Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM20B Sequence: fasta or formatted (409aa) NCBI GI: 7662150
Description:

hypothetical protein LOC9917

Referenced in:

Additional Conserved Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         32           2
 C cysteine            2.0          8           2
 D aspartate           7.1         29           2
 E glutamate           5.6         23           2
 F phenylalanine       3.4         14           1
 G glycine             5.4         22           2
 H histidine           3.4         14           2
 I isoleucine          4.6         19           2
 K lysine              5.6         23           2
 L leucine            11.7         48           2
 M methionine          2.4         10           2
 N asparagine          2.9         12           2
 P proline             5.1         21           1
 Q glutamine           3.2         13           1
 R arginine            6.1         25           1
 S serine              4.9         20           1
 T threonine           5.1         21           1
 V valine              7.8         32           2
 W tryptophan          1.7          7           1
 Y tyrosine            3.9         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC9917 
FAM20C                0.307   family with sequence similarity 20, member C 
FAM20A                0.257   family with sequence similarity 20, member A 
NRAS                  0.009   neuroblastoma RAS viral (v-ras) oncogene homolog [Hom...
KRAS                  0.006   c-K-ras2 protein isoform a precursor 
KRAS                  0.006   c-K-ras2 protein isoform b precursor 
HRAS                  0.006   v-Ha-ras Harvey rat sarcoma viral oncogene homolog ...
HRAS                  0.006   v-Ha-ras Harvey rat sarcoma viral oncogene homolog i...
HRAS                  0.006   v-Ha-ras Harvey rat sarcoma viral oncogene homolog is...
CLPTM1                0.006   cleft lip and palate associated transmembrane protein...
RAP2B                 0.005   RAP2B, member of RAS oncogene family 
RAP2A                 0.005   RAP2A, member of RAS oncogene family 
RAP2C                 0.005   RAP2C, member of RAS oncogene family 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press