
Sbjct: 516 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP 557



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 32/87 (36%), Positives = 33/87 (37%), Gaps = 17/87 (19%)

Query: 97   SPPGRARSPRNGPPLLVSHTG------FPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGR 150
            S P     PR GPP  V  +G       P P  P P P       RG  G  GP    G 
Sbjct: 1085 SGPAGPSGPR-GPPGPVGPSGKDGANGIPGPIGP-PGP-------RGRSGETGPAGPPGN 1135

Query: 151  PCPRCLPGLPGLPITHIRFPAAPLPPR 177
            P P   PG PG  I    F  A L PR
Sbjct: 1136 PGPPGPPGPPGPGIDMSAF--AGLGPR 1160



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 32/136 (23%), Positives = 40/136 (29%), Gaps = 39/136 (28%)

Query: 67  QTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR-----------------NGP 109
           Q    PGP+  + E    K     K P     P   + PR                 +G 
Sbjct: 26  QDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGE 85

Query: 110 PLLVSHTGFPSPNRPRPAPHLLGHRLR----------------------GPGGHKGPGPA 147
           P    + G P P  P   P L G+                         GP G +GP   
Sbjct: 86  PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGP 145

Query: 148 RGRPCPRCLPGLPGLP 163
            G P P+   G PG P
Sbjct: 146 AGAPGPQGFQGNPGEP 161



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 25/69 (36%), Positives = 25/69 (36%), Gaps = 18/69 (26%)

Query: 98  PPGRARSP----RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCP 153
           PPG    P    R GPP      G P P  P            GP G  GP  ARG   P
Sbjct: 823 PPGATGFPGAAGRVGPP---GSNGNPGPPGPP-----------GPSGKDGPKGARGDSGP 868

Query: 154 RCLPGLPGL 162
               G PGL
Sbjct: 869 PGRAGEPGL 877



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 12/65 (18%)

Query: 112 LVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPA 171
           +V   G P P  P           +GP G +G    +G P PR   G PG P      P 
Sbjct: 46  IVGPKGPPGPQGPAGE--------QGPRGDRGDKGEKGAPGPRGRDGEPGTPGN----PG 93

Query: 172 APLPP 176
            P PP
Sbjct: 94  PPGPP 98



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 98  PPGRARSPR----NGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-GPGGHKGPGPARGRPC 152
           PPG A +P      G P      G   P  PR  P   G     G  G  G    RG P 
Sbjct: 142 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPG 201

Query: 153 PRCLPGLPGLP 163
           P+   G PG P
Sbjct: 202 PQGARGFPGTP 212



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 32/97 (32%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 71  NPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR----NGPPLLVSHTGFPSPNRPRP 126
           NPGP    P   S K   +  A  +  PPGRA  P      GPP      G   P+    
Sbjct: 844 NPGPPG--PPGPSGKDGPKG-ARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEG 900

Query: 127 APHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            P        GP G  G     G P  R   G PGLP
Sbjct: 901 PP--------GPQGLAGQRGIVGLPGQRGERGFPGLP 929



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 44/169 (26%), Positives = 51/169 (30%), Gaps = 24/169 (14%)

Query: 14  PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQ-ADPAQDASSFSYSTPVQTATN- 71
           PR PP   G          PG+    GV   + P      P +         P +     
Sbjct: 139 PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERG 198

Query: 72  -PGPRHLR-----PETSSSKQHFRTKAPRNLSPPGRARSP----RNGPPLLVSHTGFPSP 121
            PGP+  R     P     K H     P      G A +P     +G P      G P P
Sbjct: 199 PPGPQGARGFPGTPGLPGVKGH--RGYPGLDGAKGEAGAPGVKGESGSP---GENGSPGP 253

Query: 122 NRPRPAPHLLGHR-------LRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
             PR  P   G          RG  G  GP    G   P   PG PG P
Sbjct: 254 MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAP 302



