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Search of human proteins with 226958625
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226958625 hypothetical protein LOC414236 [Homo sapiens]
(151 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226958625 hypothetical protein LOC414236 [Homo sapiens] 323 3e-89
gi|28872814 semaphorin 4G [Homo sapiens] 40 0.001
gi|70608170 H6 family homeobox 2 [Homo sapiens] 36 0.014
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 32 0.16
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 32 0.16
gi|112421108 capicua homolog [Homo sapiens] 32 0.16
gi|239747320 PREDICTED: forkhead box protein O6 [Homo sapiens] 32 0.27
gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2 ... 32 0.27
gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ... 32 0.27
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 31 0.35
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 31 0.35
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 31 0.35
gi|4506049 hematopoietically expressed homeobox [Homo sapiens] 31 0.46
gi|169210554 PREDICTED: FLJ44904 protein [Homo sapiens] 31 0.46
gi|13699803 WAS protein family, member 3 [Homo sapiens] 31 0.46
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 30 0.60
gi|169212085 PREDICTED: similar to poly(A) binding protein inter... 30 0.60
gi|17511435 roundabout homolog 4, magic roundabout [Homo sapiens] 30 0.60
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 30 0.60
gi|40353727 synaptopodin isoform A [Homo sapiens] 30 0.78
gi|239756593 PREDICTED: UPF0607 protein ENSP00000381418-like [Ho... 30 1.0
gi|239751148 PREDICTED: hypothetical protein XP_002347729 [Homo ... 30 1.0
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 30 1.0
gi|113426153 PREDICTED: UPF0607 protein ENSP00000381418-like [Ho... 30 1.0
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ... 30 1.0
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 30 1.0
gi|120952764 mastermind-like domain containing 1 [Homo sapiens] 30 1.0
gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens] 30 1.0
gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens] 30 1.0
gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo sa... 30 1.0
>gi|226958625 hypothetical protein LOC414236 [Homo sapiens]
Length = 151
Score = 323 bits (829), Expect = 3e-89
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MFLHLDSHSSLERTKPTVVGVDTHMELDEVHCCPGRDSGGGFIKGPMLQGLQGEGKLAPI 60
MFLHLDSHSSLERTKPTVVGVDTHMELDEVHCCPGRDSGGGFIKGPMLQGLQGEGKLAPI
Sbjct: 1 MFLHLDSHSSLERTKPTVVGVDTHMELDEVHCCPGRDSGGGFIKGPMLQGLQGEGKLAPI 60
Query: 61 PKPTLPSPSRLTLFVSSSQMEDHGFPARRNGLTQASFIYQMPAGWGSPGGLFLPCQPVPT 120
PKPTLPSPSRLTLFVSSSQMEDHGFPARRNGLTQASFIYQMPAGWGSPGGLFLPCQPVPT
