Guide to the Human Genome
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Name: BRD4 Sequence: fasta or formatted (1362aa) NCBI GI: 19718731
Description:

bromodomain-containing protein 4 isoform long

Referenced in:

Bromodomain Family

Other entries for this name:
alt prot [722aa] bromodomain-containing protein 4 isoform short
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         95           4
 C cysteine            0.6          8           2
 D aspartate           3.5         48           2
 E glutamate           7.5        102           3
 F phenylalanine       1.8         25           1
 G glycine             2.2         30           1
 H histidine           3.3         45           6
 I isoleucine          2.8         38           2
 K lysine              8.3        113           3
 L leucine             6.0         82           2
 M methionine          2.6         35           1
 N asparagine          2.6         35           2
 P proline            17.3        236           8
 Q glutamine          10.8        147           8
 R arginine            4.6         62           4
 S serine              7.9        108           4
 T threonine           4.5         61           3
 V valine              5.1         69           3
 W tryptophan          0.4          5           1
 Y tyrosine            1.3         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bromodomain-containing protein 4 isoform long 
BRD4                  0.517   bromodomain-containing protein 4 isoform short 
BRD3                  0.262   bromodomain containing protein 3 
BRD2                  0.254   bromodomain containing 2 
BRD2                  0.254   bromodomain containing 2 
BRDT                  0.205   testis-specific bromodomain protein 
BRDT                  0.205   testis-specific bromodomain protein 
RBM33                 0.049   RNA binding motif protein 33 
RAPH1                 0.045   Ras association and pleckstrin homology domains 1 is...
TTN                   0.045   titin isoform N2-A 
RERE                  0.038   atrophin-1 like protein isoform b 
RERE                  0.038   atrophin-1 like protein isoform a 
RERE                  0.038   atrophin-1 like protein isoform a 
MLL2                  0.038   myeloid/lymphoid or mixed-lineage leukemia 2 
PRB2                  0.036   proline-rich protein BstNI subfamily 2 
FMN2                  0.036   formin 2 
SRRM1                 0.035   serine/arginine repetitive matrix 1 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
CCNK                  0.035   cyclin K isoform 1 
PCLO                  0.034   piccolo isoform 2 
PCLO                  0.034   piccolo isoform 1 
PRG4                  0.034   proteoglycan 4 isoform B 
PRG4                  0.034   proteoglycan 4 isoform A 
PRB1                  0.033   proline-rich protein BstNI subfamily 1 isoform 1 pre...
WNK2                  0.032   WNK lysine deficient protein kinase 2 
ATN1                  0.031   atrophin-1 
ATN1                  0.031   atrophin-1 
WIPF3                 0.031   WAS/WASL interacting protein family, member 3 [Homo...
PRB3                  0.031   proline-rich protein BstNI subfamily 3 precursor [H...
YLPM1                 0.030   YLP motif containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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