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Search of human proteins with 116174742
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116174742 family with sequence similarity 20, member C [Homo
sapiens]
(584 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116174742 family with sequence similarity 20, member C [Homo ... 1204 0.0
gi|241896898 family with sequence similarity 20, member A [Homo ... 438 e-123
gi|7662150 hypothetical protein LOC9917 [Homo sapiens] 274 2e-73
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 44 3e-04
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 43 0.001
gi|154937344 complement component 1, q subcomponent-like 2 [Homo... 41 0.003
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 39 0.010
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 39 0.010
gi|13994287 BTE-binding protein 4 [Homo sapiens] 39 0.017
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 38 0.029
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 38 0.029
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 37 0.038
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 37 0.038
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 37 0.038
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 37 0.038
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.050
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 37 0.050
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 37 0.050
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 37 0.050
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 37 0.050
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 37 0.050
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 37 0.066
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 36 0.086
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 36 0.086
gi|7657166 homeobox C11 [Homo sapiens] 36 0.086
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 36 0.086
gi|110832843 TBP-associated factor 4 [Homo sapiens] 36 0.11
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 35 0.15
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 35 0.15
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 35 0.15
>gi|116174742 family with sequence similarity 20, member C [Homo
sapiens]
Length = 584
Score = 1204 bits (3114), Expect = 0.0
Identities = 584/584 (100%), Positives = 584/584 (100%)
Query: 1 MKMMLVRRFRVLILMVFLVACALHIALDLLPRLERRGARPSGEPGCSCAQPAAEVAAPGW 60
MKMMLVRRFRVLILMVFLVACALHIALDLLPRLERRGARPSGEPGCSCAQPAAEVAAPGW
Sbjct: 1 MKMMLVRRFRVLILMVFLVACALHIALDLLPRLERRGARPSGEPGCSCAQPAAEVAAPGW 60
Query: 61 AQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPAAEPAERA 120
AQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPAAEPAERA
Sbjct: 61 AQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPAAEPAERA 120
Query: 121 LRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGDASLLARLFEHPLYRVAVPPLTEE 180
LRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGDASLLARLFEHPLYRVAVPPLTEE
Sbjct: 121 LRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGDASLLARLFEHPLYRVAVPPLTEE 180
Query: 181 DVLFNVNSDTRLSPKAAENPDWPHAGAEGAEFLSPGEAAVDSYPNWLKFHIGINRYELYS 240
DVLFNVNSDTRLSPKAAENPDWPHAGAEGAEFLSPGEAAVDSYPNWLKFHIGINRYELYS
Sbjct: 181 DVLFNVNSDTRLSPKAAENPDWPHAGAEGAEFLSPGEAAVDSYPNWLKFHIGINRYELYS 240
Query: 241 RHNPAIEALLHDLSSQRITSVAMKSGGTQLKLIMTFQNYGQALFKPMKQTREQETPPDFF 300
RHNPAIEALLHDLSSQRITSVAMKSGGTQLKLIMTFQNYGQALFKPMKQTREQETPPDFF
Sbjct: 241 RHNPAIEALLHDLSSQRITSVAMKSGGTQLKLIMTFQNYGQALFKPMKQTREQETPPDFF 300
Query: 301 YFSDYERHNAEIAAFHLDRILDFRRVPPVAGRMVNMTKEIRDVTRDKKLWRTFFISPANN 360
YFSDYERHNAEIAAFHLDRILDFRRVPPVAGRMVNMTKEIRDVTRDKKLWRTFFISPANN
Sbjct: 301 YFSDYERHNAEIAAFHLDRILDFRRVPPVAGRMVNMTKEIRDVTRDKKLWRTFFISPANN 360
Query: 361 ICFYGECSYYCSTEHALCGKPDQIEGSLAAFLPDLSLAKRKTWRNPWRRSYHKRKKAEWE 420
ICFYGECSYYCSTEHALCGKPDQIEGSLAAFLPDLSLAKRKTWRNPWRRSYHKRKKAEWE
Sbjct: 361 ICFYGECSYYCSTEHALCGKPDQIEGSLAAFLPDLSLAKRKTWRNPWRRSYHKRKKAEWE 420
Query: 421 VDPDYCEEVKQTPPYDSSHRILDVMDMTIFDFLMGNMDRHHYETFEKFGNETFIIHLDNG 480
VDPDYCEEVKQTPPYDSSHRILDVMDMTIFDFLMGNMDRHHYETFEKFGNETFIIHLDNG
Sbjct: 421 VDPDYCEEVKQTPPYDSSHRILDVMDMTIFDFLMGNMDRHHYETFEKFGNETFIIHLDNG 480
Query: 481 RGFGKYSHDELSILVPLQQCCRIRKSTYLRLQLLAKEEYKLSLLMAESLRGDQVAPVLYQ 540
RGFGKYSHDELSILVPLQQCCRIRKSTYLRLQLLAKEEYKLSLLMAESLRGDQVAPVLYQ
Sbjct: 481 RGFGKYSHDELSILVPLQQCCRIRKSTYLRLQLLAKEEYKLSLLMAESLRGDQVAPVLYQ 540
Query: 541 PHLEALDRRLRVVLKAVRDCVERNGLHSVVDDDLDTEHRAASAR 584
PHLEALDRRLRVVLKAVRDCVERNGLHSVVDDDLDTEHRAASAR
Sbjct: 541 PHLEALDRRLRVVLKAVRDCVERNGLHSVVDDDLDTEHRAASAR 584
>gi|241896898 family with sequence similarity 20, member A [Homo
sapiens]
Length = 541
Score = 438 bits (1126), Expect = e-123
Identities = 224/451 (49%), Positives = 298/451 (66%), Gaps = 25/451 (5%)
Query: 145 PRRSESPPGPGGDASLLARLFEHPLYRVAVPP--LTEEDVLFNVNSDTRLSPKAAENPDW 202
PR + G +S L LF HPLY V P L ED L R + +
Sbjct: 76 PRTEPAGGSHSGSSSKLQALFAHPLYNVPEEPPLLGAEDSLLASQEALRYYRRKVARWNR 135
Query: 203 PHAGAEGAEFLS----PGEAAVDSYPNWLKFHIGINRYELYSRHNPAIEALLHDLSSQRI 258
H L+ P + +++ +W++FH+GINR+ LYSR +P + LL D+
Sbjct: 136 RHKMYREQMNLTSLDPPLQLRLEA--SWVQFHLGINRHGLYSRSSPVVSKLLQDMRHFPT 193
Query: 259 TSV-----------------AMKSGGTQLKLIMTFQNYGQALFKPMKQTREQETPPDFFY 301
S +K G LKL++ F ++G+A+FKPM+Q R++ETP DFFY
Sbjct: 194 ISADYSQDEKALLGACDCTQIVKPSGVHLKLVLRFSDFGKAMFKPMRQQRDEETPVDFFY 253
Query: 302 FSDYERHNAEIAAFHLDRILDFRRVPPVAGRMVNMTKEIRDVTRDKKLWRTFFISPANNI 361
F D++RHNAEIAAFHLDRILDFRRVPP GR+VN+TKEI +VT+++ L FF+SPA+N+
Sbjct: 254 FIDFQRHNAEIAAFHLDRILDFRRVPPTVGRIVNVTKEILEVTKNEILQSVFFVSPASNV 313
Query: 362 CFYGECSYYCSTEHALCGKPDQIEGSLAAFLPDLSLAKRKTWRNPWRRSYHKRKKAEWEV 421
CF+ +C Y C TE+A+CG P +EGSL+AFLP L+LA R + NPW RSY K EWEV
Sbjct: 314 CFFAKCPYMCKTEYAVCGNPHLLEGSLSAFLPSLNLAPRLSVPNPWIRSYTLAGKEEWEV 373
Query: 422 DPDYCEEVKQTPPYDSSHRILDVMDMTIFDFLMGNMDRHHYETFEKFGNETFIIHLDNGR 481
+P YC+ VKQ PY++S R+L+V+DM IFDFL+GNMDRHHYE F KFG++ F+IHLDN R
Sbjct: 374 NPLYCDTVKQIYPYNNSQRLLNVIDMAIFDFLIGNMDRHHYEMFTKFGDDGFLIHLDNAR 433
Query: 482 GFGKYSHDELSILVPLQQCCRIRKSTYLRLQLLAKEEYKLSLLMAESLRGDQVAPVLYQP 541
GFG++SHDE+SIL PL QCC I+K T L LQLLA+ +Y+LS +M ESL DQ++PVL +P
Sbjct: 434 GFGRHSHDEISILSPLSQCCMIKKKTLLHLQLLAQADYRLSDVMRESLLEDQLSPVLTEP 493
Query: 542 HLEALDRRLRVVLKAVRDCVERNGLHSVVDD 572
HL ALDRRL+ +L+ V C+ +G SV+ D
Sbjct: 494 HLLALDRRLQTILRTVEGCIVAHGQQSVIVD 524
>gi|7662150 hypothetical protein LOC9917 [Homo sapiens]
Length = 409
Score = 274 bits (700), Expect = 2e-73
Identities = 141/337 (41%), Positives = 209/337 (62%), Gaps = 9/337 (2%)
Query: 237 ELYSRHNPAIEALLHDLSSQRITSVAMKSGGTQLKLIMTFQNYGQALFKPMKQTREQETP 296
E+Y P + A++H +++++I + GTQLK ++ + + +FKP + +R+
Sbjct: 75 EVYPEETPELGAVMHAMATKKIIKADVGYKGTQLKALLILEGGQKVVFKPKRYSRDHVVE 134
Query: 297 PDFFYFSDYERHNAEIAAFHLDRILDFRRVPPVAGRMVNMTKEIRDVTRDKKLWRTFFIS 356
+ ++ Y+RHNAE+AAFHLDRIL F R P V GR VN+ EI+ V ++ L + F++
Sbjct: 135 GE--PYAGYDRHNAEVAAFHLDRILGFHRAPLVVGRFVNLRTEIKPVATEQLL--STFLT 190
Query: 357 PANNICFYGECSYYCSTEHALCGKPDQIEGSLAAFLPDLSLAKRKTWRNPWRRSYHKRKK 416
NN CFYG+C YYC C D +EGS+ +LPD+ ++ R+PW R+Y + K
Sbjct: 191 VGNNTCFYGKC-YYCRETEPACADGDIMEGSVTLWLPDVWPLQKH--RHPWGRTYREGKL 247
Query: 417 AEWEVDPDYCEEVKQTPPYDSSHRILDVMDMTIFDFLMGNMDRHHYETFEKFGNETFIIH 476
A WE D YC+ VK+T PYDS R+LD++D +FD+L+GN DRHHYE+F+ + +I
Sbjct: 248 ARWEYDESYCDAVKKTSPYDSGPRLLDIIDTAVFDYLIGNADRHHYESFQDDEGASMLIL 307
Query: 477 LDNGRGFGKYSHDELSILVPLQQCCRIRKSTYLRLQLLAKEEYKLSLLMAESLRGDQVAP 536
LDN + FG S DE SIL PL QCC IR ST+ RL L K +L A + D ++P
Sbjct: 308 LDNAKSFGNPSLDERSILAPLYQCCIIRVSTWNRLNYLKNGVLKSALKSA--MAHDPISP 365
Query: 537 VLYQPHLEALDRRLRVVLKAVRDCVERNGLHSVVDDD 573
