Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC650354 Sequence: fasta or formatted (542aa) NCBI GI: 169167316
Description:

PREDICTED: similar to ectonucleotide pyrophosphatase/phosphodiesterase 5

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         48           2
 C cysteine            2.2         12           1
 D aspartate           3.9         21           1
 E glutamate           5.4         29           2
 F phenylalanine       3.1         17           1
 G glycine             9.6         52           3
 H histidine           2.8         15           1
 I isoleucine          3.9         21           2
 K lysine              2.8         15           2
 L leucine             9.4         51           2
 M methionine          1.3          7           1
 N asparagine          4.2         23           1
 P proline            12.0         65           3
 Q glutamine           3.3         18           2
 R arginine            7.6         41           2
 S serine              7.0         38           2
 T threonine           5.2         28           2
 V valine              4.1         22           1
 W tryptophan          1.3          7           1
 Y tyrosine            2.2         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ectonucleotide pyrophosphatas... 
LOC731551             1.000   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC729213             0.264   PREDICTED: similar to ectonucleotide pyrophosphatas...
ENPP7                 0.136   ectonucleotide pyrophosphatase/phosphodiesterase 7 [...
LOC729213             0.130   PREDICTED: similar to hCG2042391 
LOC650177             0.116   PREDICTED: similar to hCG2042391 
LOC650177             0.116   PREDICTED: similar to hCG2042391 
LOC650177             0.116   PREDICTED: similar to hCG2042391 
LOC100287665          0.111   PREDICTED: hypothetical protein XP_002342862 
LOC646344             0.109   PREDICTED: similar to hCG2042391 
LOC100292173          0.100   PREDICTED: hypothetical protein 
ENPP5                 0.054   ectonucleotide pyrophosphatase/phosphodiesterase 5 (...
ENPP4                 0.053   ectonucleotide pyrophosphatase/phosphodiesterase 4 (p...
FAM86B2               0.034   hypothetical protein LOC653333 
FAM86B1               0.034   hypothetical protein LOC85002 
FAM86A                0.033   hypothetical protein LOC196483 isoform 2 
FAM86A                0.033   hypothetical protein LOC196483 isoform 1 
FAM86C                0.028   hypothetical protein LOC55199 isoform 1 
FAM86C                0.028   hypothetical protein LOC55199 isoform 3 
FAM86C                0.028   hypothetical protein LOC55199 isoform 2 
FAM86B2               0.027   PREDICTED: hypothetical protein LOC653333 
C10orf47              0.027   hypothetical protein LOC254427 
OTUD1                 0.023   OTU domain containing 1 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.023   PREDICTED: hypothetical protein LOC80164 
SRCAP                 0.022   Snf2-related CBP activator protein 
PTPN23                0.020   protein tyrosine phosphatase, non-receptor type 23 [...
ENPP6                 0.020   ectonucleotide pyrophosphatase/phosphodiesterase 6 [...
TAF4                  0.019   TBP-associated factor 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press