Sbjct: 61 PKPTLPSPSRLTLFVSSSQMEDHGFPARRNGLTQASFIYQMPAGWGSPGGLFLPCQPVPT 120
Query: 121 PVVLKPPLPPCPISWGESGPAVDGIRRTPAP 151
PVVLKPPLPPCPISWGESGPAVDGIRRTPAP
Sbjct: 121 PVVLKPPLPPCPISWGESGPAVDGIRRTPAP 151
>gi|28872814 semaphorin 4G [Homo sapiens]
Length = 843
Score = 39.7 bits (91), Expect = 0.001
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 33 CPGR-----DSGGGFIKGPMLQGLQGEGKLAPIPKPTLPSPSRLTLFVSSSQMEDHGFPA 87
CPG D G G ++G LQ + GEG AP P P P P+ LT + + P+
Sbjct: 739 CPGEEDEGDDEGAGGLEGSCLQIIPGEGAPAPPPPPPPPPPAELTNGLVA-------LPS 791
Query: 88 RRNGLTQASFIYQMPAGWGSPGGLFLPC 115
R + S++ + G P G PC
Sbjct: 792 RLRRMNGNSYVLLRQSNNGVPAG---PC 816
>gi|70608170 H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 35.8 bits (81), Expect = 0.014
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 76 SSSQMEDHGFPARRNGLTQASFIYQMPAGWGSPGGLFLPCQPVPTPVVLK--PPLP-PC- 131
S + E G+PAR+ L+ +S + GW +P F P Q P K PP+P PC
Sbjct: 31 SEAPREPVGWPARKRSLSVSSEEEEPDDGWKAP-ACFCPDQHGPKEQGPKHHPPIPFPCL 89
Query: 132 --PISWGESGPAVDGIRRTP 149
P G SGP G+ RTP
Sbjct: 90 GTPKGSGGSGPG--GLERTP 107
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 32.3 bits (72), Expect = 0.16
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 113 LPCQPVPTPVV----LKPPLPPCPISWGESGPA 141
LP Q VPTP+ ++PP+PPCP ES A
Sbjct: 962 LPAQGVPTPLAPSPAMQPPVPPCPGPGLESSAA 994
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 32.3 bits (72), Expect = 0.16
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 113 LPCQPVPTPVV----LKPPLPPCPISWGESGPA 141
LP Q VPTP+ ++PP+PPCP ES A
Sbjct: 1044 LPAQGVPTPLAPSPAMQPPVPPCPGPGLESSAA 1076
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 32.3 bits (72), Expect = 0.16
Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 15/108 (13%)
Query: 38 SGGGFIKGPMLQGLQ------GEGKLAPIPKPTLPSPSR------LTLFVSSSQMEDHGF 85
SG F++ P+L Q G+ ++P+P P LP +T F S S
Sbjct: 1048 SGPAFVQ-PLLSAGQAPLLAPGQVGVSPVPSPQLPPACAAPGGPVITAFYSGSPAPTSSA 1106
Query: 86 PARRNGLTQASFIYQMPAGWGSPGGLFLPCQPVPTPVVLKP-PLPPCP 132
P + S +Y + P LP P P P P P P P
Sbjct: 1107 PLAQPSQAPPSLVYTVATSTTPPAATILPKGP-PAPATATPAPTSPFP 1153
>gi|239747320 PREDICTED: forkhead box protein O6 [Homo sapiens]
Length = 589
Score = 31.6 bits (70), Expect = 0.27
Identities = 33/119 (27%), Positives = 43/119 (36%), Gaps = 26/119 (21%)
Query: 40 GGFIKGPMLQGLQGEGKL-----APIPKPTLPSPSRLTLFVSSSQMEDHGF-----PA-R 88
G F K P +GL+G + AP P P L +P L L +++ G PA
Sbjct: 409 GDFEKAPTARGLEGRQVVPPPPPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPS 468
Query: 89 RNGLTQASFIYQMP---------------AGWGSPGGLFLPCQPVPTPVVLKPPLPPCP 132
R+ L + +P A G PGGL L P P PL P
Sbjct: 469 RSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAP 527
>gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2
[Homo sapiens]
Length = 585
Score = 31.6 bits (70), Expect = 0.27