VL PHL+A+D+RL VL V+ C ++ G+ +V+ +D
Sbjct: 366 VLSDPHLDAVDQRLLSVLATVKQCTDQFGMDTVLVED 402
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 44.3 bits (103), Expect = 3e-04
Identities = 47/181 (25%), Positives = 65/181 (35%), Gaps = 23/181 (12%)
Query: 27 LDLLPRLERRGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKH 86
L L P ER S E AQ + ++ G A +PG P A A +
Sbjct: 578 LGLQPGPERTSTTKSKELSPGSAQKGSPGSSQGTACAGTQPGAQPGAQPGASPS------ 631
Query: 87 TLRILQDFSSDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAH-RPLLRDPGP 145
S P ++ S H+L K+ P + PGA+ P+ P P
Sbjct: 632 --------PSQPPADQSPHTLRKVSKKLAPIPPKVPFGQPGAMADQSAGQPSPVSLSPTP 683
Query: 146 RRSESPPG---PGGDASLLARLFEHPLYRVAVPPLTEEDVLFNVNSDTRLSPKAAENPDW 202
+ SP G P G + L L A PPL V + S +R +PK + P
Sbjct: 684 PSTPSPYGLSYPQGYS-----LASGQLSPAAAPPLASPSVFTSTLSKSRPTPKPRQRPTL 738
Query: 203 P 203
P
Sbjct: 739 P 739
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 42.7 bits (99), Expect = 0.001
Identities = 40/126 (31%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 41 SGEPGCSC--------AQPAAEVAAPGWAQVRGRPG--EPPAASSAAGDAGWPNKHTLRI 90
SG PGC QP E+ PG ++G PG PP +G G H L+
Sbjct: 1126 SGPPGCPGDHGMPGLRGQPG-EMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKG 1184
Query: 91 LQDFSSDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSES 150
+ + +S L H + P P + RG DPG+ P R PGP S
Sbjct: 1185 QK--GTKGASGL--HDVGPPGPVGIPGLKGERG-DPGSPGISPPGPRGKKGPPGPPGSSG 1239
Query: 151 PPGPGG 156
PPGP G
Sbjct: 1240 PPGPAG 1245
Score = 40.4 bits (93), Expect = 0.005
Identities = 40/135 (29%), Positives = 49/135 (36%), Gaps = 27/135 (20%)
Query: 40 PSGEPGCSCAQPA-AEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDP 98
P G PG Q + ++ PGW +G PG P A G G P KH +S P
Sbjct: 501 PPGPPGLPGRQGSKGDLGLPGWLGTKGDPGPP----GAEGPPGLPGKHG-------ASGP 549
Query: 99 SSN-----------LSSHSLEKLP--PAAEPAERALRGRDPGALRPHDPAHRPLLRD--P 143
N + H E+ P P P + GRD A DP D P
Sbjct: 550 PGNKGAKGDMVVSRVKGHKGERGPDGPPGFPGQPGSHGRDGHAGEKGDPGPPGDHEDATP 609
Query: 144 GPRRSESPPGPGGDA 158
G + P GP G A
Sbjct: 610 GGKGFPGPLGPPGKA 624
Score = 32.0 bits (71), Expect = 1.6
Identities = 38/129 (29%), Positives = 46/129 (35%), Gaps = 23/129 (17%)
Query: 37 GAR-PSGEPGCSCAQPAAEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQD 93
GAR P G G PA+ PG +G PG P P A+G+ G P R
Sbjct: 1066 GARGPKGNKG----DPASHFGPPG---PKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPG 1118
Query: 94 FSSDPSSNLSSHSLEKLPPAAEPAERALRGR--DPGALRPHDPAHRPLLRDPGPRRSESP 151
P S+ P P + + G PG + DP R L DPG
Sbjct: 1119 RPGPPGSS---------GPPGCPGDHGMPGLRGQPGEMG--DPGPRGLQGDPGIPGPPGI 1167
Query: 152 PGPGGDASL 160
GP G L
Sbjct: 1168 KGPSGSPGL 1176
Score = 32.0 bits (71), Expect = 1.6
Identities = 37/133 (27%), Positives = 44/133 (33%), Gaps = 30/133 (22%)
Query: 42 GEPGCSCAQPAAEVAAPGWAQVRGRPGEP----PAASSAAGDAGWPNKHTLRILQDFSSD 97
G G P V PG RG PG P P G G P SS
Sbjct: 1190 GASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPG----------SSG 1239
Query: 98 PS--SNLSSHSLEKLPPAAEPAERALRGRD-----PGALRPHDPAHRPLLRD-------P 143
P + + + + +P P ++ G D PG P P LLR P
Sbjct: 1240 PPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGP--PGLPGSVDLLRGEPGDCGLP 1297
Query: 144 GPRRSESPPGPGG 156
GP PPGP G
Sbjct: 1298 GPPGPPGPPGPPG 1310
Score = 29.6 bits (65), Expect = 8.0
Identities = 39/149 (26%), Positives = 48/149 (32%), Gaps = 35/149 (23%)
Query: 42 GEPGCSCA----QPAAE-----VAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQ 92
G PG +CA P + PG A + GRP P G G P L+ L
Sbjct: 394 GRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKPGSPGLPGAPGLQGLP 453
Query: 93 DFSSDPSS--NLSSHSLE-------KLPPAAEPAERALRGRDPGALRPHDPAHRP----- 138
S S N ++ P E L +PG + P P P
Sbjct: 454 GSSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPPGLPGRQGS 513
Query: 139 -----------LLRDPGPRRSESPPG-PG 155
DPGP +E PPG PG
Sbjct: 514 KGDLGLPGWLGTKGDPGPPGAEGPPGLPG 542
>gi|154937344 complement component 1, q subcomponent-like 2 [Homo
sapiens]
Length = 287
Score = 40.8 bits (94), Expect = 0.003
Identities = 44/140 (31%), Positives = 57/140 (40%), Gaps = 29/140 (20%)
Query: 19 VACALHIALDLLPRLERRGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAG 78
+A L IA+ LL + RGA G AAPG GEPP A +
Sbjct: 1 MALGLLIAVPLLLQAAPRGAAHYEMMGTCRMICDPYTAAPG--------GEPPGAKAQPP 52
Query: 79 DAGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRP 138
P+ L ++QD S++P PP P + +G DPG RP P R
Sbjct: 53 G---PSTAALEVMQDLSANP------------PP---PFIQGPKG-DPG--RPGKPGPRG 91
Query: 139 LLRDPGPRRSESPPGPGGDA 158
+PGP PPG GD+
Sbjct: 92 PPGEPGPPGPRGPPGEKGDS 111
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 39.3 bits (90), Expect = 0.010
Identities = 38/124 (30%), Positives = 50/124 (40%), Gaps = 20/124 (16%)
Query: 35 RRGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDF 94
R A P+G PG PA E APG A RG GEP G G P +R +
Sbjct: 491 RGPAGPNGIPGEK--GPAGERGAPGPAGPRGAAGEP-------GRDGVPGGPGMRGMPGS 541
Query: 95 SSDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRP-LLRDPGPRRSESPPG 153
P S+ P + GR PG P P +P ++ PGP+ ++ PG
Sbjct: 542 PGGPGSD---------GKPGPPGSQGESGR-PGPPGPSGPRGQPGVMGFPGPKGNDGAPG 591
Query: 154 PGGD 157
G+
Sbjct: 592 KNGE 595
Score = 33.5 bits (75), Expect = 0.56
Identities = 36/139 (25%), Positives = 49/139 (35%), Gaps = 27/139 (19%)
Query: 31 PRLERRGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEP--------PAASSAAGDAGW 82
P ER P+G G + +P + PG +RG PG P P + G++G
Sbjct: 505 PAGERGAPGPAGPRGAA-GEPGRD-GVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGR 562
Query: 83 PNKHTLRILQDFSSDPSSNLSSHSLEKLPPA----AEPAERALRGRDPGALRPHDPAHRP 138
P PS + P P + RG PG P P +
Sbjct: 563 PGP----------PGPSGPRGQPGVMGFPGPKGNDGAPGKNGERG-GPGGPGPQGPPGKN 611
Query: 139 LLRDPGPRRSESPPGPGGD 157
+ GP+ P GPGGD
Sbjct: 612 --GETGPQGPPGPTGPGGD 628
Score = 30.8 bits (68), Expect = 3.6
Identities = 38/129 (29%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
Query: 38 ARPSGEPGCSCA-QPAAEVAAPGWAQVRGRPGE-----PPAASSAAGDAGWPNKHTLRIL 91
A PSG PG A P+ G + GRPGE PP AG G+P R
Sbjct: 209 AGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGF 268
Query: 92 QDFSSDPSSNLSSHSLEK---LPPA-AEPAERALRGRDPGALRPHDPAHRPLLRDPGPRR 147
D + + L+ LP P RG RP P + G R
Sbjct: 269 -DGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 148 SESPPGPGG 156
S+ PGP G
Sbjct: 328 SDGQPGPPG 336
Score = 30.4 bits (67), Expect = 4.7
Identities = 30/118 (25%), Positives = 39/118 (33%), Gaps = 6/118 (5%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPS 99
P G+PG P G + G+PG P + P Q S D
Sbjct: 107 PKGDPG-----PPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVK 161
Query: 100 SNLSSHSLEKLP-PAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGG 156
S ++ L P PA P G P P ++ +PG PPGP G
Sbjct: 162 SGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPG 219
Score = 30.4 bits (67), Expect = 4.7
Identities = 36/130 (27%), Positives = 45/130 (34%), Gaps = 17/130 (13%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGE--------PPAASSAAGDAGWPNKHTLRIL 91
P+G+PG A + PG A RG PGE P A G G P R
Sbjct: 772 PAGQPGDKGEGGAPGL--PGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGA 829
Query: 92 QDFSSDPSSNLSSHSLEKLPPAAEPAERALRGR-----DPGALRPHDPAHRPLLRDPGPR 146
+ + PA P + ++G PGA P R L PG
Sbjct: 830 PGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAG--FPGARGLPGPPGSN 887
Query: 147 RSESPPGPGG 156
+ PPGP G
Sbjct: 888 GNPGPPGPSG 897
Score = 30.0 bits (66), Expect = 6.1
Identities = 37/138 (26%), Positives = 41/138 (29%), Gaps = 24/138 (17%)
Query: 40 PSGEPGC-SCAQPAAEVAAPGWAQVRGRPGEP--------------------PAASSAAG 78
P G+PG P APG RG PG P G
Sbjct: 571 PRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKG 630
