Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 22547108
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22547108 tumor necrosis factor receptor superfamily, member
10d precursor [Homo sapiens]
(386 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22547108 tumor necrosis factor receptor superfamily, member 1... 778 0.0
gi|224494019 tumor necrosis factor receptor superfamily, member ... 313 2e-85
gi|224494026 tumor necrosis factor receptor superfamily, member ... 288 6e-78
gi|21361086 tumor necrosis factor receptor superfamily, member 1... 265 7e-71
gi|22547121 tumor necrosis factor receptor superfamily, member 1... 245 4e-65
gi|23510423 tumor necrosis factor receptor superfamily, member 6... 64 2e-10
gi|4507583 tumor necrosis factor receptor superfamily, member 6 ... 64 2e-10
gi|23510421 tumor necrosis factor receptor superfamily, member 6... 62 1e-09
gi|148743793 osteoprotegerin precursor [Homo sapiens] 57 3e-08
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 56 6e-08
gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi... 54 2e-07
gi|4505393 nerve growth factor receptor precursor [Homo sapiens] 54 2e-07
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 49 1e-05
gi|4507579 tumor necrosis factor receptor superfamily, member 4 ... 45 1e-04
gi|7657039 tumor necrosis factor receptor superfamily, member 21... 44 2e-04
gi|4507587 tumor necrosis factor receptor superfamily, member 7 ... 39 0.006
gi|4505039 lymphotoxin beta receptor [Homo sapiens] 39 0.008
gi|145312251 EPH receptor A6 isoform a [Homo sapiens] 39 0.008
gi|68348711 tumor necrosis factor receptor superfamily, member 8... 38 0.014
gi|239755070 PREDICTED: similar to proprotein convertase subtili... 38 0.018
gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo ... 37 0.023
gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo ... 37 0.023
gi|31377568 signal peptide, CUB domain, EGF-like 3 [Homo sapiens] 37 0.030
gi|4507565 tumor necrosis factor receptor superfamily, member 11... 37 0.039
gi|91208420 bassoon protein [Homo sapiens] 36 0.051
gi|89363020 nuclear transcription factor, X-box binding-like 1 [... 36 0.067
gi|5730095 tumor necrosis factor receptor superfamily, member 9 ... 35 0.088
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 34 0.25
gi|20336246 proprotein convertase subtilisin/kexin type 5 prepro... 34 0.25
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 33 0.43
>gi|22547108 tumor necrosis factor receptor superfamily, member 10d
precursor [Homo sapiens]
Length = 386
Score = 778 bits (2010), Expect = 0.0
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPR 60
MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPR
Sbjct: 1 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPR 60
Query: 61 QDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTV 120
QDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTV
Sbjct: 61 QDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTV 120
Query: 121 CKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKC 180
CKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKC
Sbjct: 121 CKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKC 180
Query: 181 KNESAASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYL 240
KNESAASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYL
Sbjct: 181 KNESAASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYL 240
Query: 241 KGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQEL 300
KGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQEL
Sbjct: 241 KGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQEL 300
Query: 301 AELTGVTVELPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDASATLEEGHAKE 360
AELTGVTVELPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDASATLEEGHAKE
Sbjct: 301 AELTGVTVELPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDASATLEEGHAKE 360
Query: 361 TIQDQLVGSEKLFYEEDEAGSATSCL 386
TIQDQLVGSEKLFYEEDEAGSATSCL
Sbjct: 361 TIQDQLVGSEKLFYEEDEAGSATSCL 386
>gi|224494019 tumor necrosis factor receptor superfamily, member 10b
isoform 1 precursor [Homo sapiens]
Length = 440
Score = 313 bits (801), Expect = 2e-85
Identities = 182/344 (52%), Positives = 216/344 (62%), Gaps = 18/344 (5%)
Query: 5 GQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPRQDEV 64
GQ+ P AS AR PG R A G RP PK L V+ + AVLL V +SA I +QD
Sbjct: 5 GQNAPAASGARKRHGPGPREARGARPGPRVPKTL--VLVVAAVLLLVSAESALITQQDLA 62
Query: 65 PQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSG 124
PQQ APQQ+R S E CP G H SE C C G DY+ N+L CL CT C SG
Sbjct: 63 PQQRAAPQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSG 122
Query: 125 QTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKC-KNE 183
+ S CTTTR+TVCQCE+G+F++++SPEMCR CRTGCPRGMVKV +CTP SDI+C E
Sbjct: 123 EVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHKE 182
Query: 184 SAASSTGKTPAAEETVTTILGMLASPYHYL-IIIVVLVIILAVVVVGFSCR----KKFIS 238
S +G+ PA EETVT+ G ASP III V V + ++V F C+ KK +
Sbjct: 183 SGTKHSGEVPAVEETVTSSPGTPASPCSLSGIIIGVTVAAVVLIVAVFVCKSLLWKKVLP 242
Query: 239 YLKGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQ 298
YLKGICSGGGG PERV R S+ PGAEDN NE +S LQPTQV EQE++ Q
Sbjct: 243 YLKGICSGGGGDPERVDR--------SSQRPGAEDNVLNEIVS--ILQPTQVPEQEMEVQ 292
Query: 299 ELAELTGVTVELPEEPQRLLEQAEAEGCQRRRLLVPVNDADSAD 342
E AE TGV + P E + LLE AEAE QRRRLLVP N+ D +
Sbjct: 293 EPAEPTGVNMLSPGESEHLLEPAEAERSQRRRLLVPANEGDPTE 336
>gi|224494026 tumor necrosis factor receptor superfamily, member 10b
isoform 2 precursor [Homo sapiens]
Length = 411
Score = 288 bits (737), Expect = 6e-78
Identities = 169/338 (50%), Positives = 202/338 (59%), Gaps = 35/338 (10%)
Query: 5 GQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPRQDEV 64
GQ+ P AS AR PG R A G RP PK L V+ + AVLL V +SA I +QD
Sbjct: 5 GQNAPAASGARKRHGPGPREARGARPGPRVPKTL--VLVVAAVLLLVSAESALITQQDLA 62
Query: 65 PQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSG 124
PQQ APQQ+R S E CP G H SE C C G DY+ N+L CL CT C SG
Sbjct: 63 PQQRAAPQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSG 122
Query: 125 QTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNES 184
+ S CTTTR+TVCQCE+G+F++++SPEMCR CRTGCPRGMVKV +CTP SDI+C ++
Sbjct: 123 EVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHKE 182
Query: 185 AASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGIC 244
+ G T AA +V+I+AV V KK + YLKGIC
Sbjct: 183 SGIIIGVTVAA-----------------------VVLIVAVFVCKSLLWKKVLPYLKGIC 219
Query: 245 SGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQELAELT 304
SGGGG PERV R S+ PGAEDN NE +S LQPTQV EQE++ QE AE T
Sbjct: 220 SGGGGDPERVDR--------SSQRPGAEDNVLNEIVS--ILQPTQVPEQEMEVQEPAEPT 269
Query: 305 GVTVELPEEPQRLLEQAEAEGCQRRRLLVPVNDADSAD 342
GV + P E + LLE AEAE QRRRLLVP N+ D +
Sbjct: 270 GVNMLSPGESEHLLEPAEAERSQRRRLLVPANEGDPTE 307
>gi|21361086 tumor necrosis factor receptor superfamily, member 10a
[Homo sapiens]
Length = 468
Score = 265 bits (676), Expect = 7e-71
Identities = 167/339 (49%), Positives = 199/339 (58%), Gaps = 37/339 (10%)
Query: 5 GQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSA-TIPRQDE 63
