Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290663 Sequence: fasta or formatted (72aa) NCBI GI: 239751148
Description:

PREDICTED: hypothetical protein XP_002347729

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.1         13           3
 C cysteine            1.4          1           1
 D aspartate           0.0          0           0
 E glutamate           2.8          2           1
 F phenylalanine       2.8          2           1
 G glycine             5.6          4           1
 H histidine           0.0          0           0
 I isoleucine          2.8          2           1
 K lysine              0.0          0           0
 L leucine             8.3          6           1
 M methionine          4.2          3           1
 N asparagine          0.0          0           0
 P proline            22.2         16           5
 Q glutamine           0.0          0           0
 R arginine            9.7          7           2
 S serine              4.2          3           1
 T threonine           8.3          6           2
 V valine              6.9          5           3
 W tryptophan          2.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347729 
SAMD1                 0.142   sterile alpha motif domain containing 1 
SEZ6L2                0.118   seizure related 6 homolog (mouse)-like 2 isoform 4 ...
SEZ6L2                0.118   seizure related 6 homolog (mouse)-like 2 isoform 2 ...
TAF4                  0.110   TBP-associated factor 4 
USP51                 0.110   ubiquitin specific protease 51 
HOXD8                 0.094   homeobox D8 
KIAA1949              0.094   phostensin 
KIAA1949              0.094   phostensin 
KDM6B                 0.094   lysine (K)-specific demethylase 6B 
DGKD                  0.094   diacylglycerol kinase, delta 130kDa isoform 2 
FOXK1                 0.094   forkhead box K1 
DIAPH1                0.094   diaphanous 1 isoform 2 
DIAPH1                0.094   diaphanous 1 isoform 1 
BAT3                  0.094   HLA-B associated transcript-3 isoform b 
BAT3                  0.094   HLA-B associated transcript-3 isoform b 
BAT3                  0.094   HLA-B associated transcript-3 isoform b 
BAT3                  0.094   HLA-B associated transcript-3 isoform a 
SFRS15                0.094   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.094   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.094   splicing factor, arginine/serine-rich 15 isoform 1 [...
MAP3K4                0.094   mitogen-activated protein kinase kinase kinase 4 iso...
MAP3K4                0.094   mitogen-activated protein kinase kinase kinase 4 iso...
RANBP9                0.087   RAN binding protein 9 
LOC645529             0.087   PREDICTED: similar to Putative acrosin-like proteas...
STK39                 0.087   serine threonine kinase 39 (STE20/SPS1 homolog, yea...
SHANK3                0.087   SH3 and multiple ankyrin repeat domains 3 
INHBB                 0.087   inhibin beta B subunit preproprotein 
PRR12                 0.087   proline rich 12 
TRRAP                 0.079   transformation/transcription domain-associated protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press