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 107 NGPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKGPGPARGR---PCPRCLPGLPGL 162
           NG P      G P     R  P   G     GP G  GP   RG    P P    GLPG 
Sbjct: 542 NGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP 601

Query: 163 P 163
           P
Sbjct: 602 P 602


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 35/98 (35%), Positives = 42/98 (42%), Gaps = 13/98 (13%)

Query: 73   GPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR-NGPPLLVSHTGFPSPNRPRPAPHLL 131
            GPR  + E  +  Q    + P     PGR   P  +GPP      G P P  P   P L 
Sbjct: 1341 GPRGPKGEPGAPGQVIGGEGP---GLPGRKGDPGPSGPPGPRGPLGDPGPRGP---PGLP 1394

Query: 132  GHRLRGPGGHKG----PGPARGRPCPR--CLPGLPGLP 163
            G  ++G  G +G    PGP  G   P    LPGLPG P
Sbjct: 1395 GTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSP 1432



 Score = 35.4 bits (80), Expect = 0.030
 Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 24/87 (27%)

Query: 101  RARSPRNGPPLLVSHTGFPSPNRPR-----PAPHLLGHR----LRG----PGGHKGPGPA 147
            R    R+GPP L    G P P  P+     P P L G +    L+G    PG +   GP 
Sbjct: 2069 RGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPK 2128

Query: 148  -----------RGRPCPRCLPGLPGLP 163
                       RG P PR   G PGLP
Sbjct: 2129 GDRGVPGIKGDRGEPGPRGQDGNPGLP 2155



 Score = 34.3 bits (77), Expect = 0.068
 Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 23/113 (20%)

Query: 72   PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN-GPPLLVSHTGFPSPNR------- 123
            PGP+      ++  +     A      PGRA +P   G P L    G P P         
Sbjct: 1283 PGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGP 1342

Query: 124  --PRPAPHLLGHRLRGPG----GHKG-PGPAR--------GRPCPRCLPGLPG 161
              P+  P   G  + G G    G KG PGP+         G P PR  PGLPG
Sbjct: 1343 RGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPG 1395



 Score = 34.3 bits (77), Expect = 0.068
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 96   LSPPGRARSP---RNGPPLLVSHTGFPSPNRPRPAPHLLGHR----LRGPGGHKGPGPAR 148
            + PPG+        +G P L    G P    PR  P  +G +      GP G  G    R
Sbjct: 1438 VGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGER 1497

Query: 149  GRPCPRCLPGLPGL 162
            G P P    GLPG+
Sbjct: 1498 GPPGPAGSRGLPGV 1511



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 27/77 (35%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 93   PRNLSPPGRARSPRN--GPPLLVSHTGFPS----PNRPRPAPHLLGHRLRGPGGHKGPGP 146
            P    PPG A   R   GP  L    G P     P R            RG  G KG   
Sbjct: 2011 PGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERG 2070

Query: 147  ARGRPCPRCLPGLPGLP 163
             +GR  P  LPG PG P
Sbjct: 2071 EQGRDGPPGLPGTPGPP 2087



 Score = 31.2 bits (69), Expect = 0.57
 Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 18/79 (22%)

Query: 108  GPPLLVSHTGFPSPNRPRPAPHLLGHR----------LRGPGGHKGPGPARGRPCPRCLP 157
            G P +    G P P      P L G R          L+GP G  GP    G P P   P
Sbjct: 2132 GVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAP 2191

Query: 158  GLPGLPITHIRFPAAPLPP 176
            GL G        PA P  P
Sbjct: 2192 GLAG--------PAGPQGP 2202



 Score = 30.8 bits (68), Expect = 0.75
 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 93   PRNLSPPGRARSPRNGPPLLVSHTGFPSPNR---PRPAPHLLGH-RLRGPGGHKGPGPAR 148
            P    PPGR  +   GP   V   G P P+    P+ +P L G     G  G  G   A 
Sbjct: 2209 PGETGPPGRGLT---GPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGAS 2265