GQ P+A ARAGR PG R A P L K KFVV V VLL V SA TI D
Sbjct: 60 GQHGPSAR-ARAGRAPGPRPAREASPRLRVHKTFKFVV--VGVLLQVVPSSAATIKLHD- 115
Query: 64 VPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKS 123
Q++ QQ S E CP GSHRSE+ GACN CTEGV YT ASNNL +CL CT CKS
Sbjct: 116 ---QSIGTQQWEHSPLGELCPPGSHRSEHPGACNRCTEGVGYTNASNNLFACLPCTACKS 172
Query: 124 GQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNE 183
+ +S CTTTR+T CQC+ G+F++ NS EMCR C GCPRGMVKV +CTP SDI+C ++
Sbjct: 173 DEEERSPCTTTRNTACQCKPGTFRNDNSAEMCRKCSRGCPRGMVKVKDCTPWSDIECVHK 232
Query: 184 SAASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGI 243
+ + ++I++V LV+ L +V V C I
Sbjct: 233 ESGNGHN--------------------IWVILVVTLVVPLLLVAVLIVC--------CCI 264
Query: 244 CSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQELAEL 303
SG GG P+ + RV F R R PGAEDNA NE LSN T VSEQ+++ QE A+L
Sbjct: 265 GSGCGGDPKCMDRVCFWRLGL-LRGPGAEDNAHNEILSNADSLSTFVSEQQMESQEPADL 323
Query: 304 TGVTVELPEEPQRLLEQAEAEGCQRRRLLVPVNDADSAD 342
TGVTV+ P E Q LL AEAEG QRRRLLVP N AD +
Sbjct: 324 TGVTVQSPGEAQCLLGPAEAEGSQRRRLLVPANGADPTE 362
Score = 49.3 bits (116), Expect = 6e-06
Identities = 27/45 (60%), Positives = 29/45 (64%)
Query: 340 SADISTLLDASATLEEGHAKETIQDQLVGSEKLFYEEDEAGSATS 384
+A I TLLDA +EE HAKE IQD LV S K Y ED GSA S
Sbjct: 422 NASIHTLLDALERMEERHAKEKIQDLLVDSGKFIYLEDGTGSAVS 466
>gi|22547121 tumor necrosis factor receptor superfamily, member 10c
precursor [Homo sapiens]
Length = 259
Score = 245 bits (626), Expect = 4e-65
Identities = 121/170 (71%), Positives = 137/170 (80%), Gaps = 1/170 (0%)
Query: 35 PKILKFVVFIVAVLLPVRVDSATIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTG 94
PK LKFVV IVAVLLPV SAT RQ+EVPQQTVAPQQQR S K EECPAGSHRSE+TG
Sbjct: 5 PKTLKFVVVIVAVLLPVLAYSATTARQEEVPQQTVAPQQQRHSFKGEECPAGSHRSEHTG 64
Query: 95 ACNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEM 154
ACNPCTEGVDYT ASNN PSC CTVCKS Q +KSSCT TRDTVCQC++G+F+++NSPEM
Sbjct: 65 ACNPCTEGVDYTNASNNEPSCFPCTVCKSDQKHKSSCTMTRDTVCQCKEGTFRNENSPEM 124
Query: 155 CRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILG 204
CR C + CP G V+VSNCT DI+C E A++T +TPAAEET+ T G
Sbjct: 125 CRKC-SRCPSGEVQVSNCTSWDDIQCVEEFGANATVETPAAEETMNTSPG 173
>gi|23510423 tumor necrosis factor receptor superfamily, member 6
isoform 3 precursor [Homo sapiens]
Length = 220
Score = 63.9 bits (154), Expect = 2e-10
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 83 CPAGSHRSEYTGA------CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTT 134
CP G ++ C PC EG +YT ++ C C +C G + +CT T
Sbjct: 63 CPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRT 122
Query: 135 RDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTG 190
++T C+C+ F + E C C T C G++K CT S+ KCK E + S+ G
Sbjct: 123 QNTKCRCKPNFFCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEGSRSNLG 175
>gi|4507583 tumor necrosis factor receptor superfamily, member 6
isoform 1 precursor [Homo sapiens]
Length = 335
Score = 63.9 bits (154), Expect = 2e-10
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 83 CPAGSHRSEYTGA------CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTT 134
CP G ++ C PC EG +YT ++ C C +C G + +CT T
Sbjct: 63 CPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRT 122
Query: 135 RDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTG 190
++T C+C+ F + E C C T C G++K CT S+ KCK E + S+ G
Sbjct: 123 QNTKCRCKPNFFCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEGSRSNLG 175
>gi|23510421 tumor necrosis factor receptor superfamily, member 6
isoform 2 precursor [Homo sapiens]
