Guide to the Human Genome
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Name: HHEX Sequence: fasta or formatted (270aa) NCBI GI: 4506049
Description:

hematopoietically expressed homeobox

Referenced in:

Homeobox and Related Proteins
Hematopoiesis and Erythrocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         21           3
 C cysteine            0.7          2           1
 D aspartate           4.8         13           1
 E glutamate           6.7         18           2
 F phenylalanine       3.7         10           1
 G glycine             5.9         16           2
 H histidine           3.0          8           2
 I isoleucine          2.2          6           1
 K lysine              5.6         15           2
 L leucine             9.6         26           2
 M methionine          0.7          2           1
 N asparagine          3.0          8           1
 P proline            12.6         34           2
 Q glutamine           6.3         17           1
 R arginine            5.6         15           2
 S serine              9.6         26           2
 T threonine           4.4         12           1
 V valine              3.0          8           1
 W tryptophan          1.1          3           1
 Y tyrosine            3.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hematopoietically expressed homeobox 
TLX2                  0.121   T-cell leukemia homeobox 2 
HLX                   0.115   H2.0-like homeobox 
TLX3                  0.114   T-cell leukemia homeobox 3 
NKX6-1                0.106   NK6 transcription factor related, locus 1 
BSX                   0.104   brain specific homeobox 
NKX3-1                0.102   NK3 homeobox 1 
EMX1                  0.101   empty spiracles homolog 1 
PDX1                  0.097   pancreatic and duodenal homeobox 1 
TLX1                  0.095   T-cell leukemia homeobox 1 
GBX1                  0.095   gastrulation brain homeo box 1 
GBX2                  0.093   gastrulation brain homeo box 2 
NKX6-2                0.091   NK6 transcription factor related, locus 2 
NKX3-2                0.089   NK3 homeobox 2 
HOXC8                 0.088   homeobox C8 
BARX1                 0.088   BarH-like homeobox 1 
HOXB4                 0.088   homeobox B4 
CDX2                  0.086   caudal type homeobox 2 
HMX2                  0.084   H6 family homeobox 2 
NKX2-8                0.084   NK2 homeobox 8 
BARX2                 0.084   BarH-like homeobox 2 
HOXA4                 0.084   homeobox A4 
DBX2                  0.084   developing brain homeobox 2 
HOXA2                 0.082   homeobox A2 
NKX2-5                0.082   NK2 transcription factor related, locus 5 
LBX1                  0.082   ladybird homeobox 1 
NKX2-6                0.082   NK2 transcription factor related, locus 6 
NKX2-3                0.080   NK2 transcription factor related, locus 3 
EMX2                  0.080   empty spiracles homeobox 2 
MNX1                  0.080   homeo box HB9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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