Guide to the Human Genome
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Name: LOC100287224 Sequence: fasta or formatted (261aa) NCBI GI: 239745372
Description:

PREDICTED: hypothetical protein XP_002343483

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.9         39           2
 C cysteine            1.9          5           1
 D aspartate           3.8         10           2
 E glutamate           5.4         14           2
 F phenylalanine       0.4          1           1
 G glycine            13.0         34           2
 H histidine           3.4          9           1
 I isoleucine          0.8          2           1
 K lysine              1.5          4           1
 L leucine             7.3         19           2
 M methionine          2.3          6           1
 N asparagine          1.5          4           1
 P proline            15.3         40           3
 Q glutamine           4.6         12           2
 R arginine           11.5         30           2
 S serine              5.4         14           2
 T threonine           2.3          6           1
 V valine              3.8         10           1
 W tryptophan          0.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343483 
LOC100291220          1.000   PREDICTED: hypothetical protein XP_002347633 
WAS                   0.056   Wiskott-Aldrich syndrome protein 
TAF4                  0.056   TBP-associated factor 4 
LOC100128440          0.056   PREDICTED: hypothetical protein 
LOC100128440          0.056   PREDICTED: hypothetical protein 
LOC100128440          0.056   PREDICTED: hypothetical protein 
SAMD1                 0.054   sterile alpha motif domain containing 1 
SCAF1                 0.054   SR-related CTD-associated factor 1 
PRR12                 0.054   proline rich 12 
FGD1                  0.052   faciogenital dysplasia protein 
LOC645602             0.048   PREDICTED: hypothetical protein 
LOC645602             0.048   PREDICTED: hypothetical protein 
LOC645602             0.048   PREDICTED: hypothetical protein 
SNAPC4                0.046   small nuclear RNA activating complex, polypeptide 4,...
LOC646509             0.046   PREDICTED: hypothetical protein 
MEX3D                 0.046   ring finger and KH domain containing 1 
AHDC1                 0.046   AT hook, DNA binding motif, containing 1 
GGN                   0.044   gametogenetin 
ZC3H18                0.042   zinc finger CCCH-type containing 18 
COL5A1                0.042   alpha 1 type V collagen preproprotein 
MAP3K11               0.042   mitogen-activated protein kinase kinase kinase 11 [Ho...
ZIC5                  0.042   zinc finger protein of the cerebellum 5 
VWCE                  0.042   von Willebrand factor C and EGF domains 
FMN1                  0.040   formin 1 
COL2A1                0.040   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.040   collagen, type II, alpha 1 isoform 2 precursor [Hom...
FLJ22184              0.040   PREDICTED: hypothetical protein LOC80164 
LOC100131102          0.038   PREDICTED: hypothetical protein 
LOC100289581          0.038   PREDICTED: hypothetical protein XP_002343082 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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