Query: 79 DAGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRP 138
D G P L+ L P N A P +G D GA P +
Sbjct: 631 DTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKG-DAGA--PGERGPPG 687
Query: 139 LLRDPGPRRSESPPGPGG 156
L PG R PPGP G
Sbjct: 688 LAGAPGLRGGAGPPGPEG 705
Score = 29.6 bits (65), Expect = 8.0
Identities = 37/127 (29%), Positives = 48/127 (37%), Gaps = 23/127 (18%)
Query: 38 ARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSD 97
A SG+ G S PA APG A RG PG P G+ G ++ + F +
Sbjct: 1058 AGKSGDRGES--GPAGPAGAPGPAGSRGAPG-PQGPRGDKGETGERGAAGIKGHRGFPGN 1114
Query: 98 PSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPA--HRPLLRD-----PGPRRSES 150
P + P + PA + PG P P P +D PGP
Sbjct: 1115 PGA----------PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGP---IG 1161
Query: 151 PPGPGGD 157
PPGP G+
Sbjct: 1162 PPGPRGN 1168
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 39.3 bits (90), Expect = 0.010
Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 29/150 (19%)
Query: 35 RRGARPSGEPGCSC-----AQPAAE--VAAPGWAQVRGRPGEP--------------PAA 73
RR P PGC+C QP PG + G+PG P P
Sbjct: 106 RRREAPKTSPGCNCPPVFQGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGP 165
Query: 74 SSAAGDAGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPAAEPAERALRGRD--PGALRP 131
G+ G ++ R + SS P++ SS + E ++ +++G PG P
Sbjct: 166 QGQKGEKGQCGEYPHR--ECLSSMPAALRSSQIIAL---KGEQSQASIQGPPGPPGPPGP 220
Query: 132 HDPAHRPLLRDP-GPRRSESPPGPGGDASL 160
P P L P GP PPGP GD +
Sbjct: 221 SGPLGHPGLPGPMGPPGLPGPPGPKGDPGI 250
Score = 33.1 bits (74), Expect = 0.73
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 17/129 (13%)
Query: 40 PSGEPGCSCAQPAAEVAAP----GWAQVRGRPGE--PPAASSAAGDAGWPNKHTLRILQD 93
P G PG + + P G RG+PG+ PP G G P ++
Sbjct: 414 PPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPG------VKG 467
Query: 94 FSSDPSSNLSSHSLEKLPPAAEPAERALRGR--DPGALRPHDPAHRPLLRDPGPRRSESP 151
+ P S + A P E+ G +PGA P P PGP +
Sbjct: 468 ENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG---PPGPPGLQGV 524
Query: 152 PGPGGDASL 160
PGP G+A L
Sbjct: 525 PGPKGEAGL 533
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 38.5 bits (88), Expect = 0.017
Identities = 42/129 (32%), Positives = 49/129 (37%), Gaps = 24/129 (18%)
Query: 19 VACALHIALDLLPRLERRGARPSGEPGCSCAQPAA---------EVAAPGWAQVRGRPGE 69
VAC + A D+L + G PG A PAA E A+PG G P
Sbjct: 5 VACVDYFAADVLMAISSGAVVHRGRPGPEGAGPAAGLDVRAARREAASPG---TPGPPPP 61
Query: 70 PPAASS-AAGDAGWPNKHTLRILQDFSSDP------SSNLSSHSLEKLP-----PAAEPA 117
PPAAS G A P+ IL D P +S SS S P P A P+
Sbjct: 62 PPAASGPGPGAAAAPHLLAASILADLRGGPGAAPGGASPASSSSAASSPSSGRAPGAAPS 121
Query: 118 ERALRGRDP 126
A R P
Sbjct: 122 AAAKSHRCP 130
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 37.7 bits (86), Expect = 0.029
Identities = 41/159 (25%), Positives = 55/159 (34%), Gaps = 38/159 (23%)
Query: 35 RRGARPSGEPGCSCAQ----PAAEVAAPGWAQVRGRPGEP-------------------- 70
RR P PGC+C P PG RG PG P
Sbjct: 106 RRREAPKTSPGCNCPPAFQGPTGRPGLPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGL 165
Query: 71 ------PAASSAAGDAGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPAAEPAERALRGR 124
P G+ G ++ R + SS P++ SS + E ++ +++G
Sbjct: 166 TGPPGQPGPQGQKGEKGQCGEYPHR--ECLSSMPAALRSSQIIAL---KGEQSQASIQGP 220
Query: 125 D--PGALRPHDPAHRPLLRDP-GPRRSESPPGPGGDASL 160
PG P P P L P GP PPGP GD +
Sbjct: 221 PGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGI 259
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 37.7 bits (86), Expect = 0.029
Identities = 40/118 (33%), Positives = 46/118 (38%), Gaps = 19/118 (16%)
Query: 35 RRGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDF 94
RRGA P P PAA AA P PPA +AA A P R
Sbjct: 103 RRGATPPAPPRAPRGAPAAAAAAA--PPPTPAPPPPPAPVAAAAPARAP-----RAAAAA 155
Query: 95 SSDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDP-GPRRSESP 151
++ P S P A+P RA R P A P PA P + P GPRR+ P
Sbjct: 156 ATAPPS----------PGPAQPGPRAQRAA-PLAAPPPAPAAPPAVAPPAGPRRAPPP 202
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 37.4 bits (85), Expect = 0.038
Identities = 38/130 (29%), Positives = 47/130 (36%), Gaps = 17/130 (13%)
Query: 40 PSGEPGCSCAQPAAE---VAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSS 96
PSG PG A P E + PG + G G+ AG G P + L+ L
Sbjct: 1343 PSGVPGS--AGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGL----- 1395
Query: 97 DPSSNLSSHSLEKLPPAAEPAERALRGRDPGALR------PHDPAHRPLLRDPGPRRSES 150
P P +P L G D R P P R L PGP +
Sbjct: 1396 -PGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQG 1454
Query: 151 PPGPGGDASL 160
PPGP G +S+
Sbjct: 1455 PPGPPGTSSV 1464
Score = 30.0 bits (66), Expect = 6.1
Identities = 34/120 (28%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 42 GEPGCSCAQPAAEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQDFSSDPS 99
GEPG + G +G PG P P S G G P DP
Sbjct: 944 GEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPG------------DPG 991
Query: 100 SNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRD---PGPRRSESPPGPGG 156
S P L G+ PG + P P + + D PGP+ E PPGP G
Sbjct: 992 QPGLSGQPGLPGPPGPKGNPGLPGQ-PGLIGP--PGLKGTIGDMGFPGPQGVEGPPGPSG 1048
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 37.4 bits (85), Expect = 0.038
Identities = 38/130 (29%), Positives = 47/130 (36%), Gaps = 17/130 (13%)
Query: 40 PSGEPGCSCAQPAAE---VAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSS 96
PSG PG A P E + PG + G G+ AG G P + L+ L
Sbjct: 1337 PSGVPGS--AGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGL----- 1389
Query: 97 DPSSNLSSHSLEKLPPAAEPAERALRGRDPGALR------PHDPAHRPLLRDPGPRRSES 150
P P +P L G D R P P R L PGP +
Sbjct: 1390 -PGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQG 1448
Query: 151 PPGPGGDASL 160
PPGP G +S+
Sbjct: 1449 PPGPPGTSSV 1458
Score = 30.0 bits (66), Expect = 6.1
Identities = 34/120 (28%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 42 GEPGCSCAQPAAEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQDFSSDPS 99
GEPG + G +G PG P P S G G P DP
Sbjct: 944 GEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPG------------DPG 991
Query: 100 SNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRD---PGPRRSESPPGPGG 156
S P L G+ PG + P P + + D PGP+ E PPGP G
Sbjct: 992 QPGLSGQPGLPGPPGPKGNPGLPGQ-PGLIGP--PGLKGTIGDMGFPGPQGVEGPPGPSG 1048
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 37.4 bits (85), Expect = 0.038
Identities = 38/130 (29%), Positives = 47/130 (36%), Gaps = 17/130 (13%)
Query: 40 PSGEPGCSCAQPAAE---VAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSS 96
PSG PG A P E + PG + G G+ AG G P + L+ L
Sbjct: 1340 PSGVPGS--AGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGL----- 1392
Query: 97 DPSSNLSSHSLEKLPPAAEPAERALRGRDPGALR------PHDPAHRPLLRDPGPRRSES 150
P P +P L G D R P P R L PGP +
Sbjct: 1393 -PGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQG 1451
Query: 151 PPGPGGDASL 160
PPGP G +S+
Sbjct: 1452 PPGPPGTSSV 1461
Score = 30.0 bits (66), Expect = 6.1
Identities = 34/120 (28%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 42 GEPGCSCAQPAAEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQDFSSDPS 99
GEPG + G +G PG P P S G G P DP
Sbjct: 944 GEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPG------------DPG 991
Query: 100 SNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRD---PGPRRSESPPGPGG 156
S P L G+ PG + P P + + D PGP+ E PPGP G
Sbjct: 992 QPGLSGQPGLPGPPGPKGNPGLPGQ-PGLIGP--PGLKGTIGDMGFPGPQGVEGPPGPSG 1048
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 37.4 bits (85), Expect = 0.038
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 32/153 (20%)