Length = 314
Score = 61.6 bits (148), Expect = 1e-09
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 83 CPAGSHRSEYTGA------CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTT 134
CP G ++ C PC EG +YT ++ C C +C G + +CT T
Sbjct: 63 CPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRT 122
Query: 135 RDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKT 192
++T C+C+ F + E C C T C G++K CT S+ KCK E KT
Sbjct: 123 QNTKCRCKPNFFCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEVKRKEVQKT 177
>gi|148743793 osteoprotegerin precursor [Homo sapiens]
Length = 401
Score = 57.0 bits (136), Expect = 3e-08
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 81 EECPAGSHRSEYTGA-----CNPCTEGVDYTIASNNLPSCLLCT-VCKSGQTNKSSCTTT 134
++CP G++ ++ A C PC + YT + + CL C+ VCK Q K C T
Sbjct: 42 DKCPPGTYLKQHCTAKWKTVCAPCPDHY-YTDSWHTSDECLYCSPVCKELQYVKQECNRT 100
Query: 135 RDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCK----NESAASSTG 190
+ VC+C++G + + E C R+ CP G V TP + CK + ++
Sbjct: 101 HNRVCECKEGRYLE---IEFCLKHRS-CPPGFGVVQAGTPERNTVCKRCPDGFFSNETSS 156
Query: 191 KTPAAEETVTTILGML 206
K P + T ++ G+L
Sbjct: 157 KAPCRKHTNCSVFGLL 172
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 55.8 bits (133), Expect = 6e-08
Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 17/165 (10%)
Query: 27 GTRPWLLDPK--ILKFVVFIVAVLLPVRVDSATIPRQDEVPQQT-VAPQQQRRSLKEEEC 83
G PW PK +L+ V+++ + P + ++DE P + P+ +E C
Sbjct: 8 GPPPWRSTPKTDVLRLVLYLTFLGAPCYAPALPSCKEDEYPVGSECCPKCSPGYRVKEAC 67
Query: 84 PAGSHRSEYTGA-CNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSS--CTTTRDTVCQ 140
E TG C PC G Y N L CL C +C ++S C+ T + VC
Sbjct: 68 ------GELTGTVCEPCPPGT-YIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVCG 120
Query: 141 CEKGSF---QDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKN 182
C G F QD + CR T P V+ T D C+N
Sbjct: 121 CSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGG-TESQDTLCQN 164
>gi|4507575 tumor necrosis factor receptor 1 precursor [Homo
sapiens]
Length = 455
Score = 53.9 bits (128), Expect = 2e-07
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 82 ECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKS--GQTNKSSCTTTRDTVC 139
+CP ++ C C G +T + N+L CL C+ C+ GQ SSCT RDTVC
Sbjct: 71 DCPGPGQDTD----CRECESG-SFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVC 125
Query: 140 QCEKGSFQDKNSPEM--CRTCRTGCPRGMVKVSNCTPRSDIKC 180
C K ++ S + C C C G V +S C + + C
Sbjct: 126 GCRKNQYRHYWSENLFQCFNCSL-CLNGTVHLS-CQEKQNTVC 166
Score = 40.0 bits (92), Expect = 0.004
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 109 SNNLPSCLLCTVCKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVK 168
S NL C C++C +G T SC ++TVC C G F +N C C+ K
Sbjct: 137 SENLFQCFNCSLCLNG-TVHLSCQEKQNTVCTCHAGFFLRENECVSCSNCK--------K 187
Query: 169 VSNCTPRSDIKCKNESAASSTGKT 192
CT + +N +G T
Sbjct: 188 SLECTKLCLPQIENVKGTEDSGTT 211
>gi|4505393 nerve growth factor receptor precursor [Homo sapiens]
Length = 427
Score = 53.9 bits (128), Expect = 2e-07
Identities = 86/391 (21%), Positives = 125/391 (31%), Gaps = 110/391 (28%)
Query: 80 EEECPAG--SHRSEYTGACN-----------------PCTEGVDYTIASNNLPSCLLCTV 120
+E CP G +H E ACN PC + V ++ + C CT
Sbjct: 29 KEACPTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLDSVTFSDVVSATEPCKPCTE 88
Query: 121 CKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSP--EMCRTCRTG----------------- 161
C Q+ + C D VC+C G +QD+ + E CR C G
Sbjct: 89 CVGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEACRVCEAGSGLVFSCQDKQNTVCEE 148