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 101 MPAGWGSPGGLFLPCQPVPTPVVLKPPLPPCPISWGESGPAVDG 144
+P G G+ G L +P +PVP PL P SW SGP G
Sbjct: 35 LPPGGGTRGSL-VPTRPVPPSPA---PLGTSPYSWSRSGPGRGG 74
>gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1
[Homo sapiens]
Length = 851
Score = 31.6 bits (70), Expect = 0.27
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 101 MPAGWGSPGGLFLPCQPVPTPVVLKPPLPPCPISWGESGPAVDG 144
+P G G+ G L +P +PVP PL P SW SGP G
Sbjct: 35 LPPGGGTRGSL-VPTRPVPPSPA---PLGTSPYSWSRSGPGRGG 74
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 31.2 bits (69), Expect = 0.35
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 57 LAPIPKPTLPSPSRLTL-------FVSSSQMEDHGFPARRNGLTQASFIYQMPAGWGSPG 109
L P P+P P+ S++ L FV + + P + + P W P
Sbjct: 2177 LGPAPEPPKPATSKIILVNKLGQVFVKMAGEGEPVPPPVKQPPLPPTISPTAPTSWTLPP 2236
Query: 110 GLFLPCQPVPTPVVLKPPLPPCPISWG-ESGPA 141
G L PV V PP PP P++ SGPA
Sbjct: 2237 GPLLGVLPVVGVVRPAPPPPPPPLTLVLSSGPA 2269
Score = 30.8 bits (68), Expect = 0.46
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 53 GEGKLAPIPKPTLPSPSRLTLFVSSSQMEDHGFPARRNGLTQASFIYQMPAGWGSPGGLF 112
G P+P P SPS LT + + D P RR+ P+ W SP
Sbjct: 1878 GGVSFGPLPSPG--SPSSLTHHIPTVGDPDFPAPPRRSRRPSPLAPRPPPSRWASPPLKT 1935
Query: 113 LPCQPVPTPVVLKPPLPPCPISWGESGPA 141
P VP P + L P GPA
Sbjct: 1936 SPQLRVPPPTSVVTALTPTSGELAPPGPA 1964
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 31.2 bits (69), Expect = 0.35
Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 44 KGPMLQGLQGEGKLAPIPKPT-LPSPSRLTLFVSSSQMEDHGFPARRNGLTQASFIYQMP 102
+ PM L G+ L+ P P LPSP+ L S + H G Q S M
Sbjct: 1153 QSPMGMNLPGQQPLSHEPPPAMLPSPTPL-----GSNIPLHPNAQGTGGPPQNS----MM 1203
Query: 103 AGWGSPGGLFLPCQPVPTPVVLKPPLPP---------CPISWGESGPAV 142
G P L PC PVP+ + P PP P G GP +
Sbjct: 1204 MAPGGPDSLNAPCGPVPSSSQMM-PFPPRLQQPHGAMAPTGGGGGGPGL 1251
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 31.2 bits (69), Expect = 0.35
Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 21/125 (16%)
Query: 35 GRDSGGGFIKGPMLQGL-QGEGKLAPIPKPTLPS----------PSRL------TLFVSS 77
GR G +K ++G Q G L P P PT P+ PS T+ + +
Sbjct: 1103 GRGRKGPLVKQTKVEGEPQKGGGLPPAPSPTSPASPQPPPAVAAPSEKNSIPIPTIIIKA 1162
Query: 78 SQMEDHGFPARRNGLTQASFIYQMPAGWGSPGGLFLPCQPVPTPVVLKPPLP-PCPISWG 136
G ++ + P G G GG P +PV PP P P P
Sbjct: 1163 PSTSSSGRSSQGSSTEAEPPTQPEPTGGGGGGGSSPSPAPAMSPV---PPSPSPVPTPAS 1219
Query: 137 ESGPA 141
SGPA
Sbjct: 1220 PSGPA 1224
Score = 29.3 bits (64), Expect = 1.3
Identities = 41/158 (25%), Positives = 57/158 (36%), Gaps = 23/158 (14%)
Query: 5 LDSHSSLERTKPTVVGVDTHMELDEV---HCCPGRDSGGGFIKGPML----------QGL 51
+DS SS + T+ T L G +G G GP L Q
Sbjct: 1678 VDSRSSSDHPLETISSASTLSSLSAEGGGSAGGGGGAGAGVASGPELLDTYVAYLDGQAF 1737
Query: 52 QGEGKLAPIPKPTLPSPSRLT--LFVSSSQMEDHGFPARRNGLTQASFIYQMPAGWGSPG 109