Query: 35 RRGARPSGEPGCSC-----AQPAAE--VAAPGWAQVRGRPGEP--------------PAA 73
RR P PGC+C QP PG + G+PG P P
Sbjct: 106 RRREAPKTSPGCNCPPVFQGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGP 165
Query: 74 SSAAGDAGWPNKHTLRILQDFSS---DPSSNLSSHSLEKLPPAAEPAERALRGRD--PGA 128
G+ G ++ R+L +S P + + + E ++ +++G PG
Sbjct: 166 QGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQ-----GEQSQASIQGPPGPPGP 220
Query: 129 LRPHDPAHRPLLRDP-GPRRSESPPGPGGDASL 160
P P P L P GP PPGP GD +
Sbjct: 221 PGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGI 253
Score = 33.1 bits (74), Expect = 0.73
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 17/129 (13%)
Query: 40 PSGEPGCSCAQPAAEVAAP----GWAQVRGRPGE--PPAASSAAGDAGWPNKHTLRILQD 93
P G PG + + P G RG+PG+ PP G G P ++
Sbjct: 417 PPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPG------VKG 470
Query: 94 FSSDPSSNLSSHSLEKLPPAAEPAERALRGR--DPGALRPHDPAHRPLLRDPGPRRSESP 151
+ P S + A P E+ G +PGA P P PGP +
Sbjct: 471 ENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG---PPGPPGLQGV 527
Query: 152 PGPGGDASL 160
PGP G+A L
Sbjct: 528 PGPKGEAGL 536
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.0 bits (84), Expect = 0.050
Identities = 39/131 (29%), Positives = 50/131 (38%), Gaps = 17/131 (12%)
Query: 40 PSGEPGCSCAQPAAEVAAP-------GWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQ 92
P+G PG A A A P G VRG PG PP + AAG AG P +
Sbjct: 339 PAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG-PPGPAGAAGPAGNPGADGQPGAK 397
Query: 93 DFSSDPS-SNLSSHSLEKLP-----PAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPR 146
+ P + + P P P + G +PGA P +PGP
Sbjct: 398 GANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSG-EPGA--PGSKGDTGAKGEPGPV 454
Query: 147 RSESPPGPGGD 157
+ PPGP G+
Sbjct: 455 GVQGPPGPAGE 465
Score = 33.9 bits (76), Expect = 0.43
Identities = 36/126 (28%), Positives = 46/126 (36%), Gaps = 17/126 (13%)
Query: 42 GEPGCSCAQPAAEVA-APGWAQVRGR-----PGEPPAASSAAGDAGWPNKHTLRILQDFS 95
G+PG A A +A APG+ RG PG PP +G+ G P
Sbjct: 392 GQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKG-------D 444
Query: 96 SDPSSNLSSHSLEKLP-PAAEPAERALRGRDPGALRPHDPAHR--PLLRD-PGPRRSESP 151
+ ++ P PA E +R RG P P R P R PG P
Sbjct: 445 TGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGP 504
Query: 152 PGPGGD 157
GP G+
Sbjct: 505 KGPAGE 510
Score = 32.7 bits (73), Expect = 0.95
Identities = 41/132 (31%), Positives = 47/132 (35%), Gaps = 18/132 (13%)
Query: 40 PSGEPGC-------SCAQPAAEVAAPGWAQVRGRPGEPPAASSAA--GDAG--WPNKHTL 88
P G PG P PG A RG PG P A A G+AG P
Sbjct: 567 PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAG 626
Query: 89 RILQDFSSDPSSNLSSHSLEKLP-PAAEPAERALRGRD--PGALRPHDPAHRPLLRD-PG 144
+ P+ S + LP PA P E G PG L P+ R PG
Sbjct: 627 PAGERGEQGPA---GSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPG 683
Query: 145 PRRSESPPGPGG 156
R + PPGP G
Sbjct: 684 ERGVQGPPGPAG 695
Score = 32.0 bits (71), Expect = 1.6
Identities = 31/121 (25%), Positives = 38/121 (31%), Gaps = 6/121 (4%)
Query: 42 GEPGCSCAQ-PAAEVAAPGWAQVRGRPGE-----PPAASSAAGDAGWPNKHTLRILQDFS 95
GEPG Q P G RG PG PP G G+P + + +
Sbjct: 449 GEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPA 508
Query: 96 SDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPG 155
+ S + A P E L G P P PGP + PGP
Sbjct: 509 GERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPP 568
Query: 156 G 156
G
Sbjct: 569 G 569
Score = 31.2 bits (69), Expect = 2.8
Identities = 34/121 (28%), Positives = 40/121 (33%), Gaps = 41/121 (33%)
Query: 42 GEPGCSCAQPAAEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQDFSSDPS 99
G PG P + PG A GRPG P P A AG G+P
Sbjct: 545 GSPG-----PDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPK------------- 586
Query: 100 SNLSSHSLEKLPPAAEPAERALRG--RDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGD 157
A EP + RG PGA+ P G ++ PPGP G
Sbjct: 587 -----------GAAGEPGKAGERGVPGPPGAVGP--------AGKDGEAGAQGPPGPAGP 627
Query: 158 A 158
A
Sbjct: 628 A 628
Score = 30.8 bits (68), Expect = 3.6
Identities = 37/132 (28%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 31 PRLERRGARPSGEPGCSC----AQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKH 86
P ER P+G PG A P E PG V G G P S A G+ G+P +
Sbjct: 627 PAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAP-GPSGARGERGFPGER 685
Query: 87 TLRILQDFSSDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRD-PGP 145
++ + +N P +G D GA P L+ PG
Sbjct: 686 GVQGPPGPAGPRGAN------------GAPGNDGAKG-DAGAPGAPGSQGAPGLQGMPGE 732
Query: 146 RRSESPPGPGGD 157
R + PGP GD
Sbjct: 733 RGAAGLPGPKGD 744
Score = 30.8 bits (68), Expect = 3.6
Identities = 37/127 (29%), Positives = 46/127 (36%), Gaps = 19/127 (14%)
Query: 40 PSGEPGCSCAQPA----AEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQD 93
PSG G + A+ A E PG A G PG P A GDAG +
Sbjct: 786 PSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAG---------AKG 836
Query: 94 FSSDPSSNLSSHSLEKLPPAAEPAERALRGR--DPGALRPHDPAHRPLLRDPGPRRSESP 151
+ P + + P + RG PGA A R + PGP + P
Sbjct: 837 DAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGR--VGPPGPSGNAGP 894
Query: 152 PGPGGDA 158
PGP G A
Sbjct: 895 PGPPGPA 901
Score = 30.4 bits (67), Expect = 4.7
Identities = 35/127 (27%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGE--PPAASSAAGDAGWPNKHTLRILQDFSS- 96
P G PG P + G A GRPGE PP A G G ++ + FS
Sbjct: 219 PRGPPG-----PPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGL 273
Query: 97 DPSSNLSSHSLEKLPPAAE-----PAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESP 151
D + + + K P + P + RG RP P + G + P
Sbjct: 274 DGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGP 333
Query: 152 PGPGGDA 158
PGP G A
Sbjct: 334 PGPTGPA 340
Score = 29.6 bits (65), Expect = 8.0
Identities = 37/125 (29%), Positives = 42/125 (33%), Gaps = 24/125 (19%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPS 99
P G PG PA E +PG G PG P AG G R + F P
Sbjct: 924 PPGPPG-----PAGEKGSPGADGPAGAPG-TPGPQGIAGQRGVVGLPGQRGERGFPGLPG 977
Query: 100 SNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRP-LLRDPGPRRSESPPG----P 154
P+ EP ++ G G P P P L PG E PG P
Sbjct: 978 ------------PSGEPGKQGPSGAS-GERGPPGPMGPPGLAGPPGESGREGAPGAEGSP 1024
Query: 155 GGDAS 159
G D S
Sbjct: 1025 GRDGS 1029
Score = 29.6 bits (65), Expect = 8.0
Identities = 38/125 (30%), Positives = 45/125 (36%), Gaps = 14/125 (11%)
Query: 42 GEPG-CSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPSS 100
GE G A P V A G A +G G+ + GD G LQ P S
Sbjct: 1067 GETGPAGPAGPVGPVGARGPAGPQGPRGDK-GETGEQGDRGIKGHRGFSGLQGPPGPPGS 1125
Query: 101 -------NLSSHSLEKLPP--AAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESP 151
S + + PP A P + L G PG + P P R D GP P
Sbjct: 1126 PGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGL-PGPIGPPGPRGRT--GDAGPVGPPGP 1182
Query: 152 PGPGG 156
PGP G
Sbjct: 1183 PGPPG 1187
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 37.0 bits (84), Expect = 0.050
Identities = 36/132 (27%), Positives = 46/132 (34%), Gaps = 46/132 (34%)
Query: 34 ERRGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEP-----PAASSAAGDAGWPNKHTL 88
+R P G PG + E PG + + G PG+P P + G+AG P +
Sbjct: 2007 DRGDPGPQGPPGLALG----ERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGE 2062
Query: 89 RILQDFSSDPSSNLSSHSLEKLPPAAEPAERALRGRD-----PGALRPHDPAHRPLLRDP 143
R E ER +GRD PG P P P
Sbjct: 2063 R------------------------GEKGERGEQGRDGPPGLPGTPGPPGP--------P 2090
Query: 144 GPRRSESPPGPG 155
GP+ S PGPG
Sbjct: 2091 GPKVSVDEPGPG 2102
Score = 36.2 bits (82), Expect = 0.086
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 18/131 (13%)
Query: 42 GEPGCSCAQPAAEVAAPGWAQVRGRPGEP-----PAASSAAGDAGWPNKHTLRILQDFSS 96