Query: 162 CPRGMV---------------------KVSNCTPRSDIKCKNESAASSTGKTP--AAEET 198
CP G ++ CT +D +C+ T TP ++ T
Sbjct: 149 CPDGTYSDEANHVDPCLPCTVCEDTERQLRECTRWADAECEEIPGRWITRSTPPEGSDST 208
Query: 199 VTTILGMLASPYHYLIIIVVLVIILAVV-----VVGFSCRKKFISYLKGICSGGGGGPER 253
+ A P LI V ++ V+ VV I I + G
Sbjct: 209 APSTQEPEAPPEQDLIASTVAGVVTTVMGSSQPVVTRGTTDNLIPVYCSILAAVVVG--L 266
Query: 254 VHRVLFRR-RSCPSRVPGAEDNARNET---------------LSNRYLQPTQVSEQEIQG 297
V + F+R SC GA N+T + ++ L Q Q G
Sbjct: 267 VAYIAFKRWNSCKQNKQGANSRPVNQTPPPEGEKLHSDSGISVDSQSLHDQQPHTQTASG 326
Query: 298 QELAELTGVTVELP----EEPQRLLEQAEA----------------------EGCQRRRL 331
Q L G+ LP EE ++LL + E C R L
Sbjct: 327 QALKGDGGLYSSLPPAKREEVEKLLNGSAGDTWRHLAGELGYQPEHIDSFTHEACPVRAL 386
Query: 332 LVPVNDADSADISTLLDASATLEEGHAKETI 362
L DSA + LL A ++ E++
Sbjct: 387 LASWATQDSATLDALLAALRRIQRADLVESL 417
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 48.5 bits (114), Expect = 1e-05
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 82 ECPAGSHRSEYTG-----ACNPCTEGVDYTIASNNLPSCLLC-TVCKSGQTNKSSCTTTR 135
+C G H + C+ C + YT N +P CL C + C S Q +CT +
Sbjct: 56 KCSPGQHAKVFCTKTSDTVCDSCEDST-YTQLWNWVPECLSCGSRCSSDQVETQACTREQ 114
Query: 136 DTVCQCEKGSFQDKNSPEMCRTCR--TGCPRGMVKVSNCTPRSDIKCK 181
+ +C C G + + E CR C C G T SD+ CK
Sbjct: 115 NRICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCK 162
Score = 40.8 bits (94), Expect = 0.002
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 116 LLCTVCKSGQTNKSSCTTTRDTVC-QCEKGSF-QDKNSPEMCRTCRTGCPRGMVKVSNCT 173
+ C+ C GQ K CT T DTVC CE ++ Q N C +C + C V+ CT
Sbjct: 52 MCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACT 111
Query: 174 PRSDIKC 180
+ C
Sbjct: 112 REQNRIC 118
>gi|4507579 tumor necrosis factor receptor superfamily, member 4
precursor [Homo sapiens]
Length = 277
Score = 45.1 bits (105), Expect = 1e-04
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 89 RSEYTGACNPCTEGVDYTIASNNLPSCLLCTVC--KSGQTNKSSCTTTRDTVCQCEKGSF 146
RS+ T C PC G + S+ C CT C +SG K CT T+DTVC+C G+
Sbjct: 58 RSQNT-VCRPCGPGFYNDVVSSK--PCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGT- 113
Query: 147 QDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGK 191
Q +S + C CP G + +P + CK + + GK
Sbjct: 114 QPLDSYKPGVDC-APCPPG-----HFSPGDNQACKPWTNCTLAGK 152
Score = 36.2 bits (82), Expect = 0.051
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 118 CTVCKSGQTNKSSCTTTRDTVCQ-CEKGSFQDKNSPEMCRTCRTGC--PRGMVKVSNCTP 174
C C+ G S C+ +++TVC+ C G + D S + C+ C T C G + CT
Sbjct: 43 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPC-TWCNLRSGSERKQLCTA 101
Query: 175 RSDIKCK 181
D C+
Sbjct: 102 TQDTVCR 108
>gi|7657039 tumor necrosis factor receptor superfamily, member 21
precursor [Homo sapiens]
Length = 655
Score = 44.3 bits (103), Expect = 2e-04
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 81 EECPAGSHRSEYTG-----ACNPCTEGVDYTIASNNLPSCLLCTV-CKSGQTNKSSCTTT 134
++CPAG++ SE+ C+ C G +T N + C C+ C K C
Sbjct: 68 DKCPAGTYVSEHCTNTSLRVCSSCPVGT-FTRHENGIEKCHDCSQPCPWPMIEKLPCAAL 126
Query: 135 RDTVCQCEKGSFQDKNSPEMCRTC--RTGCPRGMVKVSNCTPRSDIKCK 181
D C C G FQ TC T CP G T D++CK
Sbjct: 127 TDRECTCPPGMFQSN------ATCAPHTVCPVGWGVRKKGTETEDVRCK 169
Score = 40.4 bits (93), Expect = 0.003
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 116 LLCTVCKSGQTNKSSCTTTRDTVCQ-CEKGSF-QDKNSPEMCRTCRTGCPRGMVKVSNCT 173
L C C +G CT T VC C G+F + +N E C C CP M++ C
Sbjct: 65 LTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCA 124
Query: 174 PRSDIKC 180
+D +C
Sbjct: 125 ALTDREC 131
>gi|4507587 tumor necrosis factor receptor superfamily, member 7