G P P L +PS+L +S + R+ +T S + G G+ G
Sbjct: 1738 GGSSTPGPPYPPQLMTPSKLRGRALGASGGLRPGPSGGLRDPVTPTSPTVSV-TGAGTDG 1796
Query: 110 GLFL-PCQPVPT------PVVLKPPLPPCPISWGESGP 140
L L C PT PV ++P +PP P+ S P
Sbjct: 1797 LLALRACSGPPTAGVAGGPVAVEPEVPPVPLPTASSLP 1834
>gi|4506049 hematopoietically expressed homeobox [Homo sapiens]
Length = 270
Score = 30.8 bits (68), Expect = 0.46
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 48 LQGLQGEGKLAPIPKPTLPSP-SRLTLFVSSSQMEDHGFPARRNGLTQASFIYQMPAGWG 106
++ + G G AP P PTLPSP S T VS + + P + + A +G
Sbjct: 34 IEDILGRGPAAPTPAPTLPSPNSSFTSLVSPYRTPVYE-PTPIHPAFSHHSAAALAAAYG 92
Query: 107 SPGGLFLPCQPVPTPV 122
PGG P P P V
Sbjct: 93 -PGGFGGPLYPFPRTV 107
>gi|169210554 PREDICTED: FLJ44904 protein [Homo sapiens]
Length = 196
Score = 30.8 bits (68), Expect = 0.46
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 61 PKPTLPSPSRLTLFVSSSQMEDHGFPARRNGLTQASFIYQMPAGWGSPGGLFLPCQPVPT 120
P+ + PSP T + Q P RR + W + L LPCQ VP
Sbjct: 88 PQHSSPSPRHTTRPAAPRQALPGVHPLRRQ--VGEETCWGGAQAWAARPFLSLPCQAVPA 145
Query: 121 PVVLKPPLPPCP 132
P L P PP P
Sbjct: 146 P-TLTPTTPPDP 156
>gi|13699803 WAS protein family, member 3 [Homo sapiens]
Length = 502
Score = 30.8 bits (68), Expect = 0.46
Identities = 36/119 (30%), Positives = 45/119 (37%), Gaps = 22/119 (18%)
Query: 41 GFIKGPMLQGLQGEGKLAPIPKPTLPSPSRLTLFVSSSQME-DHGFPARRNGLTQASFIY 99
G + +++ G P P P +PS T FVS QM FPA AS +
Sbjct: 328 GMLPAQIIEYYNPSGPPPPPPPPVIPSAQ--TAFVSPLQMPMQPPFPA------SASSTH 379
Query: 100 QMPAGWGSPGGLFLPCQPVPTPVVLKPPLPPCPISWGES--------GPAVDGIRRTPA 150
P S GL + P P P PP PP P G S P + R+ PA
Sbjct: 380 AAPPHPPST-GLLVTAPPPPGP----PPPPPGPPGPGSSLSSSPMHGPPVAEAKRQEPA 433
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 30.4 bits (67), Expect = 0.60
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 43 IKGPMLQGLQ---GEGKLAPIPKPTLPSPSRLTLFVSSSQMEDHGFPARRNGLTQASFIY 99
+ GPM GL G P + PS S+ L +S Q H FPA TQ+SF
Sbjct: 3121 VLGPMGGGLTLTTGLNPSLPTSQSLFPSASKGLLPMSHHQ-HLHSFPAA----TQSSF-- 3173
Query: 100 QMPAGWGSPGGLFLPCQPVPTPVVL 124
P P GL + QP P P +L
Sbjct: 3174 -PPNISNPPSGLLIGVQPPPDPQLL 3197
>gi|169212085 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 516
Score = 30.4 bits (67), Expect = 0.60
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 11/42 (26%)
Query: 16 PTVVGV--DTHMELDEVHCCP---------GRDSGGGFIKGP 46
P V+GV D ++ + +VHCCP G+DSGG GP
Sbjct: 33 PEVIGVFSDINLLMPQVHCCPSSVSLKPRGGQDSGGPNGAGP 74
>gi|17511435 roundabout homolog 4, magic roundabout [Homo sapiens]
Length = 1007
Score = 30.4 bits (67), Expect = 0.60
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 61 PKPTLPSPSRLTLFVSSSQMEDHGFPARRNGLTQASFIYQMPAGWGSPGGLFLPCQPVPT 120
PK S +T + + + H P ++ TQ P +P + LP P+P
Sbjct: 700 PKLLSSSNELVTRHLPPAPLFPHETPPTQSQQTQP------PVAPQAPSSILLPAAPIP- 752