GEPG + +V PG + GR G P P +++A G+ G+P +
Sbjct: 1257 GEPGEMGLR--GQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAG 1314
Query: 97 DPSSNLSSHSLEKLP----PAAEPAERALRG--RDPGA----LRPHDPAHRPLLRDPGPR 146
+P + + L+ P P +P ER RG +PGA + P DPGP
Sbjct: 1315 NPGTP-GAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPS 1373
Query: 147 RSESPPGPGGD 157
P GP GD
Sbjct: 1374 GPPGPRGPLGD 1384
Score = 35.0 bits (79), Expect = 0.19
Identities = 36/123 (29%), Positives = 42/123 (34%), Gaps = 37/123 (30%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGE-----PPAASSAAGDAGWPNKHTLRILQDF 94
P G PG + +E APG G PGE PP A GD G+P
Sbjct: 1437 PVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPG---------- 1486
Query: 95 SSDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRP-LLRDPGPRRSESPPG 153
P E E+ RG PG P P + PG + E PPG
Sbjct: 1487 -----------------PLGEAGEKGERG-PPG---PAGSRGLPGVAGRPGAKGPEGPPG 1525
Query: 154 PGG 156
P G
Sbjct: 1526 PTG 1528
Score = 34.3 bits (77), Expect = 0.33
Identities = 39/135 (28%), Positives = 49/135 (36%), Gaps = 26/135 (19%)
Query: 37 GARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSS 96
G P G+ G + ++ E PG +RG PG P AG I++ +
Sbjct: 1908 GTGPKGDRGETGSK--GEQGLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDE 1965
Query: 97 DPSSNL---------SSHSLEKLPPAAE-----PAERALRGRDPGALRPHDPAHRPLLRD 142
S L S E+ PP E P ER L+G D G P P
Sbjct: 1966 SSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKG-DRGDPGPQGP-------- 2016
Query: 143 PGPRRSE-SPPGPGG 156
PG E PPGP G
Sbjct: 2017 PGLALGERGPPGPSG 2031
Score = 33.9 bits (76), Expect = 0.43
Identities = 35/125 (28%), Positives = 44/125 (35%), Gaps = 21/125 (16%)
Query: 36 RGAR-PSGEPGCSCAQPAAEVAAPGWAQVRGRPGE--PPAASSAAGDAGWPNKHTLRILQ 92
RG R P GEPG E PG +G PG PP GD G L
Sbjct: 1340 RGPRGPKGEPGAPGQVIGGE--GPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGL---- 1393
Query: 93 DFSSDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPP 152
P + + ++ ER G G + P +P L PGP+ PP
Sbjct: 1394 -----PGTAMKGDKGDR-------GERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPP 1441
Query: 153 GPGGD 157
G G+
Sbjct: 1442 GKKGE 1446
Score = 33.5 bits (75), Expect = 0.56
Identities = 33/127 (25%), Positives = 45/127 (35%), Gaps = 19/127 (14%)
Query: 42 GEPGCSCAQPAAEVAAPGWAQVRGRPGE--------PPAASSAAGDAGWPNKHTLRILQD 93
G+PG P E PG GRPG+ PP + G+ G L+
Sbjct: 2461 GDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLK---- 2516
Query: 94 FSSDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPG 153
+ ++ PP A+ + R P L D R DPG + S+ PG
Sbjct: 2517 ------GDKGDSAVILGPPGPRGAKGDMGERGPRGL-DGDKGPRGDNGDPGDKGSKGEPG 2569
Query: 154 PGGDASL 160
G A L
Sbjct: 2570 DKGSAGL 2576
Score = 32.7 bits (73), Expect = 0.95
Identities = 58/221 (26%), Positives = 68/221 (30%), Gaps = 46/221 (20%)
Query: 40 PSGEPG-------CSCAQPAAEVAAPGWAQVRGRPGEPPAASSAA--------------G 78
P G+PG A P + PG GRPG P G
Sbjct: 1587 PKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPG 1646
Query: 79 DAGWPNKHTLRILQDF------------SSDPSSNLSSHSLEKLPPAAEPAERALRGRDP 126
D G P K R L+ DP + + S P + E G P
Sbjct: 1647 DPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPG-PP 1705
Query: 127 GALRPHDPAHRPLLRDPGPRRSESPPGPGGDASLLARLFEHPLYRVAVPPLTEEDVLFNV 186
G L P R +PG R E P GP GD L E + PP
Sbjct: 1706 GRLVDTGPGAREK-GEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPP--------GP 1756
Query: 187 NSDTRLSPKAAENPDWPHAGAEGAEFL--SPGEAAVDSYPN 225
D + A E D G +G L PG AA S PN
Sbjct: 1757 QGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPG-AAGPSGPN 1796
Score = 32.3 bits (72), Expect = 1.2
Identities = 38/135 (28%), Positives = 47/135 (34%), Gaps = 25/135 (18%)
Query: 31 PRLERRGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGE-------PPAASSAAGDAGWP 83
PR E+ A +GEPG + APG +G PG PP GD G P
Sbjct: 2337 PRGEKGEAGRAGEPGDPGED--GQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLP 2394
Query: 84 NKHTLRILQDFSSDPSSNLSSHSLEKLPPAAEPAERALRGRD--PGALRPHDPAHRPLLR 141
+ F P + + P+ E GR+ PG L P
Sbjct: 2395 GLPGAPGVVGF---PGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGP---------- 2441
Query: 142 DPGPRRSESPPGPGG 156
PGP S PPG G
Sbjct: 2442 -PGPPGSVGPPGASG 2455
Score = 31.2 bits (69), Expect = 2.8
Identities = 38/126 (30%), Positives = 45/126 (35%), Gaps = 23/126 (18%)
Query: 36 RGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFS 95
RG R G PG P APG + G PG P G G P K + S
Sbjct: 1405 RGER--GPPG-----PGEGGIAPGEPGLPGLPGSP----GPQGPVGPPGKKGEK---GDS 1450
Query: 96 SDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRP-LLRDPGPRRSESPPGP 154
D + L P E+ RG PGA+ P P L + G + PPGP
Sbjct: 1451 EDGAPGLPGQP-------GSPGEQGPRG-PPGAIGPKGDRGFPGPLGEAGEKGERGPPGP 1502
Query: 155 GGDASL 160
G L
Sbjct: 1503 AGSRGL 1508
Score = 30.8 bits (68), Expect = 3.6
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 22/141 (15%)
Query: 31 PRLERRGARPSGEPGCSCAQ-PAAEVAAPGWAQVRGRPGE-----PPAASSAAGDAGWPN 84
P+ +R P GE G + P + G V GRPG PP + G+ G P
Sbjct: 1478 PKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPG 1537
Query: 85 KHTLRILQDFSSDPS---SNLSSHSLEK--LPPAAEPAERALRGR--DPGALRPHDPAHR 137
+ DP+ ++ EK + PA ++G PG + P DP +
Sbjct: 1538 R---------PGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPK 1588
Query: 138 PLLRDPGPRRSESPPGPGGDA 158
D GP GP GD+
Sbjct: 1589 GDPGDRGPIGLTGRAGPPGDS 1609
Score = 30.0 bits (66), Expect = 6.1
Identities = 30/116 (25%), Positives = 36/116 (31%), Gaps = 29/116 (25%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPS 99
P GEPG + A A V PG +G PG A G+ G L
Sbjct: 2288 PKGEPGPTGAPGQAVVGLPGAKGEKGAPG--GLAGDLVGEPGAKGDRGL----------- 2334
Query: 100 SNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPG 155
P R +G A P DP PGP+ + PG G
Sbjct: 2335 ----------------PGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVG 2374
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 37.0 bits (84), Expect = 0.050
Identities = 38/131 (29%), Positives = 47/131 (35%), Gaps = 20/131 (15%)
Query: 40 PSGEPGCSCAQ------PAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQD 93
P GEPG C Q P PG V+G PG AA G G P L
Sbjct: 468 PKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAA-GLKGSPGSPGNTGLPGFPG 526
Query: 94 F-SSDPSSNLSSHSLEKLPPAAE---PAERALRGRDPGALRPHDPAHRPLLRDPGPRRSE 149
F + L E L P + P + LRG+ P + L PG +
Sbjct: 527 FPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQ---------PGRKGLDGIPGTPGVK 577
Query: 150 SPPGPGGDASL 160
PGP G+ +L
Sbjct: 578 GLPGPKGELAL 588
Score = 32.7 bits (73), Expect = 0.95
Identities = 40/128 (31%), Positives = 46/128 (35%), Gaps = 22/128 (17%)
Query: 38 ARPSGEPGCSCAQPA--AEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQD 93
A GE G A P A G RG PG P P A GDAG P T ++
Sbjct: 1166 AGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAG-PRGPTG--IEG 1222
Query: 94 FSSDPSSNLSSHSLEKLPPAAEPAERALRGR-----DPGALRPHDPAHRPLLRDPGPRRS 148
F P LP A P + RG PGA P P ++ G + S
Sbjct: 1223 FPGPPG----------LPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGS 1272
Query: 149 ESPPGPGG 156
PGP G
Sbjct: 1273 MGHPGPKG 1280
Score = 32.0 bits (71), Expect = 1.6
Identities = 32/129 (24%), Positives = 42/129 (32%), Gaps = 11/129 (8%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGE-----PPAASSAAGDAGWPNKHTLRILQDF 94
P G PG + + G +G PG PP A G G P Q F
Sbjct: 1255 PPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGF 1314
Query: 95 SSDPSSNLSSHSLEKLPPAAEPAERALRG--RDPGALR----PHDPAHRPLLRDPGPRRS 148
+ L + P + G DPG L+ P P +PG +
Sbjct: 1315 PGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGE 1374
Query: 149 ESPPGPGGD 157
PPGP G+
Sbjct: 1375 PGPPGPPGN 1383
Score = 29.6 bits (65), Expect = 8.0