precursor [Homo sapiens]
Length = 260
Score = 39.3 bits (90), Expect = 0.006
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 96 CNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSSCTTTRDTVCQCEKG-SFQDKNSPE 153
C+PC GV ++ + P C C C SG + +CT T + C C G +DK E
Sbjct: 62 CDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVR-NCTITANAECACRNGWQCRDKECTE 119
>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
Length = 435
Score = 38.9 bits (89), Expect = 0.008
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 116 LLCTVCKSGQTNKSSCTTTRDTVC-QCEKGSFQDK-NSPEMCRTCRTGCP-RGMVKVSNC 172
+ C+ C G + C+ RDTVC C + S+ + N +C+ CR P G+ +++ C
Sbjct: 57 ICCSRCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPC 116
Query: 173 TPRSDIKCK 181
T + +C+
Sbjct: 117 TSKRKTQCR 125
Score = 38.5 bits (88), Expect = 0.010
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 83 CPAGSHRSEYTG-----ACNPCTEGVDYTIASNNLPSCLLCTVCKS--GQTNKSSCTTTR 135
CP G++ S C C E Y N L C LC C G + CT+ R
Sbjct: 62 CPPGTYVSAKCSRIRDTVCATCAEN-SYNEHWNYLTICQLCRPCDPVMGLEEIAPCTSKR 120
Query: 136 DTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNE 183
T C+C+ G F + E C C +S+C P ++ + K+E
Sbjct: 121 KTQCRCQPGMFCAAWALE-CTHCEL--------LSDCPPGTEAELKDE 159
>gi|145312251 EPH receptor A6 isoform a [Homo sapiens]
Length = 1130
Score = 38.9 bits (89), Expect = 0.008
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 83 CPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSSCTTTRDTVCQCE 142
C + E G+C+ C G A N C+ C T+ VCQCE
Sbjct: 357 CICSTGYEEIEGSCHACRPGFYKAFAGNTK-----CSKCPPHSLTYMEATS----VCQCE 407
Query: 143 KGSFQ-DKNSPEMCRTCRTGCPRGMV 167
KG F+ +K+ P M T PR +V
Sbjct: 408 KGYFRAEKDPPSMACTRPPSAPRNVV 433
>gi|68348711 tumor necrosis factor receptor superfamily, member 8
isoform 1 precursor [Homo sapiens]
Length = 595
Score = 38.1 bits (87), Expect = 0.014
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 115 CLLCTVC-KSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTC--RTGCPRGMVKVSN 171
C C C + K+ C VC+C G F ++ C C + CP GM+
Sbjct: 81 CTACVTCSRDDLVEKTPCAWNSSRVCECRPGMFCSTSAVNSCARCFFHSVCPAGMIVKFP 140
Query: 172 CTPRSDIKCKNESAASSTGKTPA 194
T + + C+ +S G +PA
Sbjct: 141 GTAQKNTVCE----PASPGVSPA 159
Score = 29.6 bits (65), Expect = 4.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 106 TIASNNLPSCLLCTVCKSGQTNKSSCTTTRDTVCQ-CEKGSFQDKNSPEMCRTCRTG 161
T A N+ C +VC +G K T ++TVC+ G SPE C+ +G
Sbjct: 116 TSAVNSCARCFFHSVCPAGMIVKFPGTAQKNTVCEPASPGVSPACASPENCKEPSSG 172
>gi|239755070 PREDICTED: similar to proprotein convertase
subtilisin/kexin type 5 [Homo sapiens]
Length = 853
Score = 37.7 bits (86), Expect = 0.018
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 81 EECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSG--QTNKSSCTTTRDTV 138
EECPAG++ + T C C + T +S+ CT C+ G + SC
Sbjct: 396 EECPAGTYYEKQTKECRDCHKSC-LTCSSSG-----TCTTCQKGLIMNPRGSCMANE--- 446
Query: 139 CQCEKGSFQDKNSPEMCRTCRTGC 162
+C + D+++P C+ C C
Sbjct: 447 -KCSPSEYWDEDAPG-CKPCHVKC 468
Score = 33.5 bits (75), Expect = 0.33
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 83 CPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCT---VCKSGQTNKSSCTTTRDTVC 139
CP G+ S +G+C CTE +C +C+ +CK Q + C
Sbjct: 208 CPQGTWPSVRSGSCENCTE------------ACAICSGADLCKKCQMQPGHPLFLHEGRC 255
Query: 140 --QCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNC 172
+C +GS+ + +C C + C +NC
Sbjct: 256 YSKCPEGSYAEDG---ICERCSSPCRTCEGNATNC 287
>gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo
sapiens]
Length = 853
Score = 37.4 bits (85), Expect = 0.023
