Guide to the Human Genome
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Name: C10orf47 Sequence: fasta or formatted (435aa) NCBI GI: 223633935
Description:

hypothetical protein LOC254427

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         50           2
 C cysteine            1.4          6           2
 D aspartate           4.4         19           2
 E glutamate           8.0         35           2
 F phenylalanine       3.0         13           2
 G glycine             9.4         41           3
 H histidine           1.8          8           1
 I isoleucine          1.6          7           2
 K lysine              2.3         10           1
 L leucine             7.8         34           2
 M methionine          0.9          4           1
 N asparagine          1.4          6           1
 P proline            14.3         62           4
 Q glutamine           3.0         13           1
 R arginine            9.9         43           2
 S serine             11.0         48           4
 T threonine           4.1         18           1
 V valine              3.4         15           1
 W tryptophan          0.5          2           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC254427 
COL2A1                0.056   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL1A1                0.050   alpha 1 type I collagen preproprotein 
COL2A1                0.049   collagen, type II, alpha 1 isoform 2 precursor [Hom...
TAF4                  0.049   TBP-associated factor 4 
COL7A1                0.044   alpha 1 type VII collagen precursor 
MINK1                 0.041   misshapen/NIK-related kinase isoform 1 
MLL4                  0.041   myeloid/lymphoid or mixed-lineage leukemia 4 
MINK1                 0.040   misshapen/NIK-related kinase isoform 2 
GLTSCR1               0.040   glioma tumor suppressor candidate region gene 1 [Ho...
SMTN                  0.038   smoothelin isoform a 
SMTN                  0.038   smoothelin isoform b 
SMTN                  0.038   smoothelin isoform c 
SYNJ1                 0.037   synaptojanin 1 isoform b 
SRRM1                 0.037   serine/arginine repetitive matrix 1 
KIAA0754              0.037   hypothetical protein LOC643314 
C1orf116              0.036   specifically androgen-regulated protein isoform 1 [...
COL22A1               0.036   collagen, type XXII, alpha 1 
NACA                  0.036   nascent polypeptide-associated complex alpha subuni...
SYNJ1                 0.035   synaptojanin 1 isoform c 
SYNJ1                 0.035   synaptojanin 1 isoform a 
COL5A2                0.035   alpha 2 type V collagen preproprotein 
SFPQ                  0.035   splicing factor proline/glutamine rich (polypyrimidin...
CASKIN1               0.035   CASK interacting protein 1 
KDM6B                 0.035   lysine (K)-specific demethylase 6B 
LOC731551             0.035   PREDICTED: similar to ectonucleotide pyrophosphatas...
C6orf132              0.035   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.035   PREDICTED: chromosome 6 open reading frame 132 [Hom...
LOC650354             0.035   PREDICTED: similar to ectonucleotide pyrophosphatas...
C6orf132              0.035   PREDICTED: hypothetical protein LOC647024 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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