Identities = 38/135 (28%), Positives = 45/135 (33%), Gaps = 21/135 (15%)
Query: 42 GEPGCSCAQPAAEVAAPGWAQVRGRPGEP-----PAASSAAGDAGWPNKHTLRILQDFSS 96
GE G QP +V PG +RG+PG P G G + L +
Sbjct: 538 GEKG-ETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQG 596
Query: 97 DPSSNLSSHSLEKLPPAAEP-----AERALRGRD--PGALRPHDPA--------HRPLLR 141
P S S PA P E L+G PGA P A P+
Sbjct: 597 PPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPG 656
Query: 142 DPGPRRSESPPGPGG 156
PGP PGP G
Sbjct: 657 PPGPPGPPGHPGPQG 671
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 37.0 bits (84), Expect = 0.050
Identities = 38/131 (29%), Positives = 47/131 (35%), Gaps = 20/131 (15%)
Query: 40 PSGEPGCSCAQ------PAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQD 93
P GEPG C Q P PG V+G PG AA G G P L
Sbjct: 468 PKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAA-GLKGSPGSPGNTGLPGFPG 526
Query: 94 F-SSDPSSNLSSHSLEKLPPAAE---PAERALRGRDPGALRPHDPAHRPLLRDPGPRRSE 149
F + L E L P + P + LRG+ P + L PG +
Sbjct: 527 FPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQ---------PGRKGLDGIPGTPGVK 577
Query: 150 SPPGPGGDASL 160
PGP G+ +L
Sbjct: 578 GLPGPKGELAL 588
Score = 32.7 bits (73), Expect = 0.95
Identities = 40/128 (31%), Positives = 46/128 (35%), Gaps = 22/128 (17%)
Query: 38 ARPSGEPGCSCAQPA--AEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQD 93
A GE G A P A G RG PG P P A GDAG P T ++
Sbjct: 1166 AGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAG-PRGPTG--IEG 1222
Query: 94 FSSDPSSNLSSHSLEKLPPAAEPAERALRGR-----DPGALRPHDPAHRPLLRDPGPRRS 148
F P LP A P + RG PGA P P ++ G + S
Sbjct: 1223 FPGPPG----------LPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGS 1272
Query: 149 ESPPGPGG 156
PGP G
Sbjct: 1273 MGHPGPKG 1280
Score = 32.0 bits (71), Expect = 1.6
Identities = 32/129 (24%), Positives = 42/129 (32%), Gaps = 11/129 (8%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGE-----PPAASSAAGDAGWPNKHTLRILQDF 94
P G PG + + G +G PG PP A G G P Q F
Sbjct: 1255 PPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGF 1314
Query: 95 SSDPSSNLSSHSLEKLPPAAEPAERALRG--RDPGALR----PHDPAHRPLLRDPGPRRS 148
+ L + P + G DPG L+ P P +PG +
Sbjct: 1315 PGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGE 1374
Query: 149 ESPPGPGGD 157
PPGP G+
Sbjct: 1375 PGPPGPPGN 1383
Score = 29.6 bits (65), Expect = 8.0
Identities = 38/135 (28%), Positives = 45/135 (33%), Gaps = 21/135 (15%)
Query: 42 GEPGCSCAQPAAEVAAPGWAQVRGRPGEP-----PAASSAAGDAGWPNKHTLRILQDFSS 96
GE G QP +V PG +RG+PG P G G + L +
Sbjct: 538 GEKG-ETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQG 596
Query: 97 DPSSNLSSHSLEKLPPAAEP-----AERALRGRD--PGALRPHDPA--------HRPLLR 141
P S S PA P E L+G PGA P A P+
Sbjct: 597 PPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPG 656
Query: 142 DPGPRRSESPPGPGG 156
PGP PGP G
Sbjct: 657 PPGPPGPPGHPGPQG 671
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 37.0 bits (84), Expect = 0.050
Identities = 38/131 (29%), Positives = 47/131 (35%), Gaps = 20/131 (15%)
Query: 40 PSGEPGCSCAQ------PAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQD 93
P GEPG C Q P PG V+G PG AA G G P L
Sbjct: 468 PKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAA-GLKGSPGSPGNTGLPGFPG 526
Query: 94 F-SSDPSSNLSSHSLEKLPPAAE---PAERALRGRDPGALRPHDPAHRPLLRDPGPRRSE 149
F + L E L P + P + LRG+ P + L PG +
Sbjct: 527 FPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQ---------PGRKGLDGIPGTPGVK 577
Query: 150 SPPGPGGDASL 160
PGP G+ +L
Sbjct: 578 GLPGPKGELAL 588
Score = 32.7 bits (73), Expect = 0.95
Identities = 40/128 (31%), Positives = 46/128 (35%), Gaps = 22/128 (17%)
Query: 38 ARPSGEPGCSCAQPA--AEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQD 93
A GE G A P A G RG PG P P A GDAG P T ++
Sbjct: 1166 AGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAG-PRGPTG--IEG 1222
Query: 94 FSSDPSSNLSSHSLEKLPPAAEPAERALRGR-----DPGALRPHDPAHRPLLRDPGPRRS 148
F P LP A P + RG PGA P P ++ G + S
Sbjct: 1223 FPGPPG----------LPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGS 1272
Query: 149 ESPPGPGG 156
PGP G
Sbjct: 1273 MGHPGPKG 1280
Score = 32.0 bits (71), Expect = 1.6
Identities = 32/129 (24%), Positives = 42/129 (32%), Gaps = 11/129 (8%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGE-----PPAASSAAGDAGWPNKHTLRILQDF 94
P G PG + + G +G PG PP A G G P Q F
Sbjct: 1255 PPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGF 1314
Query: 95 SSDPSSNLSSHSLEKLPPAAEPAERALRG--RDPGALR----PHDPAHRPLLRDPGPRRS 148
+ L + P + G DPG L+ P P +PG +
Sbjct: 1315 PGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGE 1374
Query: 149 ESPPGPGGD 157
PPGP G+
Sbjct: 1375 PGPPGPPGN 1383
Score = 29.6 bits (65), Expect = 8.0
Identities = 38/135 (28%), Positives = 45/135 (33%), Gaps = 21/135 (15%)
Query: 42 GEPGCSCAQPAAEVAAPGWAQVRGRPGEP-----PAASSAAGDAGWPNKHTLRILQDFSS 96
GE G QP +V PG +RG+PG P G G + L +
Sbjct: 538 GEKG-ETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQG 596
Query: 97 DPSSNLSSHSLEKLPPAAEP-----AERALRGRD--PGALRPHDPA--------HRPLLR 141
P S S PA P E L+G PGA P A P+
Sbjct: 597 PPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPG 656
Query: 142 DPGPRRSESPPGPGG 156
PGP PGP G
Sbjct: 657 PPGPPGPPGHPGPQG 671
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 37.0 bits (84), Expect = 0.050
Identities = 38/131 (29%), Positives = 47/131 (35%), Gaps = 20/131 (15%)
Query: 40 PSGEPGCSCAQ------PAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQD 93
P GEPG C Q P PG V+G PG AA G G P L
Sbjct: 468 PKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAA-GLKGSPGSPGNTGLPGFPG 526
Query: 94 F-SSDPSSNLSSHSLEKLPPAAE---PAERALRGRDPGALRPHDPAHRPLLRDPGPRRSE 149
F + L E L P + P + LRG+ P + L PG +
Sbjct: 527 FPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQ---------PGRKGLDGIPGTPGVK 577
Query: 150 SPPGPGGDASL 160
PGP G+ +L
Sbjct: 578 GLPGPKGELAL 588
Score = 32.7 bits (73), Expect = 0.95
Identities = 40/128 (31%), Positives = 46/128 (35%), Gaps = 22/128 (17%)
Query: 38 ARPSGEPGCSCAQPA--AEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQD 93
A GE G A P A G RG PG P P A GDAG P T ++
Sbjct: 1166 AGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAG-PRGPTG--IEG 1222
Query: 94 FSSDPSSNLSSHSLEKLPPAAEPAERALRGR-----DPGALRPHDPAHRPLLRDPGPRRS 148
F P LP A P + RG PGA P P ++ G + S
Sbjct: 1223 FPGPPG----------LPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGS 1272
Query: 149 ESPPGPGG 156
PGP G
Sbjct: 1273 MGHPGPKG 1280
Score = 32.0 bits (71), Expect = 1.6
Identities = 32/129 (24%), Positives = 42/129 (32%), Gaps = 11/129 (8%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGE-----PPAASSAAGDAGWPNKHTLRILQDF 94
P G PG + + G +G PG PP A G G P Q F
Sbjct: 1255 PPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGF 1314
Query: 95 SSDPSSNLSSHSLEKLPPAAEPAERALRG--RDPGALR----PHDPAHRPLLRDPGPRRS 148
+ L + P + G DPG L+ P P +PG +
Sbjct: 1315 PGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGE 1374
Query: 149 ESPPGPGGD 157
PPGP G+
Sbjct: 1375 PGPPGPPGN 1383
Score = 29.6 bits (65), Expect = 8.0
Identities = 38/135 (28%), Positives = 45/135 (33%), Gaps = 21/135 (15%)
Query: 42 GEPGCSCAQPAAEVAAPGWAQVRGRPGEP-----PAASSAAGDAGWPNKHTLRILQDFSS 96
GE G QP +V PG +RG+PG P G G + L +
Sbjct: 538 GEKG-ETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQG 596
Query: 97 DPSSNLSSHSLEKLPPAAEP-----AERALRGRD--PGALRPHDPA--------HRPLLR 141
P S S PA P E L+G PGA P A P+
Sbjct: 597 PPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPG 656
Query: 142 DPGPRRSESPPGPGG 156
PGP PGP G
Sbjct: 657 PPGPPGPPGHPGPQG 671
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 36.6 bits (83), Expect = 0.066