Query: 121 PVVLKPPLPPCPISWGESGPA 141
+L P PP P + SGP+
Sbjct: 753 --ILSPCSPPSPQASSLSGPS 771
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 30.4 bits (67), Expect = 0.60
Identities = 35/131 (26%), Positives = 46/131 (35%), Gaps = 38/131 (29%)
Query: 48 LQGLQGEGKLAPIPKPTLPSPSRLTLFVSSSQMEDHG--FPARRNGLTQASFIYQMPAGW 105
L LQG + P P P+ +RL ED +PA ++P G
Sbjct: 261 LDALQGPPRTGG-PSPAGPAAARLA--------EDPAPHYPAGAPAPGPHPAAGEVPPGP 311
Query: 106 GSPGGLFLPCQPVPTPVVLKP-------------------------PLPPCPISWGESGP 140
G P + P P P V+ KP P PPCP +G
Sbjct: 312 GGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCP--GPIAGQ 369
Query: 141 AVDGIRRTPAP 151
A+ G R +PAP
Sbjct: 370 ALGGSRASPAP 380
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 30.0 bits (66), Expect = 0.78
Identities = 30/109 (27%), Positives = 38/109 (34%), Gaps = 16/109 (14%)
Query: 59 PIPKPTLPSPSRLTLFVSSSQMEDHGFP----------------ARRNGLTQASFIYQMP 102
P+P P SPS VS + E P ARR + S + P
Sbjct: 721 PLPPPPPMSPSWSERSVSPLRPETEARPPSRQLQALLARNIINAARRKSASPRSAGAENP 780
Query: 103 AGWGSPGGLFLPCQPVPTPVVLKPPLPPCPISWGESGPAVDGIRRTPAP 151
+ P P P P P ++ P P P S G A I R+P P
Sbjct: 781 RPFSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPGAAFAPIPRSPLP 829
>gi|239756593 PREDICTED: UPF0607 protein ENSP00000381418-like [Homo
sapiens]
Length = 415
Score = 29.6 bits (65), Expect = 1.0
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 107 SPGGLFLPC-QPVPTPVVLKPPLPPCPISWGESG 139
SP G LP +P P P VL P+P C + W E G
Sbjct: 243 SPAGGILPFGKPDPLPTVLPAPVPGCSL-WPEKG 275
>gi|239751148 PREDICTED: hypothetical protein XP_002347729 [Homo
sapiens]
Length = 72
Score = 29.6 bits (65), Expect = 1.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 119 PTPVVLKPPLPPCPISWG 136
P P PP PP P+SWG
Sbjct: 20 PPPAPASPPPPPAPLSWG 37
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 29.6 bits (65), Expect = 1.0
Identities = 37/128 (28%), Positives = 45/128 (35%), Gaps = 29/128 (22%)
Query: 30 VHCCPGRDSGGGFIKGPMLQGLQGEGKLAPIPKPTLPSPSRLTLFVSSSQMEDHGFPARR 89
+H PGRD+ + G P P+P LP P L L + + Q ARR
Sbjct: 137 LHGRPGRDARPWRLLSACPSG-------RPRPRP-LPLPLMLMLMLPTLQPLPPPGSARR 188
Query: 90 --------NGLTQASFIYQMPAGWGSPGGLFLPCQPVPTPVVLKPPLPPCPISWGESGPA 141
G A M AG G P P P PP P CP GP
Sbjct: 189 PRRGRAGRGGAAPAPPTGSMRAGPG-------PSSPSAAPTSHPPPSPACP------GPE 235
Query: 142 VDGIRRTP 149
++ I R P
Sbjct: 236 METILRNP 243
>gi|113426153 PREDICTED: UPF0607 protein ENSP00000381418-like [Homo
sapiens]
Length = 415
Score = 29.6 bits (65), Expect = 1.0
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 107 SPGGLFLPC-QPVPTPVVLKPPLPPCPISWGESG 139
SP G LP +P P P VL P+P C + W E G
Sbjct: 243 SPAGGILPFGKPDPLPTVLPAPVPGCSL-WPEKG 275
>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
sapiens]
Length = 261