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 81 EECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSG--QTNKSSCTTTRDTV 138
EECPAG++ + T C C + T +S+ CT C+ G + SC
Sbjct: 396 EECPAGTYYEKETKECRDCHKSC-LTCSSSG-----TCTTCQKGLIMNPRGSCMANE--- 446
Query: 139 CQCEKGSFQDKNSPEMCRTCRTGC 162
+C + D+++P C+ C C
Sbjct: 447 -KCSPSEYWDEDAPG-CKPCHVKC 468
Score = 33.5 bits (75), Expect = 0.33
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 83 CPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCT---VCKSGQTNKSSCTTTRDTVC 139
CP G+ S +G+C CTE +C +C+ +CK Q + C
Sbjct: 208 CPQGTWPSVRSGSCENCTE------------ACAICSGADLCKKCQMQPGHPLFLHEGRC 255
Query: 140 --QCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNC 172
+C +GS+ + +C C + C +NC
Sbjct: 256 YSKCPEGSYAEDG---ICERCSSPCRTCEGNATNC 287
>gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo
sapiens]
Length = 853
Score = 37.4 bits (85), Expect = 0.023
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 81 EECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSG--QTNKSSCTTTRDTV 138
EECPAG++ + T C C + T +S+ CT C+ G + SC
Sbjct: 396 EECPAGTYYEKETKECRDCHKSC-LTCSSSG-----TCTTCQKGLIMNPRGSCMANE--- 446
Query: 139 CQCEKGSFQDKNSPEMCRTCRTGC 162
+C + D+++P C+ C C
Sbjct: 447 -KCSPSEYWDEDAPG-CKPCHVKC 468
Score = 33.5 bits (75), Expect = 0.33
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 83 CPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCT---VCKSGQTNKSSCTTTRDTVC 139
CP G+ S +G+C CTE +C +C+ +CK Q + C
Sbjct: 208 CPQGTWPSVRSGSCENCTE------------ACAICSGADLCKKCQMQPGHPLFLHEGRC 255
Query: 140 --QCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNC 172
+C +GS+ + +C C + C +NC
Sbjct: 256 YSKCPEGSYAEDG---ICERCSSPCRTCEGNATNC 287
>gi|31377568 signal peptide, CUB domain, EGF-like 3 [Homo sapiens]
Length = 993
Score = 37.0 bits (84), Expect = 0.030
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 19/125 (15%)
Query: 65 PQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKS- 123
P ++ P Q R K CP G++ T C PC G + L SC LC +
Sbjct: 621 PMESCRPGQHRAGTKCVSCPQGTYYHGQTEQCVPCPAGT-FQEREGQL-SCDLCPGSDAH 678
Query: 124 ---GQTNKSSC---------TTTRDTVCQ-CEKGSFQDKNSPEMCRTCRTGCP---RGMV 167
G TN ++C + CQ C +G++Q + +C C G G +
Sbjct: 679 GPLGATNVTTCAGQCPPGQHSVDGFKPCQPCPRGTYQPEAGRTLCFPCGGGLTTKHEGAI 738
Query: 168 KVSNC 172
+C
Sbjct: 739 SFQDC 743
>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
precursor [Homo sapiens]
Length = 616
Score = 36.6 bits (83), Expect = 0.039
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 98 PCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSSCTTTRDTVC-QCEKGSFQDK-NSPEMC 155
PCT Y +L C C C+ G+ S CTTT D+VC C + D N + C
Sbjct: 33 PCTSEKHY----EHLGRC--CNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKC 86
Query: 156 ---RTCRTGCPRGMVKVSNCTPRSDIKC 180
+ C TG V N T C
Sbjct: 87 LLHKVCDTGKALVAVVAGNSTTPRRCAC 114
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 36.2 bits (82), Expect = 0.051
Identities = 59/219 (26%), Positives = 86/219 (39%), Gaps = 32/219 (14%)
Query: 5 GQSVPTASSARA---------GRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDS 55
G +P A +AR+ G PG G+ LDPK + + A + S
Sbjct: 43 GGQLPAAGAARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPK--EPLGNQRAASPTPKQAS 100
Query: 56 ATIPRQDEVPQQTVA--PQQQ-----RRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIA 108
AT P E P++T A P Q RR+L+ + S RS T Y++
Sbjct: 101 ATTPGH-ESPRETRAQGPAGQEADGPRRTLQVDSRTQRSGRSPSVSPDRGSTPTSPYSVP 159
Query: 109 S-NNLPSCLLCTVCKS-------GQTNKSSCTTTRDTVC-QC--EKGSFQDKNSPEMCRT 157