Identities = 32/119 (26%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 40 PSGEPGCSCAQ-PAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDP 98
PSG PG Q P + PG +G PGE AG+ G P + + +
Sbjct: 1259 PSGAPGADGPQGPPGGIGNPGAVGEKGEPGE-------AGEPGLPGEGGPPGPKGERGEK 1311
Query: 99 SSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGD 157
+ S + P P + +G P DP +PGP + PPG GD
Sbjct: 1312 GESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPG---EPGPAGQDGPPGDKGD 1367
Score = 34.7 bits (78), Expect = 0.25
Identities = 47/163 (28%), Positives = 50/163 (30%), Gaps = 51/163 (31%)
Query: 31 PRLERRGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRI 90
P ER P G PG E PG A G G+P G AG P K
Sbjct: 1010 PMGERGHPGPPGPPG--------EQGLPGLAGKEGTKGDP-------GPAGLPGKDGPPG 1054
Query: 91 LQDFSSD-----PSSNLSSHSLEKLP----PAAEPAERALRGRD---------------- 125
L+ F D P L E P PA P ER G
Sbjct: 1055 LRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPG 1114
Query: 126 -------PGALRPHDPAHRPLLRDP----GPRRSESPPGPGGD 157
PG P PA R L+ P GP PPG GD
Sbjct: 1115 PAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGD 1157
Score = 33.1 bits (74), Expect = 0.73
Identities = 37/131 (28%), Positives = 48/131 (36%), Gaps = 27/131 (20%)
Query: 32 RLERRGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGE-----PPAASSAAGDAGWPNKH 86
RL RG P+G G + +P V PG ++G PG+ P G AG P +
Sbjct: 554 RLALRG--PAGPMGLT-GRPGP-VGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRR 609
Query: 87 TLRILQDFSSDPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPR 146
S +P P + RG D A P + HR DPGP
Sbjct: 610 -------------GRAGSDGARGMPGQTGP--KGDRGFDGLAGLPGEKGHRG---DPGPS 651
Query: 147 RSESPPGPGGD 157
PPG G+
Sbjct: 652 GPPGPPGDDGE 662
Score = 31.2 bits (69), Expect = 2.8
Identities = 37/132 (28%), Positives = 46/132 (34%), Gaps = 18/132 (13%)
Query: 40 PSGEPGCSCAQ-PAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDP 98
P+G PG P +V PG GRPG P A G G R +
Sbjct: 476 PAGLPGPPGTMGPTGQVGDPGERGPPGRPG-LPGADGLPGPPGTMLMLPFRFGGGGDAGS 534
Query: 99 SSNLSSHSLEKLPPAAEPAERALRG--------RDPGALRPHDPAHRPLLRDP------G 144
+ S + + A ALRG PG + P P L +P G
Sbjct: 535 KGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGP--PGSGGLKGEPGDVGPQG 592
Query: 145 PRRSESPPGPGG 156
PR + PPGP G
Sbjct: 593 PRGVQGPPGPAG 604
Score = 29.6 bits (65), Expect = 8.0
Identities = 37/128 (28%), Positives = 43/128 (33%), Gaps = 23/128 (17%)
Query: 42 GEPGCSCAQ-PAAEVAAPGWAQVRGRPGEP--------PAASSAAGDAGWPNKHTLRILQ 92
GEPG Q P PG A GR G P + GD G+ L +
Sbjct: 583 GEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEK 642
Query: 93 DFSSDPSSNLSSHSLEKLPPAAEPAERALRGRD----PGALRPHDPAHRPLLRDPGPRRS 148
DP + P P + RG D P L P +P R LL GP
Sbjct: 643 GHRGDPGPS---------GPPGPPGDDGERGDDGEVGPRGL-PGEPGPRGLLGPKGPPGP 692
Query: 149 ESPPGPGG 156
PPG G
Sbjct: 693 PGPPGVTG 700
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 36.2 bits (82), Expect = 0.086
Identities = 47/164 (28%), Positives = 57/164 (34%), Gaps = 29/164 (17%)
Query: 44 PGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPSSNLS 103
P S +P+A AP RPG PP S++G N T R+ P NLS
Sbjct: 293 PVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSG-----NDETPRL-------PQRNLS 340
Query: 104 SHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGDASLLAR 163
S PP P GR P P +RDP R PP P ++R
Sbjct: 341 LSS--STPPLPSP------GRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPP-----VSR 387
Query: 164 LFEHPLYRVAVPPLTEEDVLFNVNSDTRLSPKAAENPDWPHAGA 207
A P L + R P+ PD P AGA
Sbjct: 388 NGSTSRALPATPQLPSRSGV----DSPRSGPRPPLPPDRPSAGA 427
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 36.2 bits (82), Expect = 0.086
Identities = 47/164 (28%), Positives = 57/164 (34%), Gaps = 29/164 (17%)
Query: 44 PGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPSSNLS 103
P S +P+A AP RPG PP S++G N T R+ P NLS
Sbjct: 293 PVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSG-----NDETPRL-------PQRNLS 340
Query: 104 SHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGDASLLAR 163
S PP P GR P P +RDP R PP P ++R
Sbjct: 341 LSS--STPPLPSP------GRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPP-----VSR 387
Query: 164 LFEHPLYRVAVPPLTEEDVLFNVNSDTRLSPKAAENPDWPHAGA 207
A P L + R P+ PD P AGA
Sbjct: 388 NGSTSRALPATPQLPSRSGV----DSPRSGPRPPLPPDRPSAGA 427
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 36.2 bits (82), Expect = 0.086
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 46 CSCAQPAAEVAAPGWAQVRGRPGEPPAASSAA-GDAGWPNKHTLRILQDFSSDPSSNLSS 104
C P AE G + +G P PPA+ A+ +AG + ++ +++PSS+ S+
Sbjct: 160 CGGGDPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAE-----AEEENTNPSSSGSA 214
Query: 105 HSLEKLPP--AAEPAERALRGRDP 126
HS+ K P AA A R + R P
Sbjct: 215 HSVAKEPAKGAAPNAPRTRKKRCP 238
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 36.2 bits (82), Expect = 0.086
Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 38 ARPSGEPGCS-CAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSS 96
+RP EP C P A PG ++ + G PP AS+ A A P + LR S
Sbjct: 811 SRPPSEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPPLR---PQSQ 867
Query: 97 DPSSNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDP--GPRRSESPP 152
P L LPP++ + A L P+ L P GP +S +PP
Sbjct: 868 PPEGPLP--PAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFPPSQGPHKSPTPP 923
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 35.8 bits (81), Expect = 0.11
Identities = 48/171 (28%), Positives = 63/171 (36%), Gaps = 16/171 (9%)
Query: 58 PGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPAAEPA 117
PG G+P P AA + G A N H ++ P+ +L ++ L P +PA
Sbjct: 180 PGPGPGPGKPAGPGAAQTLNGSAALLNSH-------HAAAPAVSLVNNGPAALLPLPKPA 232
Query: 118 ERALRGRDP---GALRPHDPAHRPLLRDPGPRR-SESPPGPGGDASLLARLFEHPLYRVA 173
+ P GA P PA P P + +PP P + LAR HP A
Sbjct: 233 APGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHP----A 288
Query: 174 VPPLTEEDVLFNVNSDTRLSPKAAENPDWPHAGAEGAEFLSPGEAAVDSYP 224
PP V + S AA P P AG PG A + P
Sbjct: 289 GPPTAAPAVPPPAAAQNGGSAGAAPAPA-PAAGGPAGVSGQPGPGAAAAAP 338
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 35.4 bits (80), Expect = 0.15
Identities = 34/109 (31%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
Query: 58 PGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPA-- 113
PG + GRPG P +S A G++G P R +Q P P A
Sbjct: 543 PGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQG----PPGPTGKPGKRGRPGADG 598
Query: 114 -----AEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGD 157
EP + RG D P D HR G R + PPGP GD
Sbjct: 599 GRGMPGEPGAKGDRGFDGLPGLPGDKGHR------GERGPQGPPGPPGD 641
Score = 32.7 bits (73), Expect = 0.95
Identities = 38/146 (26%), Positives = 47/146 (32%), Gaps = 22/146 (15%)
Query: 31 PRLERRGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEP-----------PAASSAAGD 79
P + G G PG A PA + PG G PG+P P A G
Sbjct: 443 PAVVEPGMLVEGPPGP--AGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGP 500
Query: 80 AGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPAAE------PAERALRGRDPGALRPHD 133
G R D S P+ + + + A P L GR P
Sbjct: 501 PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS 560
Query: 134 PAHRPLLRDPGP---RRSESPPGPGG 156
+ DPGP R + PPGP G
Sbjct: 561 SGAKGESGDPGPQGPRGVQGPPGPTG 586
Score = 31.2 bits (69), Expect = 2.8
Identities = 34/130 (26%), Positives = 38/130 (29%), Gaps = 20/130 (15%)
Query: 37 GARPSGEPG-CSCAQPAAEVAAPGWAQVRGRPGE--PPAASSAAGDAGWPNKHTLRILQD 93
G GEPG P E G RG GE PP A+ G G P
Sbjct: 1262 GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG--------- 1312
Query: 94 FSSDPSSNLSSHSLEKLP-------PAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPR 146
