Guide to the Human Genome
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Name: IRX5 Sequence: fasta or formatted (483aa) NCBI GI: 139394646
Description:

iroquois homeobox protein 5

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         57           7
 C cysteine            1.2          6           1
 D aspartate           4.6         22           1
 E glutamate           5.6         27           5
 F phenylalanine       1.9          9           1
 G glycine            11.4         55           4
 H histidine           2.3         11           1
 I isoleucine          1.9          9           2
 K lysine              5.0         24           2
 L leucine             6.6         32           1
 M methionine          1.4          7           1
 N asparagine          2.9         14           1
 P proline            14.7         71           7
 Q glutamine           2.7         13           1
 R arginine            3.9         19           3
 S serine              9.5         46           3
 T threonine           5.2         25           2
 V valine              1.9          9           1
 W tryptophan          0.8          4           1
 Y tyrosine            4.8         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   iroquois homeobox protein 5 
IRX2                  0.349   iroquois homeobox 2 
IRX2                  0.349   iroquois homeobox 2 
IRX3                  0.198   iroquois homeobox 3 
IRX4                  0.180   iroquois homeobox 4 
IRX1                  0.166   iroquois homeobox protein 1 
IRX6                  0.152   iroquois homeobox protein 6 
MKX                   0.056   mohawk homeobox 
OGFR                  0.050   opioid growth factor receptor 
PRB2                  0.049   proline-rich protein BstNI subfamily 2 
COL3A1                0.044   collagen type III alpha 1 preproprotein 
ENAH                  0.043   enabled homolog isoform a 
ENAH                  0.043   enabled homolog isoform b 
PRB1                  0.043   proline-rich protein BstNI subfamily 1 isoform 1 pre...
NACA                  0.043   nascent polypeptide-associated complex alpha subuni...
COL18A1               0.042   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.042   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.042   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
PRB3                  0.040   proline-rich protein BstNI subfamily 3 precursor [H...
ATN1                  0.040   atrophin-1 
ATN1                  0.040   atrophin-1 
COL1A1                0.039   alpha 1 type I collagen preproprotein 
PRB1                  0.039   proline-rich protein BstNI subfamily 1 isoform 2 pre...
COL2A1                0.038   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.038   collagen, type II, alpha 1 isoform 2 precursor [Hom...
TAF4                  0.038   TBP-associated factor 4 
COL5A3                0.037   collagen, type V, alpha 3 preproprotein 
WDR33                 0.037   WD repeat domain 33 isoform 1 
COL4A4                0.035   alpha 4 type IV collagen precursor 
ZIC5                  0.034   zinc finger protein of the cerebellum 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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