Guide to the Human Genome
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Name: LOC729159 Sequence: fasta or formatted (415aa) NCBI GI: 113426153
Description:

PREDICTED: UPF0607 protein ENSP00000381418-like

Not currently referenced in the text

Other entries for this name:
alt prot {415aa} PREDICTED: UPF0607 protein ENSP00000381418-like
alt prot {415aa} PREDICTED: UPF0607 protein ENSP00000381418-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         29           2
 C cysteine            1.4          6           1
 D aspartate           2.9         12           1
 E glutamate           4.8         20           2
 F phenylalanine       2.9         12           1
 G glycine             8.2         34           2
 H histidine           2.9         12           1
 I isoleucine          1.0          4           1
 K lysine              5.1         21           2
 L leucine            11.1         46           2
 M methionine          1.9          8           1
 N asparagine          3.4         14           2
 P proline            12.5         52           3
 Q glutamine           4.8         20           2
 R arginine           10.8         45           3
 S serine              8.7         36           2
 T threonine           3.6         15           1
 V valine              4.6         19           2
 W tryptophan          1.9          8           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho... 
LOC729159             0.990   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC729159             0.986   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100132229          0.740   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC100132229          0.739   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC100132229          0.737   PREDICTED: hypothetical protein 
LOC100129307          0.736   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.734   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.733   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100128610          0.703   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100131107          0.703   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.703   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.703   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100128610          0.699   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100128610          0.698   PREDICTED: similar to Putative UPF0607 protein ENSP...
C15orf2               0.252   hypothetical protein LOC23742 
LOC729537             0.251   PREDICTED: hypothetical protein 
LOC729537             0.247   PREDICTED: hypothetical protein 
LOC100292653          0.041   PREDICTED: similar to hCG1998564 
POM121                0.029   nuclear pore membrane protein 121 
POM121C               0.027   POM121 membrane glycoprotein (rat)-like 
ASXL1                 0.019   additional sex combs like 1 
ROBO3                 0.017   roundabout, axon guidance receptor, homolog 3 
LOC729915             0.017   PREDICTED: similar to Putative POM121-like protein ...
C10orf12              0.017   hypothetical protein LOC26148 
BPTF                  0.016   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.016   bromodomain PHD finger transcription factor isoform ...
PPP1R1C               0.016   protein phosphatase 1, regulatory (inhibitor) subun...
NHSL1                 0.014   NHS-like 1 
LOC100294020          0.014   PREDICTED: similar to POM121-like 1, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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