Score = 29.6 bits (65), Expect = 1.0
Identities = 37/128 (28%), Positives = 45/128 (35%), Gaps = 29/128 (22%)
Query: 30 VHCCPGRDSGGGFIKGPMLQGLQGEGKLAPIPKPTLPSPSRLTLFVSSSQMEDHGFPARR 89
+H PGRD+ + G P P+P LP P L L + + Q ARR
Sbjct: 137 LHGRPGRDARPWRLLSACPSG-------RPRPRP-LPLPLMLMLMLPTLQPLPPPGSARR 188
Query: 90 --------NGLTQASFIYQMPAGWGSPGGLFLPCQPVPTPVVLKPPLPPCPISWGESGPA 141
G A M AG G P P P PP P CP GP
Sbjct: 189 PRRGRAGRGGAAPAPPTGSMRAGPG-------PSSPSAAPTSHPPPSPACP------GPE 235
Query: 142 VDGIRRTP 149
++ I R P
Sbjct: 236 METILRNP 243
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 29.6 bits (65), Expect = 1.0
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 58 APIPKPTL--PSPSRLTLFVSSSQMEDHGFPARRNGLTQASFIYQMPAGWGSPGGLFLPC 115
AP P+P + P P V Q PA R A W G+FL
Sbjct: 511 APPPRPAVEQPPPKVYVTRVRPGQRASPRAPAPR-------------APWPPFPGVFLHP 557
Query: 116 QPVPTPVVLKPPLPPCPISWGESGP 140
+P+P + PP PP P GP
Sbjct: 558 RPLPRVQLRAPPRPPRPHGRRTGGP 582
>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
Length = 774
Score = 29.6 bits (65), Expect = 1.0
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 57 LAPIPKPTLPSPSRLTLFVSSSQMEDHGFPARRNGLTQASFIYQMPAGWGS--PGGLFLP 114
L P+P P +L +S Q G ++ G T + W P GL P
Sbjct: 293 LPPLPVPQWHHAHQLKALAASKQ----GSATKQQGPTPS---------WSGLPPPGLSPP 339
Query: 115 CQPVPTPVVLKPPLPPCP 132
+PVP+P PLPP P
Sbjct: 340 YRPVPSPHPPPLPLPPPP 357
>gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens]
Length = 1337
Score = 29.6 bits (65), Expect = 1.0
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 107 SPGGLFLPCQP--VPTPVVLKP----PLPPCPI 133
SP FLP +P VP P + P PLPPCPI
Sbjct: 66 SPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPI 98
>gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens]
Length = 1374
Score = 29.6 bits (65), Expect = 1.0
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 107 SPGGLFLPCQP--VPTPVVLKP----PLPPCPI 133
SP FLP +P VP P + P PLPPCPI
Sbjct: 66 SPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPI 98
>gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo
sapiens]
Length = 561
Score = 29.6 bits (65), Expect = 1.0
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
Query: 89 RNGLTQASFIYQMPAGWG-----SPGGLFLPCQPVPTP---------VVLKPPLPPCPIS 134
+ G+ A+ + +PAG SP P P P P V+ PP PCP S
Sbjct: 54 QQGIVPANRVKLLPAGPAPKPSLSPASPAQPGSPYPAPDHSNEDQEVYVVPPPARPCPTS 113
Query: 135 WGESGP 140
+GP
Sbjct: 114 GPPAGP 119
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.140 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,266,204
Number of Sequences: 37866
Number of extensions: 526300
Number of successful extensions: 2812
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 2541
Number of HSP's gapped (non-prelim): 400
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.