Guide to the Human Genome
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Name: LOC100289618 Sequence: fasta or formatted (853aa) NCBI GI: 239743863
Description:

PREDICTED: hypothetical protein XP_002342982

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         35           2
 C cysteine           13.0        111           2
 D aspartate           6.4         55           5
 E glutamate           8.1         69           2
 F phenylalanine       2.3         20           3
 G glycine             8.0         68           2
 H histidine           4.2         36           2
 I isoleucine          1.9         16           1
 K lysine              5.9         50           2
 L leucine             6.3         54           3
 M methionine          2.1         18           2
 N asparagine          2.9         25           2
 P proline             4.7         40           2
 Q glutamine           3.9         33           1
 R arginine            4.5         38           1
 S serine              8.0         68           3
 T threonine           5.0         43           2
 V valine              3.8         32           3
 W tryptophan          1.1          9           1
 Y tyrosine            3.9         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342982 
LOC100290671          0.999   PREDICTED: hypothetical protein XP_002347099 
LOC100292811          0.993   PREDICTED: similar to proprotein convertase subtili...
FRAS1                 0.151   Fraser syndrome 1 
PCSK5                 0.069   proprotein convertase subtilisin/kexin type 5 prepro...
PCSK6                 0.061   paired basic amino acid cleaving system 4 isoform a p...
PCSK6                 0.061   paired basic amino acid cleaving system 4 isoform b ...
PCSK6                 0.059   paired basic amino acid cleaving system 4 isoform h ...
PCSK6                 0.059   paired basic amino acid cleaving system 4 isoform g ...
PEAR1                 0.055   platelet endothelial aggregation receptor 1 
MEGF6                 0.048   EGF-like-domain, multiple 3 
MEGF10                0.045   multiple EGF-like-domains 10 
MEGF11                0.043   multiple EGF-like-domains 11 
SCARF1                0.034   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.034   scavenger receptor class F, member 1 isoform 1 precu...
LAMA1                 0.027   laminin, alpha 1 precursor 
CRELD2                0.027   cysteine-rich with EGF-like domains 2 isoform b [Ho...
LAMB4                 0.026   laminin, beta 4 
SCARF2                0.026   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.026   scavenger receptor class F, member 2 isoform 2 [Homo...
SCARF1                0.023   scavenger receptor class F, member 1 isoform 5 prec...
LAMB1                 0.023   laminin, beta 1 precursor 
RSPO1                 0.022   R-spondin1 
LAMA2                 0.022   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.022   laminin alpha 2 subunit isoform a precursor 
EGFR                  0.021   epidermal growth factor receptor isoform a precursor...
ERBB4                 0.021   v-erb-a erythroblastic leukemia viral oncogene homo...
ERBB4                 0.021   v-erb-a erythroblastic leukemia viral oncogene homolo...
FBLN2                 0.020   fibulin 2 isoform a precursor 
LAMC3                 0.020   laminin, gamma 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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