Guide to the Human Genome
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Name: EPHB4 Sequence: fasta or formatted (987aa) NCBI GI: 32528301
Description:

EPH receptor B4 precursor

Referenced in:

Ephrins and Ephrin Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         89           3
 C cysteine            2.7         27           1
 D aspartate           4.0         39           1
 E glutamate           7.2         71           2
 F phenylalanine       3.5         35           1
 G glycine             8.3         82           2
 H histidine           1.9         19           2
 I isoleucine          3.0         30           2
 K lysine              3.7         37           2
 L leucine             8.9         88           2
 M methionine          1.8         18           1
 N asparagine          2.6         26           1
 P proline             6.6         65           4
 Q glutamine           3.6         36           1
 R arginine            6.9         68           2
 S serine              7.6         75           2
 T threonine           5.5         54           2
 V valine              8.2         81           3
 W tryptophan          1.7         17           1
 Y tyrosine            3.0         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EPH receptor B4 precursor 
EPHB3                 0.563   ephrin receptor EphB3 precursor 
EPHB2                 0.537   ephrin receptor EphB2 isoform 1 precursor 
EPHB2                 0.537   ephrin receptor EphB2 isoform 2 precursor 
EPHB1                 0.533   ephrin receptor EphB1 precursor 
EPHA4                 0.471   ephrin receptor EphA4 
EPHA7                 0.462   ephrin receptor EphA7 
EPHA5                 0.453   ephrin receptor EphA5 isoform b precursor 
EPHA3                 0.453   ephrin receptor EphA3 isoform a precursor 
EPHA5                 0.449   ephrin receptor EphA5 isoform a precursor 
EPHA6                 0.439   EPH receptor A6 isoform a 
EPHA8                 0.415   ephrin receptor EphA8 isoform 1 precursor 
EPHA2                 0.397   ephrin receptor EphA2 
EPHB6                 0.382   ephrin receptor EphB6 precursor 
EPHA10                0.355   EPH receptor A10 isofom 3 
EPHA1                 0.343   ephrin receptor EphA1 
EPHA3                 0.181   ephrin receptor EphA3 isoform b precursor 
EPHA8                 0.146   ephrin receptor EphA8 isoform 2 precursor 
PTK2                  0.101   PTK2 protein tyrosine kinase 2 isoform b 
PTK2                  0.101   PTK2 protein tyrosine kinase 2 isoform a 
HCK                   0.100   hemopoietic cell kinase isoform p61HCK 
YES1                  0.099   viral oncogene yes-1 homolog 1 
SRC                   0.099   proto-oncogene tyrosine-protein kinase SRC 
SRC                   0.099   proto-oncogene tyrosine-protein kinase SRC 
FYN                   0.097   protein-tyrosine kinase fyn isoform a 
LCK                   0.096   lymphocyte-specific protein tyrosine kinase precurs...
LCK                   0.096   lymphocyte-specific protein tyrosine kinase precurs...
LYN                   0.096   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog ...
LYN                   0.096   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog is...
FYN                   0.095   protein-tyrosine kinase fyn isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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