LPS LC +CK+ Q N ++CT + VC QC + +C
Sbjct: 160 QIAPLPSSTLCPICKTSDLTSTPSQPNFNTCTQCHNKVCNQCGFNPNPHLTQVKEWLCLN 219
Query: 158 CRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAE 196
C+ GM + PRS + + S A S +PA +
Sbjct: 220 CQMQRALGMDMTT--APRSKSQQQLHSPALSPAHSPAKQ 256
>gi|89363020 nuclear transcription factor, X-box binding-like 1
[Homo sapiens]
Length = 911
Score = 35.8 bits (81), Expect = 0.067
Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 24/121 (19%)
Query: 79 KEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLC--------TVCKSGQTNKSS 130
+ +CP+ HR G+C PC E VD N + C CK + +
Sbjct: 504 RNHKCPSVCHR----GSCYPCPETVDVKCNCGNTKVTVPCGRERTTRPPKCKEQCSRPPT 559
Query: 131 CTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTG 190
C T +C GS C C C + + K + P C +++ TG
Sbjct: 560 CHHTSQEKHRCHFGS---------CPPCHQPCQKVLEKCGHLCP---APCHDQALIKQTG 607
Query: 191 K 191
+
Sbjct: 608 R 608
>gi|5730095 tumor necrosis factor receptor superfamily, member 9
precursor [Homo sapiens]
Length = 255
Score = 35.4 bits (80), Expect = 0.088
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 73 QQRRSLKE--EECPAGSH-RSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKS 129
++ RSL++ CPAG+ + C+PC + +C +C CK +
Sbjct: 19 ERTRSLQDPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQR--TCDICRQCKGVFRTRK 76
Query: 130 SCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRG 165
C++T + C C G F + C C C +G
Sbjct: 77 ECSSTSNAECDCTPG-FHCLGAG--CSMCEQDCKQG 109
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 33.9 bits (76), Expect = 0.25
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 90 SEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSSC----TTTRDTVCQCEKGS 145
SE + C+ + G T S C+S +T+ +SC + T T C C+
Sbjct: 80 SETSSTCSCQSSGTSSTSCSWQFSRTSSTCCCQSSRTSSTSCSCQSSRTSSTSCSCQSSR 139
Query: 146 FQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASST 189
S + RT T C S + R+ C +S+ +S+
Sbjct: 140 TSSTCSCQTSRTSSTSC-------SYQSSRTSSTCSCQSSGTSS 176
>gi|20336246 proprotein convertase subtilisin/kexin type 5
preproprotein [Homo sapiens]
Length = 913
Score = 33.9 bits (76), Expect = 0.25
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 83 CPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSS-CTTTRDTVCQC 141
CP GS++ C C+E +N CT C+ G + + S C+ + C
Sbjct: 724 CPDGSYQDTKKNLCRKCSENCKTCTEFHN------CTECRDGLSLQGSRCSVS------C 771
Query: 142 EKGSFQDKNSPEMC-RTCRTGCPRGMVKVSNCT 173
E G + + + C R C T G NCT
Sbjct: 772 EDGRYFNGQDCQPCHRFCATCAGAGADGCINCT 804
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 33.1 bits (74), Expect = 0.43
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 90 SEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSSCTT----TRDTVCQCEKGS 145
SE + C+ + G T S C+S +T+ +SC+ T T C C+
Sbjct: 80 SETSSTCSCQSSGTSSTSCSWQFSRTSSTCRCQSSRTSSTSCSCQSSRTSSTSCSCQSSR 139
Query: 146 FQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASST 189
S + RT T C S + R+ C +S+ +S+
Sbjct: 140 TSSTCSCQTSRTSSTSC-------SYQSSRTSSTCSCQSSGTSS 176
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,678,677
Number of Sequences: 37866
Number of extensions: 734137
Number of successful extensions: 2941
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 2844
Number of HSP's gapped (non-prelim): 140
length of query: 386
length of database: 18,247,518
effective HSP length: 104
effective length of query: 282
effective length of database: 14,309,454
effective search space: 4035266028
effective search space used: 4035266028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.