Guide to the Human Genome
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Name: ROBO4 Sequence: fasta or formatted (1007aa) NCBI GI: 17511435
Description:

roundabout homolog 4, magic roundabout

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         90           2
 C cysteine            1.8         18           1
 D aspartate           4.0         40           1
 E glutamate           5.3         53           2
 F phenylalanine       1.5         15           1
 G glycine             8.2         83           3
 H histidine           2.3         23           2
 I isoleucine          2.0         20           2
 K lysine              1.8         18           3
 L leucine            11.9        120           5
 M methionine          1.6         16           1
 N asparagine          1.9         19           1
 P proline            11.6        117           3
 Q glutamine           4.9         49           2
 R arginine            6.5         65           4
 S serine             12.0        121           5
 T threonine           4.8         48           2
 V valine              5.5         55           2
 W tryptophan          2.4         24           2
 Y tyrosine            1.3         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   roundabout homolog 4, magic roundabout 
ROBO1                 0.085   roundabout 1 isoform c 
ROBO1                 0.082   roundabout 1 isoform b 
ROBO1                 0.082   roundabout 1 isoform a 
LOC642132             0.082   PREDICTED: similar to roundabout 1 isoform 2 
ROBO1                 0.082   roundabout 1 isoform d 
ROBO3                 0.077   roundabout, axon guidance receptor, homolog 3 
LOC642132             0.074   PREDICTED: similar to roundabout 1 isoform 1 
ROBO2                 0.065   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.065   roundabout, axon guidance receptor, homolog 2 isofor...
PTPRF                 0.044   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.044   protein tyrosine phosphatase, receptor type, F isof...
PXDN                  0.038   peroxidasin 
SDK1                  0.037   sidekick 1 
PTPRS                 0.037   protein tyrosine phosphatase, receptor type, sigma ...
PXDNL                 0.036   peroxidasin homolog-like 
PTPRS                 0.036   protein tyrosine phosphatase, receptor type, sigma ...
HMCN2                 0.035   PREDICTED: hemicentin 2 
HMCN2                 0.035   PREDICTED: hemicentin 2 
PTPRS                 0.035   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.035   protein tyrosine phosphatase, receptor type, sigma ...
NFASC                 0.035   neurofascin isoform 3 precursor 
NFASC                 0.035   neurofascin isoform 2 precursor 
NFASC                 0.035   neurofascin isoform 4 precursor 
NFASC                 0.035   neurofascin isoform 6 precursor 
NFASC                 0.035   neurofascin isoform 5 precursor 
NFASC                 0.035   neurofascin isoform 1 precursor 
CNTN5                 0.034   contactin 5 isoform long 
CNTN5                 0.034   contactin 5 isoform short 
HMCN2                 0.034   PREDICTED: hemicentin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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