Query: 149  GRPCPRCLPGLPGLP 163
            G+   R  PG+PG P
Sbjct: 2266 GKDGDRGSPGVPGSP 2280



 Score = 30.4 bits (67), Expect = 0.98
 Identities = 33/112 (29%), Positives = 39/112 (34%), Gaps = 15/112 (13%)

Query: 89   RTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR-------LRGPGGH 141
            RT AP    PPG A +            GFP  +    +P   G+        L+G  G 
Sbjct: 1279 RTGAPGPQGPPGSATAK--------GERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGL 1330

Query: 142  KGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVAQVPSRPAAVLFPM 193
             GP    G   PR   G PG P   I      LP R     PS P     P+
Sbjct: 1331 PGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPL 1382



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 29/79 (36%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 103  RSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP--GLP 160
            + PR GPP  V   G P P      P   G  L GP G +GP   +G P     P  GL 
Sbjct: 2170 QGPR-GPPGPVGGHGDPGP------PGAPG--LAGPAGPQGPSGLKGEPGETGPPGRGLT 2220

Query: 161  GLPITHIRFPAAPLPPRLV 179
            G P   +  P  P P  LV
Sbjct: 2221 G-PTGAVGLPGPPGPSGLV 2238



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 47/167 (28%), Positives = 58/167 (34%), Gaps = 30/167 (17%)

Query: 7    DQGESIRPRLPPRT--RGVRTSPRMLVAPGQGHTRGVRRGVSPVA-QADPAQDASSFS-- 61
            D+G    P LP +   RG+R +P            GVR  V     Q DP +D  + S  
Sbjct: 1641 DEGPPGDPGLPGKAGERGLRGAP------------GVRGPVGEKGDQGDPGEDGRNGSPG 1688

Query: 62   YSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSH-----T 116
             S P      PGP         +    R K           R P+  P L  +       
Sbjct: 1689 SSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIE 1748

Query: 117  GFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
            GF  P  P+  P +     RGP G KG    RG P      GL G P
Sbjct: 1749 GFRGPPGPQGDPGV-----RGPAGEKGD---RGPPGLDGRSGLDGKP 1787



 Score = 28.5 bits (62), Expect = 3.7
 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 15/82 (18%)

Query: 100  GRARSPRNGPPLLVSHTGFPSPNRPRPAPHLL----GHRLRGPGGHKGPGPARGRPCPRC 155
            GR  SP +  P      G P P  P P   L+    G R +G  G +G    RG   P+ 
Sbjct: 1682 GRNGSPGSSGPK--GDRGEPGP--PGPPGRLVDTGPGAREKGEPGDRGQEGPRG---PKG 1734

Query: 156  LPGLPGLP----ITHIRFPAAP 173
             PGLPG P    I   R P  P
Sbjct: 1735 DPGLPGAPGERGIEGFRGPPGP 1756



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 21/112 (18%)

Query: 72   PGPRHLRPETSSSKQHFRT--KAPRNLSPPGRARSPRN-----GPPLLVSHTGFPS---- 120
            PGPR  R E     +  R   + PR L+ P  +R  R      G   L    G  +    
Sbjct: 2468 PGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILG 2527

Query: 121  PNRPRPAPHLLGHR----------LRGPGGHKGPGPARGRPCPRCLPGLPGL 162
            P  PR A   +G R           RG  G  G   ++G P  +   GLPGL
Sbjct: 2528 PPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGL 2579


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,064,489
Number of Sequences: 37866
Number of extensions: 913849
Number of successful extensions: 8206
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 815
Number of HSP's that attempted gapping in prelim test: 4589
Number of HSP's gapped (non-prelim): 3309
length of query: 193
length of database: 18,247,518
effective HSP length: 97
effective length of query: 96
effective length of database: 14,574,516
effective search space: 1399153536
effective search space used: 1399153536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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