PABPN1 30776

Name: PABPN1	Sequence: fasta or formatted (306aa)		NCBI GI: 4758876
Description: poly(A) binding protein, nuclear 1		Referenced in: Polyadenylation
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.4 35 10 C cysteine 0.7 2 1 D aspartate 3.3 10 1 E glutamate 13.4 41 5 F phenylalanine 2.6 8 1 G glycine 13.1 40 2 H histidine 1.3 4 1 I isoleucine 3.3 10 1 K lysine 3.3 10 1 L leucine 4.9 15 3 M methionine 2.0 6 1 N asparagine 3.3 10 1 P proline 9.8 30 3 Q glutamine 1.3 4 1 R arginine 9.2 28 3 S serine 6.9 21 2 T threonine 2.9 9 2 V valine 3.9 12 1 W tryptophan 0.3 1 1 Y tyrosine 3.3 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 poly(A) binding protein, nuclear 1 LOC390748 0.257 similar to poly(A)binding protein nuclear-like 1 [H... RBM34 0.070 RNA binding motif protein 34 isoform 1 HNRNPD 0.060 heterogeneous nuclear ribonucleoprotein D isoform a ... HNRNPD 0.058 heterogeneous nuclear ribonucleoprotein D isoform c ... NCL 0.057 nucleolin FUSIP1 0.055 FUS interacting protein (serine-arginine rich) 1 isof... SFRS2 0.055 splicing factor, arginine/serine-rich 2 FUSIP1 0.053 FUS interacting protein (serine-arginine rich) 1 iso... KDM1 0.053 amine oxidase (flavin containing) domain 2 isoform a... KDM1 0.053 amine oxidase (flavin containing) domain 2 isoform b... CSTF2T 0.053 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... CSTF2 0.047 cleavage stimulation factor subunit 2 SNRNP70 0.047 U1 small nuclear ribonucleoprotein 70 kDa COL11A1 0.045 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.045 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.045 alpha 1 type XI collagen isoform A preproprotein [Ho... COL9A2 0.045 alpha 2 type IX collagen SFRS2B 0.045 splicing factor, arginine/serine-rich 2B LOC653884 0.045 PREDICTED: similar to FUS interacting protein (seri... RBM3 0.043 RNA binding motif protein 3 COL5A1 0.042 alpha 1 type V collagen preproprotein SFRS7 0.042 splicing factor, arginine/serine-rich 7 COL13A1 0.042 alpha 1 type XIII collagen isoform 20 COL13A1 0.042 alpha 1 type XIII collagen isoform 19 COL13A1 0.042 alpha 1 type XIII collagen isoform 18 COL13A1 0.042 alpha 1 type XIII collagen isoform 17 COL13A1 0.042 alpha 1 type XIII collagen isoform 16 COL13A1 0.042 alpha 1 type XIII collagen isoform 15 COL13A1 0.042 alpha 1 type XIII collagen isoform 14 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.