Guide to the Human Genome
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Name: FAM20C Sequence: fasta or formatted (584aa) NCBI GI: 116174742
Description:

family with sequence similarity 20, member C

Referenced in:

Additional Conserved Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         53           2
 C cysteine            1.9         11           2
 D aspartate           6.3         37           3
 E glutamate           6.7         39           2
 F phenylalanine       4.1         24           2
 G glycine             5.5         32           2
 H histidine           3.8         22           2
 I isoleucine          3.4         20           2
 K lysine              4.3         25           2
 L leucine            10.8         63           2
 M methionine          2.4         14           2
 N asparagine          3.1         18           2
 P proline             7.9         46           2
 Q glutamine           2.7         16           2
 R arginine            8.9         52           2
 S serine              6.7         39           2
 T threonine           3.3         19           1
 V valine              4.8         28           2
 W tryptophan          1.4          8           1
 Y tyrosine            3.1         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 20, member C 
FAM20A                0.350   family with sequence similarity 20, member A 
FAM20B                0.211   hypothetical protein LOC9917 
RICH2                 0.016   Rho GTPase-activating protein RICH2 
COL4A4                0.015   alpha 4 type IV collagen precursor 
C1QL2                 0.014   complement component 1, q subcomponent-like 2 [Homo...
COL3A1                0.012   collagen type III alpha 1 preproprotein 
COL13A1               0.012   alpha 1 type XIII collagen isoform 17 
KLF16                 0.012   BTE-binding protein 4 
COL13A1               0.011   alpha 1 type XIII collagen isoform 19 
SAMD1                 0.011   sterile alpha motif domain containing 1 
COL4A5                0.010   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.010   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.010   type IV collagen alpha 5 isoform 3 precursor 
COL13A1               0.010   alpha 1 type XIII collagen isoform 16 
COL1A1                0.010   alpha 1 type I collagen preproprotein 
COL7A1                0.010   alpha 1 type VII collagen precursor 
COL4A3                0.010   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.010   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.010   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.010   alpha 3 type IV collagen isoform 1 precursor 
COL5A1                0.010   alpha 1 type V collagen preproprotein 
WIPF1                 0.009   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.009   WAS/WASL interacting protein family, member 1 
HOXC11                0.009   homeobox C11 
GLTSCR1               0.009   glioma tumor suppressor candidate region gene 1 [Ho...
TAF4                  0.009   TBP-associated factor 4 
COL11A1               0.008   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.008   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.008   alpha 1 type XI collagen isoform A preproprotein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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