P N P PA + +G D +P P PGP
Sbjct: 1313 -DDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPP 1371
Query: 147 RSESPPGPGG 156
PPG G
Sbjct: 1372 GKRGPPGAAG 1381
Score = 30.4 bits (67), Expect = 4.7
Identities = 32/132 (24%), Positives = 47/132 (35%), Gaps = 20/132 (15%)
Query: 38 ARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQDFS 95
A P+G+PG P+ + G V G PG P + G G+P + + + +
Sbjct: 831 AGPTGDPG-----PSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVA 885
Query: 96 SDPSSNLSSH------SLEKLPPAAEPAERALRGRD-----PGALRPHDPAHRPLLRDPG 144
P S P +P + G D PG P P + + PG
Sbjct: 886 GKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGP--QGPVGFPG 943
Query: 145 PRRSESPPGPGG 156
P+ PPG G
Sbjct: 944 PKGPPGPPGKDG 955
Score = 30.0 bits (66), Expect = 6.1
Identities = 35/121 (28%), Positives = 41/121 (33%), Gaps = 30/121 (24%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPS 99
PSGE G P + PG A GR GE A AG G P K
Sbjct: 1361 PSGEAGPP--GPPGKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGK-------------- 1403
Query: 100 SNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGDAS 159
+ + PA +P LRG PG + PG + PPGP G
Sbjct: 1404 ----TGPVGPQGPAGKPGPEGLRGI-PGPVGEQGL--------PGAAGQDGPPGPMGPPG 1450
Query: 160 L 160
L
Sbjct: 1451 L 1451
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 35.4 bits (80), Expect = 0.15
Identities = 34/109 (31%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
Query: 58 PGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPA-- 113
PG + GRPG P +S A G++G P R +Q P P A
Sbjct: 492 PGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQG----PPGPTGKPGKRGRPGADG 547
Query: 114 -----AEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGD 157
EP + RG D P D HR G R + PPGP GD
Sbjct: 548 GRGMPGEPGAKGDRGFDGLPGLPGDKGHR------GERGPQGPPGPPGD 590
Score = 32.7 bits (73), Expect = 0.95
Identities = 38/146 (26%), Positives = 47/146 (32%), Gaps = 22/146 (15%)
Query: 31 PRLERRGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEP-----------PAASSAAGD 79
P + G G PG A PA + PG G PG+P P A G
Sbjct: 392 PAVVEPGMLVEGPPGP--AGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGP 449
Query: 80 AGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPAAE------PAERALRGRDPGALRPHD 133
G R D S P+ + + + A P L GR P
Sbjct: 450 PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS 509
Query: 134 PAHRPLLRDPGP---RRSESPPGPGG 156
+ DPGP R + PPGP G
Sbjct: 510 SGAKGESGDPGPQGPRGVQGPPGPTG 535
Score = 31.2 bits (69), Expect = 2.8
Identities = 34/130 (26%), Positives = 38/130 (29%), Gaps = 20/130 (15%)
Query: 37 GARPSGEPG-CSCAQPAAEVAAPGWAQVRGRPGE--PPAASSAAGDAGWPNKHTLRILQD 93
G GEPG P E G RG GE PP A+ G G P
Sbjct: 1211 GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG--------- 1261
Query: 94 FSSDPSSNLSSHSLEKLP-------PAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPR 146
P N P PA + +G D +P P PGP
Sbjct: 1262 -DDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPP 1320
Query: 147 RSESPPGPGG 156
PPG G
Sbjct: 1321 GKRGPPGAAG 1330
Score = 30.4 bits (67), Expect = 4.7
Identities = 32/132 (24%), Positives = 47/132 (35%), Gaps = 20/132 (15%)
Query: 38 ARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQDFS 95
A P+G+PG P+ + G V G PG P + G G+P + + + +
Sbjct: 780 AGPTGDPG-----PSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVA 834
Query: 96 SDPSSNLSSH------SLEKLPPAAEPAERALRGRD-----PGALRPHDPAHRPLLRDPG 144
P S P +P + G D PG P P + + PG
Sbjct: 835 GKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGP--QGPVGFPG 892
Query: 145 PRRSESPPGPGG 156
P+ PPG G
Sbjct: 893 PKGPPGPPGKDG 904
Score = 30.0 bits (66), Expect = 6.1
Identities = 35/121 (28%), Positives = 41/121 (33%), Gaps = 30/121 (24%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPS 99
PSGE G P + PG A GR GE A AG G P K
Sbjct: 1310 PSGEAGPP--GPPGKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGK-------------- 1352
Query: 100 SNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGDAS 159
+ + PA +P LRG PG + PG + PPGP G
Sbjct: 1353 ----TGPVGPQGPAGKPGPEGLRGI-PGPVGEQGL--------PGAAGQDGPPGPMGPPG 1399
Query: 160 L 160
L
Sbjct: 1400 L 1400
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 35.4 bits (80), Expect = 0.15
Identities = 34/109 (31%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
Query: 58 PGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPA-- 113
PG + GRPG P +S A G++G P R +Q P P A
Sbjct: 531 PGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQG----PPGPTGKPGKRGRPGADG 586
Query: 114 -----AEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGD 157
EP + RG D P D HR G R + PPGP GD
Sbjct: 587 GRGMPGEPGAKGDRGFDGLPGLPGDKGHR------GERGPQGPPGPPGD 629
Score = 32.7 bits (73), Expect = 0.95
Identities = 38/146 (26%), Positives = 47/146 (32%), Gaps = 22/146 (15%)
Query: 31 PRLERRGARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEP-----------PAASSAAGD 79
P + G G PG A PA + PG G PG+P P A G
Sbjct: 431 PAVVEPGMLVEGPPGP--AGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGP 488
Query: 80 AGWPNKHTLRILQDFSSDPSSNLSSHSLEKLPPAAE------PAERALRGRDPGALRPHD 133
G R D S P+ + + + A P L GR P
Sbjct: 489 PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS 548
Query: 134 PAHRPLLRDPGP---RRSESPPGPGG 156
+ DPGP R + PPGP G
Sbjct: 549 SGAKGESGDPGPQGPRGVQGPPGPTG 574
Score = 31.2 bits (69), Expect = 2.8
Identities = 34/130 (26%), Positives = 38/130 (29%), Gaps = 20/130 (15%)
Query: 37 GARPSGEPG-CSCAQPAAEVAAPGWAQVRGRPGE--PPAASSAAGDAGWPNKHTLRILQD 93
G GEPG P E G RG GE PP A+ G G P
Sbjct: 1250 GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG--------- 1300
Query: 94 FSSDPSSNLSSHSLEKLP-------PAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPR 146
P N P PA + +G D +P P PGP
Sbjct: 1301 -DDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPP 1359
Query: 147 RSESPPGPGG 156
PPG G
Sbjct: 1360 GKRGPPGAAG 1369
Score = 30.4 bits (67), Expect = 4.7
Identities = 32/132 (24%), Positives = 47/132 (35%), Gaps = 20/132 (15%)
Query: 38 ARPSGEPGCSCAQPAAEVAAPGWAQVRGRPGEP--PAASSAAGDAGWPNKHTLRILQDFS 95
A P+G+PG P+ + G V G PG P + G G+P + + + +
Sbjct: 819 AGPTGDPG-----PSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVA 873
Query: 96 SDPSSNLSSH------SLEKLPPAAEPAERALRGRD-----PGALRPHDPAHRPLLRDPG 144
P S P +P + G D PG P P + + PG
Sbjct: 874 GKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGP--QGPVGFPG 931
Query: 145 PRRSESPPGPGG 156
P+ PPG G
Sbjct: 932 PKGPPGPPGKDG 943
Score = 30.0 bits (66), Expect = 6.1
Identities = 35/121 (28%), Positives = 41/121 (33%), Gaps = 30/121 (24%)
Query: 40 PSGEPGCSCAQPAAEVAAPGWAQVRGRPGEPPAASSAAGDAGWPNKHTLRILQDFSSDPS 99
PSGE G P + PG A GR GE A AG G P K
Sbjct: 1349 PSGEAGPP--GPPGKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGK-------------- 1391
Query: 100 SNLSSHSLEKLPPAAEPAERALRGRDPGALRPHDPAHRPLLRDPGPRRSESPPGPGGDAS 159
+ + PA +P LRG PG + PG + PPGP G
Sbjct: 1392 ----TGPVGPQGPAGKPGPEGLRGI-PGPVGEQGL--------PGAAGQDGPPGPMGPPG 1438
Query: 160 L 160
L
Sbjct: 1439 L 1439
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,587,614
Number of Sequences: 37866
Number of extensions: 1318366
Number of successful extensions: 6189
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 222
Number of HSP's that attempted gapping in prelim test: 5461
Number of HSP's gapped (non-prelim): 850
length of query: 584
length of database: 18,247,518
effective HSP length: 108
effective length of query: 476
effective length of database: 14,157,990
effective search space: 6739203240
effective search space used: 6739203240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.